Process and machine system development for the forming of miniature/micro sheet metal products

This paper reports on the current development of the process for the forming of thin sheet-metal micro-parts (t < 50µm) and the corresponding machine system which is part of the research and technological development of an EU funded integrated project - MASMICRO ("Integration of Manufacturing Systems for the Mass-Manufacture of Miniature/Micro-Products" (/www.masmicro.net/). The process development started with qualification of the fundamentals related to the forming of thin sheet-metals in industrial environment, for which a testing machine and several sets of the testing tools were developed. The process was further optimised, followed by new tool designs. Based on the experience gained during the process development, a new forming press which is suitable for industrial, mass-customised production, has been designed

Validation of age determination using otoliths of the European anchovy (Engraulis encrasicolus L.) in the Bay of Biscay

Validation of the age determination procedure using otoliths of European anchovy in the Bay of Biscay was achieved by monitoring very strong year-classes in successive spring catches and surveys, as well as the seasonal occurrence of edge types. Historical corroboration of the ageing method was obtained by cross-correlation between successive age groups by year-classes in catches and surveys (1987–2013). Summary annual growth in length is also presented. Yearly annuli consist of a hyaline zone (either single or composite) and a wide opaque zone, disrupted occasionally by some typical checks (mainly at age-0 and age-1 at peak spawning time). Age determination, given a date of capture, requires knowledge of the typical annual growth pattern of otoliths, their seasonal edge formation by ages and the most typical checks. Most opaque growth occurs in summer and is minimal (translucent) in winter. Opaque zone formation begins earlier in younger fish (in spring), and this helps distinguish age-1 from age-2þ.Versión del edito

“Plug and play” modular façade construction system for building renovation to achieve nearly Zero Energy Building (nZEB)

Following energy performance improvement policies, there is a need for the massive renovation of the European building stock. The prevalence of multi-rise buildings with concrete structure and poor thermal performance offers a significant opportunity for renovation packages that facilitate the improvement of the building fabric, with its insulation, air-tightness and integration of building services and solar technologies. The RenoZEB project develops a "plug and play" modular facade construction system answering to this need. This prefabricated plug and play modular system has been tested by reproducing the holistic methodology and new technologies in the market by means of real and virtual demonstrators. The applicability and effectiveness of the methodology has been tested by means of a full-scale mock-up system has been constructed and installed in the KUBIK by Tecnalia test facility. The design, construction, manufacture & installation cycle has been tested. Its applicability for a real construction project for a multi-rise residential building in Spain is presented.This project has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 768718

Validation of age determination from Otoliths for Bay of Biscay anchovy

Comprehension of the annual pattern of annulus formation throughout the anchovy life span was first achieved from the observations of the strong 1982 year class which showed a neat annual progression of modal lengths passing through the fishery until the exceptional age of 5. Validation of the proposed method was subsequently obtained through monitoring of the progression of the strong 1987, 1989 and 1991 year-classes, both by spring annual surveys and by continuous sampling of the commercial catches, coupled to the monitoring of the seasonal marginal edge formation of the otoliths. Since then Age validation has been confirmed by the correlation between the pulses of recruitments (at age 1), as reflected in their relative occurrence in the population in Spring, and the abundance of those recruitments according to surveys. Typically, annual growth of anchovy otoliths of the one and two years old diminish to about 2/3-1/2 and 1/3 of that occurring in their previous ages respectively. Growth of older ages (three and four) are rather similar as, or slightly lesser than, at age 2. Maximum growth (white band formation) occurs in summer and growth detentions (with translucent annulus formation) in winter time. However the opaque edge formation begins sooner at the age of 1 (around February-March) than at older ages (May or June). During the first winter several translucent rings are occasionally formed resulting in a composite annulus formation. In addition during June/July, at peak spawning, a check is formed in many of the one year old anchovies. However, not all year classes, neither all anchovies lay down the same amount of checks and many of them may not show any. As such age determination requires the knowledge of the typical annual growth pattern of otoliths, of their seasonal edge formation by ages and of the most typical checks

Land cover change interacts with drought severity to change fire regimes in Western Amazonia

Fire is becoming a pervasive driver of environmental change in Amazonia and is expected to intensify, given projected reductions in precipitation and forest cover. Understanding of the influence of post-deforestation land cover change on fires in Amazonia is limited, even though fires in cleared lands constitute a threat for ecosystems, agriculture, and human health. We used MODIS satellite data to map burned areas annually between 2001 and 2010. We then combined these maps with land cover and climate information to understand the influence of land cover change in cleared lands and dry-season severity on fire occurrence and spread in a focus area in the Peruvian Amazon. Fire occurrence, quantified as the probability of burning of individual 232-m spatial resolution MODIS pixels, was modeled as a function of the area of land cover types within each pixel, drought severity, and distance to roads. Fire spread, quantified as the number of pixels burned in 3 × 3 pixel windows around each focal burned pixel, was modeled as a function of land cover configuration and area, dry-season severity, and distance to roads. We found that vegetation regrowth and oil palm expansion are significantly correlated with fire occurrence, but that the magnitude and sign of the correlation depend on drought severity, successional stage of regrowing vegetation, and oil palm age. Burning probability increased with the area of nondegraded pastures, fallow, and young oil palm and decreased with larger extents of degraded pastures, secondary forests, and adult oil palm plantations. Drought severity had the strongest influence on fire occurrence, overriding the effectiveness of secondary forests, but not of adult plantations, to reduce fire occurrence in severely dry years. Overall, irregular and scattered land cover patches reduced fire spread but irregular and dispersed fallows and secondary forests increased fire spread during dry years. Results underscore the importance of land cover management for reducing fire proliferation in this landscape. Incentives for promoting natural regeneration and perennial crops in cleared lands might help to reduce fire risk if those areas are protected against burning in early stages of development and during severely dry years

Dietary Fat Patterns and Outcomes in Acute Pancreatitis in Spain

Background/Objective: Evidence from basic and clinical studies suggests that unsaturated fatty acids (UFAs) might be relevant mediators of the development of complications in acute pancreatitis (AP). Objective: The aim of this study was to analyze outcomes in patients with AP from regions in Spain with different patterns of dietary fat intake. Materials and Methods: A retrospective analysis was performed with data from 1,655 patients with AP from a Spanish prospective cohort study and regional nutritional data from a Spanish cross-sectional study. Nutritional data considered in the study concern the total lipid consumption, detailing total saturated fatty acids, UFAs and monounsaturated fatty acids (MUFAs) consumption derived from regional data and not from the patient prospective cohort. Two multivariable analysis models were used: (1) a model with the Charlson comorbidity index, sex, alcoholic etiology, and recurrent AP; (2) a model that included these variables plus obesity. Results: In multivariable analysis, patients from regions with high UFA intake had a significantly increased frequency of local complications, persistent organ failure (POF), mortality, and moderate-to-severe disease in the model without obesity and a higher frequency of POF in the model with obesity. Patients from regions with high MUFA intake had significantly more local complications and moderate-to-severe disease; this significance remained for moderate-to-severe disease when obesity was added to the model. Conclusions: Differences in dietary fat patterns could be associated with different outcomes in AP, and dietary fat patterns may be a pre-morbid factor that determines the severity of AP. UFAs, and particulary MUFAs, may influence the pathogenesis of the severity of AP

Contrasting gene expression patterns in grain of high and low asparagine wheat genotypes in response to sulphur supply

Background: Free asparagine is the precursor for acrylamide formation during cooking and processing of grains, tubers, beans and other crop products. In wheat grain, free asparagine, free glutamine and total free amino acids accumulate to high levels in response to sulphur deficiency. In this study, RNA-seq data were acquired for the embryo and endosperm of two genotypes of bread wheat, Spark and SR3, growing under conditions of sulphur sufficiency and deficiency, and sampled at 14 and 21 days post anthesis (dpa). The aim was to provide new knowledge and understanding of the genetic control of asparagine accumulation and breakdown in wheat grain. Results: There were clear differences in gene expression patterns between the genotypes. Sulphur responses were greater at 21 dpa than 14 dpa, and more evident in SR3 than Spark. TaASN2 was the most highly expressed asparagine synthetase gene in the grain, with expression in the embryo much higher than in the endosperm, and higher in Spark than SR3 during early development. There was a trend for genes encoding enzymes of nitrogen assimilation to be more highly expressed in Spark than SR3 when sulphur was supplied. TaASN2 expression in the embryo of SR3 increased in response to sulphur deficiency at 21 dpa, although this was not observed in Spark. This increase in TaASN2 expression was accompanied by an increase in glutamine synthetase gene expression and a decrease in asparaginase gene expression. Asparagine synthetase and asparaginase gene expression in the endosperm responded in the opposite way. Genes encoding regulatory protein kinases, SnRK1 and GCN2, both implicated in regulating asparagine synthetase gene expression, also responded to sulphur deficiency. Genes encoding bZIP transcription factors, including Opaque2/bZIP9, SPA/bZIP25 and BLZ1/OHP1/bZIP63, all of which contain SnRK1 target sites, were also expressed. Homeologues of many genes showed differential expression patterns and responses, including TaASN2. Conclusions: Data on the genetic control of free asparagine accumulation in wheat grain and its response to sulphur supply showed grain asparagine levels to be determined in the embryo, and identified genes encoding signalling and metabolic proteins involved in asparagine metabolism that respond to sulphur availability

waviCGH: a web application for the analysis and visualization of genomic copy number alterations

waviCGH is a versatile web server for the analysis and comparison of genomic copy number alterations in multiple samples from any species. waviCGH processes data generated by high density SNP-arrays, array-CGH or copy-number calls generated by any technique. waviCGH includes methods for pre-processing of the data, segmentation, calling of gains and losses, and minimal common regions determination over a set of experiments. The server is a user-friendly interface to the analytical methods, with emphasis on results visualization in a genomic context. Analysis tools are introduced to the user as the different steps to follow in an experimental protocol. All the analysis steps generate high quality images and tables ready to be imported into spreadsheet programs. Additionally, for human, mouse and rat, altered regions are represented in a biological context by mapping them into chromosomes in an integrated cytogenetic browser. waviCGH is available at http://wavi.bioinfo.cnio.es

SignS: a parallelized, open-source, freely available, web-based tool for gene selection and molecular signatures for survival and censored data

<p>Abstract</p> <p>Background</p> <p>Censored data are increasingly common in many microarray studies that attempt to relate gene expression to patient survival. Several new methods have been proposed in the last two years. Most of these methods, however, are not available to biomedical researchers, leading to many re-implementations from scratch of ad-hoc, and suboptimal, approaches with survival data.</p> <p>Results</p> <p>We have developed SignS (Signatures for Survival data), an open-source, freely-available, web-based tool and R package for gene selection, building molecular signatures, and prediction with survival data. SignS implements four methods which, according to existing reviews, perform well and, by being of a very different nature, offer complementary approaches. We use parallel computing via MPI, leading to large decreases in user waiting time. Cross-validation is used to asses predictive performance and stability of solutions, the latter an issue of increasing concern given that there are often several solutions with similar predictive performance. Biological interpretation of results is enhanced because genes and signatures in models can be sent to other freely-available on-line tools for examination of PubMed references, GO terms, and KEGG and Reactome pathways of selected genes.</p> <p>Conclusion</p> <p>SignS is the first web-based tool for survival analysis of expression data, and one of the very few with biomedical researchers as target users. SignS is also one of the few bioinformatics web-based applications to extensively use parallelization, including fault tolerance and crash recovery. Because of its combination of methods implemented, usage of parallel computing, code availability, and links to additional data bases, SignS is a unique tool, and will be of immediate relevance to biomedical researchers, biostatisticians and bioinformaticians.</p