Expressions 1983

The 1983 edition of Expressions magazine is the result of the efforts of students from several DMACC programs. Entrants in both the annual Creative Writing Contest and the Campus Chronicle Photography Contest as well as student in the commercial art program contributed material to the magazine. Layout, design and typesetting was done by the summer Publications Production class.https://openspace.dmacc.edu/expressions/1005/thumbnail.jp

Unpacking a crop diversity hotspot: farmer practice and preferences in Northern Malawi

Crop diversity is a key principle of sustainable food production systems. Yet, inter and intra specific diversification is declining in many regions of the world. In Northern Malawi, a participatory action research project (Soils Food and Healthy Communities) has conducted agroecological co-learning with farmers for over a decade, providing an opportunity to explore farmer management, crop choice and variety selection practices. Farmers who participate receive seed for 0.10 ha of on-farm testing for one growing season and then decide whether to continue to grow the crop. Cropping system diversity, management practices and traits associated with crops grown and lost were assessed through interviews with 198 farm households (757 fields). We found an average of 1.3 species per field and 4.0 crops per farm. This is almost twice the level of diversity in other reports from Malawi smallholder farms. Farmers cited a wide range of preferred groundnut variety traits, as well as concerns (namely, high labour requirements). Both modern and local maize varieties are being grown and those retained were often associated with early maturity or preferred grain quality traits such as storability. Overall, farmers at this Northern Malawi agroecology education site are growing diverse crop mixtures that include traditional as well as modern varieties of maize and groundnut

Effect of Membrane Microheterogeneity and Domain Size on Fluorescence Resonance Energy Transfer

Studies of multicomponent membranes suggest lateral inhomogeneity in the form of membrane domains, but the size of small (nanoscale) domains in situ cannot be determined with current techniques. In this article, we present a model that enables extraction of membrane domain size from time-resolved fluorescence resonance energy transfer (FRET) data. We expand upon a classic approach to the infinite phase separation limit and formulate a model that accounts for the presence of disklike domains of finite dimensions within a two-dimensional infinite planar bilayer. The model was tested against off-lattice Monte Carlo calculations of a model membrane in the liquid-disordered (ld) and liquid-ordered (lo) coexistence regime. Simulated domain size was varied from 5 to 50 nm, and two fluorophores, preferentially partitioning into opposite phases, were randomly mixed to obtain the simulated time-resolved FRET data. The Monte Carlo data show clear differences in the efficiency of energy transfer as a function of domain size. The model fit of the data yielded good agreement for the domain size, especially in cases where the domain diameter is <20 nm. Thus, data analysis using the proposed model enables measurement of nanoscale membrane domains using time-resolved FRET

Membrane bending is critical for the stability of voltage sensor segments in the membrane

The interaction between membrane proteins and the surrounding membrane is becoming increasingly appreciated for its role in regulating protein function, protein localization, and membrane morphology. In particular, recent studies have suggested that membrane deformation is needed to stably accommodate proteins harboring charged amino acids in their transmembrane (TM) region, as it is energetically prohibitive to bury charge in the hydrophobic core of the bilayer. Unfortunately, current computational methods are poorly equipped for describing such deformations, as atomistic simulations are often too short to observe large-scale membrane reorganization and most continuum approaches assume a flat membrane. Previously, we developed a method that overcomes these shortcomings by using elasticity theory to characterize equilibrium membrane distortions in the presence of a TM protein, while using traditional continuum electrostatic and nonpolar energy models to determine the energy of the protein in the membrane. Here, we linked the elastostatics, electrostatics, and nonpolar numeric solvers to permit the calculation of energies for nontrivial membrane deformations. We then coupled this procedure to a robust search algorithm that identifies optimal membrane shapes for a TM protein of arbitrary chemical composition. This advance now permits us to explore a host of biological phenomena that were beyond the scope of our original method. We show that the energy required to embed charged residues in the membrane can be highly nonadditive, and our model provides a simple mechanical explanation for this nonadditivity. Our results also predict that isolated voltage sensor segments do not insert into rigid membranes, but membrane bending dramatically stabilizes these proteins in the bilayer despite their high charge content. Additionally, we use the model to explore hydrophobic mismatch with regard to nonpolar peptides and mechanosensitive channels. Our method is in quantitative agreement with molecular dynamics simulations at a tiny fraction of the computational cost