Functional Big-step Semantics

When doing an interactive proof about a piece of software, it is important that the underlying programming language’s semantics does not make the proof unnecessarily difficult or unwieldy. Both smallstep and big-step semantics are commonly used, and the latter is typically given by an inductively defined relation. In this paper, we consider an alternative: using a recursive function akin to an interpreter for the language. The advantages include a better induction theorem, less duplication, accessibility to ordinary functional programmers, and the ease of doing symbolic simulation in proofs via rewriting. We believe that this style of semantics is well suited for compiler verification, including proofs of divergence preservation. We do not claim the invention of this style of semantics: our contribution here is to clarify its value, and to explain how it supports several language features that might appear to require a relational or small-step approach. We illustrate the technique on a simple imperative language with C-like for-loops and a break statement, and compare it to a variety of other approaches. We also provide ML and lambda-calculus based examples to illustrate its generality

Presence and Persistence of Ebola or Marburg Virus in Patients and Survivors: A Rapid Systematic Review

Background: The 2013-15 Ebola outbreak was unprecedented due to sustainedtransmission within urban environments and thousands of survivors. In 2014 the World Health Organization stated that there was insufficient evidence to give definitive guidance about which body fluids are infectious and when they pose a risk to humans. We report a rapid systematic review of published evidence on the presence of filoviruses in body fluids of infected people and survivors. Methods: Scientific articles were screened for information about filovirus in human body fluids. The aim was to find primary data that suggested high likelihood of actively infectious filovirus in human body fluids (viral RNA). Eligible infections were from Marburg virus (MARV or RAVV) and Zaire, Sudan, Taï Forest and Bundibugyo species of Ebola. [1] Cause of infection had to be laboratory confirmed (in practice either tissue culture or RT-PCR tests), or evidenced by compatible clinical history with subsequent positivity for filovirus antibodies or inflammatory factors. Data were extracted and summarized narratively. Results: 6831 unique articles were found, and after screening, 33 studies were eligible. For most body fluid types there were insufficient patients to draw strong conclusions, and prevalence of positivity was highly variable. Body fluids taken >16 days after onset were usually negative. In the six studies that used both assay methods RT-PCR tests for filovirus RNA gave positive results about 4 times more often than tissue culture. Conclusions: Filovirus was reported in most types of body fluid, but not in every sample from every otherwise confirmed patient. Apart from semen, most non-blood, RT-PCR positive samples are likely to be culture negative and so possibly of low infectious risk. Nevertheless, it is not apparent how relatively infectious many body fluids are during or after illness, even when culture-positive, not least because most test results come from more severe cases. Contact with blood and blood-stained body fluids remains the major risk for disease transmission because of the known high viral loads in blood

The PdBI Arcsecond Whirlpool Survey (PAWS): The Role of Spiral Arms in Cloud and Star Formation

This is the final version of the article. Available from American Astronomical Society via the DOI in this record.The process that leads to the formation of the bright star-forming sites observed along prominent spiral arms remains elusive. We present results of a multi-wavelength study of a spiral arm segment in the nearby grand-design spiral galaxy M51 that belongs to a spiral density wave and exhibits nine gas spurs. The combined observations of the (ionized, atomic, molecular, dusty) interstellar medium with star formation tracers (H ii regions, young <10 Myr stellar clusters) suggest (1) no variation in giant molecular cloud (GMC) properties between arm and gas spurs, (2) gas spurs and extinction feathers arising from the same structure with a close spatial relation between gas spurs and ongoing/recent star formation (despite higher gas surface densities in the spiral arm), (3) no trend in star formation age either along the arm or along a spur, (4) evidence for strong star formation feedback in gas spurs, (5) tentative evidence for star formation triggered by stellar feedback for one spur, and (6) GMC associations being not special entities but the result of blending of gas arm/spur cross sections in lower resolution observations. We conclude that there is no evidence for a coherent star formation onset mechanism that can be solely associated with the presence of the spiral density wave. This suggests that other (more localized) mechanisms are important to delay star formation such that it occurs in spurs. The evidence of star formation proceeding over several million years within individual spurs implies that the mechanism that leads to star formation acts or is sustained over a longer timescale.S.E.M. and M.Q. acknowledge funding from the Deutsche Forschungsgemeinschaft (DFG) via grant SCHI 536/7-2 as part of the priority program SPP 1573 "ISM-SPP: Physics of the Interstellar Medium." C.L.D. acknowledges funding from the European Research Council for the FP7 ERC starting grant project LOCALSTAR. J.P. acknowledges support from the CNRS programme Physique et Chimie du Milieu Interstellaire (PCMI). M.Q. acknowledges the International Max Planck Research School for Astronomy and Cosmic Physics at the University of Heidelberg (IMPRS-HD). S.G.B. thanks support from Spanish grant AYA2012-32295. We acknowledge financial support to the DAGAL network from the People Programme (Marie Curie Actions) of the European Unions Seventh Framework Programme FP7/2007-2013/ under REA grant agreement number PITN-GA-2011-289313. E.S. thanks NRAO for their support and hospitality during her visits in Socorro. E.S. thanks the Kavli Institute for Theoretical Physics for hospitality during the writing of this paper. IRAM is supported by INSU/CNRS (France), MPG (Germany), and IGN (Spain)

The PdBI Arcsecond Whirlpool Survey (PAWS): Multi-phase cold gas kinematic of M51

This is the final version of the article. Available from the publisher via the DOI in this record.The kinematic complexity and the favorable position of M51 on the sky make this galaxy an ideal target to test different theories of spiral arm dynamics. Taking advantage of the new high-resolution PdBI Arcsecond Whirlpool Survey data, we undertake a detailed kinematic study of M51 to characterize and quantify the origin and nature of the non-circular motions. Using a tilted-ring analysis supported by several other archival data sets, we update the estimation of M51's position angle (P.A. = (173 ± 3)°) and inclination (i = (22 ± 5)°). Harmonic decomposition of the high-resolution (∼40 pc) CO velocity field shows the first kinematic evidence of an m = 3 wave in the inner disk of M51 with a corotation at R CR, m = 3 = 1.1 ± 0.1 kpc and a pattern speed of Ωp, m = 3 ≈ 140 km s -1 kpc-1. This mode seems to be excited by the nuclear bar, while the beat frequencies generated by the coupling between the m = 3 mode and the main spiral structure confirm its density-wave nature. We observe also a signature of an m = 1 mode that is likely responsible for the lopsidedness of M51 at small and large radii. We provide a simple method to estimate the radial variation of the amplitude of the spiral perturbation (V sp) attributed to the different modes. The main spiral arm structure has 〈V sp〉 = 50-70 km s-1, while the streaming velocity associated with the m = 1 and m = 3 modes is, in general, two times lower. Our joint analysis of H I and CO velocity fields at low and high spatial resolution reveals that the atomic and molecular gas phases respond differently to the spiral perturbation due to their different vertical distribution and emission morphology. © 2014. The American Astronomical Society. All rights reserved.We thank our anonymous referee for thoughtful comments that improved the quality of the paper. We thank the IRAM staff for their support during the observations with the Plateau de Bure interferometer and the 30 m telescope. D.C. and A.H. acknowledge funding from the Deutsche Forschungsgemeinschaft (DFG) via grant SCHI 536/5-1 and SCHI 536/7-1 as part of the priority program SPP 1573 “ISM-SPP: Physics of the Interstellar Medium.” C.L.D. acknowledges funding from the European Research Council for the FP7 ERC starting grant project LOCALSTAR. T.A.T. acknowledges support from NASA grant No. NNX10AD01G. During this work, J.P. was partially funded by the grant ANR-09-BLAN-0231-01 from the French Agence Nationale de la Recherche as part of the SCHISM project (http://schism.ens.fr/). E.S., A.H. and D.C. thank NRAO for their support and hospitality during their visits in Charlottesville. E.S. thanks the Aspen Center for Physics and the NSF grant No. 1066293 for hospitality during the development and writing of this paper. D.C. thanks Glenn van de Ven for the useful discussion and the help with the harmonic decomposition code. S.G.B. acknowledges economic support from Junta de Andalucia grant P08 TIC 03531. The National Radio Astronomy Observatory is a facility of the National Science Foundation operated under cooperative agreement by Associated Universities, Inc

The PdBI Arcsecond Whirlpool Survey (PAWS): Environmental dependence of giant molecular cloud properties in M51

This is the final version of the article. Available fromAmerican Astronomical Society / IOP Publishing via the DOI in this recordUsing data from the PdBI Arcsecond Whirlpool Survey (PAWS), we have generated the largest extragalactic giant molecular cloud (GMC) catalog to date, containing 1507 individual objects. GMCs in the inner M51 disk account for only 54% of the total 12CO(1-0) luminosity of the survey, but on average they exhibit physical properties similar to Galactic GMCs. We do not find a strong correlation between the GMC size and velocity dispersion, and a simple virial analysis suggests that ∼30% of GMCs in M51 are unbound. We have analyzed the GMC properties within seven dynamically motivated galactic environments, finding that GMCs in the spiral arms and in the central region are brighter and have higher velocity dispersions than inter-arm clouds. Globally, the GMC mass distribution does not follow a simple power-law shape. Instead, we find that the shape of the mass distribution varies with galactic environment: the distribution is steeper in inter-arm region than in the spiral arms, and exhibits a sharp truncation at high masses for the nuclear bar region. We propose that the observed environmental variations in the GMC properties and mass distributions are a consequence of the combined action of large-scale dynamical processes and feedback from high-mass star formation. We describe some challenges of using existing GMC identification techniques for decomposing the 12CO(1-0) emission in molecule-rich environments, such as M51's inner disk. © 2014. The American Astronomical Society. All rights reserved

Gravitational torques imply molecular gas inflow towards the nucleus of M 51

PublishedJournal Article© 2016 ESO.The transport of gas towards the centre of galaxies is critical for black hole feeding and, indirectly, it can control active galactic nucleus (AGN) feedback. We have quantified the molecular gas inflow in the central R< 1 kpc of M 51 to be 1 M⊙/yr, using a new gravitational torque map and the molecular gas traced by the Plateau de Bure Interferometer Arcsecond Whirlpool Survey (PAWS). The nuclear stellar bar is responsible for this gas inflow. We also used torque profiles to estimate the location of dynamical resonances, and the results suggest a corotation for the bar CRbar ∼ 20″, and a corotation for the spiral CRsp ∼ 100″. We demonstrate how important it is to correct 3.6 μm images for dust emission when gravitational torques are to be computed, and we examine further sources of uncertainty. Our observational measurement of gas inflow can be compared with nuclear molecular outflow rates and provide useful constraints for numerical simulations.The authors would like to thank the anonymous referee for a helpful report, as well as Daniela Calzetti, Nick Z. Scoville and Mari Polletta for making the HST/F190N mosaic available to us. We also appreciate valuable comments from Françoise Combes and Sebastian Haan. We acknowledge financial support to the DAGAL network from the People Programme (Marie Curie Actions) of the European Union’s Seventh Framework Programme FP7/2007- 2013/ under REA grant agreement number PITN-GA-2011-289313. M.Q. acknowledges the International Max Planck Research School for Astronomy and Cosmic Physics at the University of Heidelberg (IMPRS-HD). S.G.B. thanks support from Spanish grant AYA2012-32295. J.P. acknowledges support from the CNRS programme “Physique et Chimie du Milieu Interstellaire” (PCMI). M.Q., S.E.M., D.C. and A.H. acknowledge funding from the Deutsche Forschungsgemeinschaft (DFG) via grants SCHI 536/7-2,SCHI 536/5-1, and SCHI 536/7-1 as part of the priority program SPP 1573 “ISM-SPP: Physics of the Interstellar Medium”

Short GMC lifetimes: an observational estimate with the PdBI Arcsecond Whirlpool Survey (PAWS)

PublishedJournal ArticleWe describe and execute a novel approach to observationally estimate the lifetimes of giant molecular clouds (GMCs). We focus on the cloud population between the two main spiral arms in M51 (the inter-arm region) where cloud destruction via shear and star formation feedback dominates over formation processes. By monitoring the change in GMC number densities and properties across the inter-arm, we estimate the lifetime as a fraction of the inter-arm travel time. We find that GMC lifetimes in M51's inter-arm are finite and short, 20-30 Myr. Over most of the region under investigation shear appears to regulate the lifetime. As the shear timescale increases with galactocentric radius, we expect cloud destruction to switch primarily to feedback at larger radii. We identify a transition from shear- to feedback-dominated disruption, finding that shear is more efficient at dispersing clouds, whereas feedback transforms the population, e.g., by fragmenting high-mass clouds into lower mass pieces. Compared to the characteristic timescale for molecular hydrogen in M51, our short lifetimes suggest that gas can remain molecular while clouds disperse and reassemble. We propose that galaxy dynamics regulates the cycling of molecular material from diffuse to bound (and ultimately star-forming) objects, contributing to long observed molecular depletion times in normal disk galaxies. We also speculate that, in extreme environments like elliptical galaxies and concentrated galaxy centers, star formation can be suppressed when the shear timescale is short enough that some clouds will not survive to form stars.We thank the IRAM staff for their support during the observations with the Plateau de Bure interferometer and the 30 m telescope. S.E.M., D.C., and A.H. acknowledge funding from the Deutsche Forschungsgemeinschaft (DFG) via grants SCHI 536/7-2, SCHI 536/5-1, and SCHI 536/7-1 as part of the priority program SPP 1573 “ISM-SPP: Physics of the Interstellar Medium.” C.L.D. acknowledges funding from the European Research Council for the FP7 ERC starting grant project LOCALSTAR. T.A.T. acknowledges support from NASA grant number NNX10AD01G. J.P. acknowledges support from the CNRS program “Physique et Chimie du Milieu Interstellaire” (PCMI). M.Q. acknowledges financial support to the DAGAL network from the People Programme (Marie Curie Actions) of the European Union’s Seventh Framework Programme FP7/2007-2013/ under REA grant agreement number PITN-GA-2011-289313

STM Spectroscopy of ultra-flat graphene on hexagonal boron nitride

Graphene has demonstrated great promise for future electronics technology as well as fundamental physics applications because of its linear energy-momentum dispersion relations which cross at the Dirac point. However, accessing the physics of the low density region at the Dirac point has been difficult because of the presence of disorder which leaves the graphene with local microscopic electron and hole puddles, resulting in a finite density of carriers even at the charge neutrality point. Efforts have been made to reduce the disorder by suspending graphene, leading to fabrication challenges and delicate devices which make local spectroscopic measurements difficult. Recently, it has been shown that placing graphene on hexagonal boron nitride (hBN) yields improved device performance. In this letter, we use scanning tunneling microscopy to show that graphene conforms to hBN, as evidenced by the presence of Moire patterns in the topographic images. However, contrary to recent predictions, this conformation does not lead to a sizable band gap due to the misalignment of the lattices. Moreover, local spectroscopy measurements demonstrate that the electron-hole charge fluctuations are reduced by two orders of magnitude as compared to those on silicon oxide. This leads to charge fluctuations which are as small as in suspended graphene, opening up Dirac point physics to more diverse experiments than are possible on freestanding devices.Comment: Nature Materials advance online publication 13/02/201

Impact of the use of cryobank samples in a selected cattle breed: a simulation study

<p>Abstract</p> <p>Background</p> <p>High selection pressure on domestic cattle has led to an undesirable increase in inbreeding, as well as to the deterioration of some functional traits which are indirectly selected. Semen stored in a cryobank may be a useful way to redirect selection or limit the loss of genetic diversity in a selected breed. The purpose of this study was to analyse the efficiency of current cryobank sampling methods, by investigating the benefits of using cryopreserved semen in a selection scheme several generations after the semen was collected.</p> <p>Methods</p> <p>The theoretical impact of using cryopreserved semen in a selection scheme of a dairy cattle breed was investigated by simulating various scenarios involving two negatively correlated traits and a change in genetic variability of the breed.</p> <p>Results</p> <p>Our results indicate that using cryopreserved semen to redirect selection will have an impact on negatively selected traits only if it is combined with major changes in selection objectives or practices. If the purpose is to increase genetic diversity in the breed, it can be a viable option.</p> <p>Conclusions</p> <p>Using cryopreserved semen to redirect selection or to improve genetic diversity should be carried out with caution, by considering the pros and cons of prospective changes in genetic diversity and the value of the selected traits. However, the use of genomic information should lead to more interesting perspectives to choose which animals to store in a cryobank and to increase the value of cryobank collections for selected breeds.</p

Environmental determinants of macroinvertebrate diversity in small water bodies: insights from tank-bromeliads

The interlocking leaves of tank-forming bromeliads (Bromeliaceae) collect rainwater and detritus, thus creating a freshwater habitat for specialized organisms. Their abundance and the possibility of quantifying communities with accuracy give us unparalleled insight into how changes in local to regional environments influence community diversity in small water bodies. We sampled 365 bromeliads (365 invertebrate communities) along a southeastern to northwestern range in French Guiana. Geographic locality determined the species pool for bromeliad invertebrates, and local environments determined the abundance patterns through the selection of traits that are best adapted to the bromeliad habitats. Patterns in community structure mostly emerged from patterns of predator species occurrence and abundance across local-regional environments, while the set of detritivores remained constant. Water volume had a strong positive correlation with invertebrate diversity, making it a biologically relevant measure of the pools' carrying capacity. The significant effects of incoming detritus and incident light show that changes in local environments (e.g., the conversion of forest to cropping systems) strongly influence freshwater communities. Because changes in local environments do not affect detritivores and predators equally, one may expect functional shifts as sets of invertebrates with particular traits are replaced or complemented by other sets with different traits