Significance of Viral Activity For Regulating Heterotrophic Prokaryote Community Dynamics Along a Meridional Gradient of Stratification In the Northeast Atlantic Ocean

How microbial populations interact influences the availability and flux of organic carbon in the ocean. Understanding how these interactions vary over broad spatial scales is therefore a fundamental aim of microbial oceanography. In this study, we assessed variations in the abundances, production, virus and grazing induced mortality of heterotrophic prokaryotes during summer along a meridional gradient in stratification in the North Atlantic Ocean. Heterotrophic prokaryote abundance and activity varied with phytoplankton biomass, while the relative distribution of prokaryotic subpopulations (ratio of high nucleic acid fluorescent (HNA) and low nucleic acid fluorescent (LNA) cells) was significantly correlated to phytoplankton mortality mode (i.e., viral lysis to grazing rate ratio). Virus-mediate morality was the primary loss process regulating the heterotrophic prokaryotic communities (average 55% of the total mortality), which may be attributed to the strong top-down regulation of the bacterivorous protozoans. Host availability, encounter rate, and HNA:LNA were important factors regulating viral dynamics. Conversely, the abundance and activity of bacterivorous protozoans were largely regulated by temperature and turbulence. The ratio of total microbial mediated mortality to total available prokaryote carbon reveals that over the latitudinal gradient the heterotrophic prokaryote community gradually moved from a near steady state system regulated by high turnover in subtropical region to net heterotrophic production in the temperate region

Marine viruses:key players in marine ecosystems

Viruses were recognized as the causative agents of fish diseases, such as infectious pancreatic necrosis and Oregon sockeye disease, in the early 1960s [1], and have since been shown to be responsible for diseases in all marine life from bacteria to protists, mollusks, crustaceans, fish and mammals [2].[...

The fate of biogenic iron during a phytoplankton bloom induced by natural fertilisation: Impact of copepod grazing

International audienceThe impact of copepod grazing on Fe regeneration was investigated in a naturally iron fertilised area during KEOPS (Kerguelen Ocean and Plateau compared Study, Jan.-Feb. 2005). 55Fe labelled natural plankton assemblages (< 200 μm) were offered as food to copepod predators sampled in the field (Calanus propinquus, Rhincalanus gigas, Metridia lucens and Oithona frigida). Diatoms (Eucampia antarctica, Corethron inerme and Navicula spp.) constituted the bulk of the protists whereas microzooplankton (i.e. ciliates and dinoflagellates) were in very low abundance. Copepod grazing on phytoplankton ranged from 0.3 to 2.6 µgC ind-1 d-1 and reflected low utilisation of the food stocks (1-10% of total Chlorophyll a d-1) and low daily rations (0.2-3.3 % body C d-1). Copepod grazing resulted in a 1.7-2.3-fold increase in Fe regeneration. Fe speciation determined by extraction onto C18 columns showed that less than 1% of the regenerated Fe was complexed with hydrophobic organic ligands. This suggests that Fe was regenerated as inorganic species and/or bound to freely soluble organic ligands. The biogenic Fe budget established from our study and literature based data indicates that most of the primary production is recycled through the detrital pool, which represents the largest Fe pool (49% of total Fe). Our iron budget further indicates that mesozooplankton and diatoms represent the dominant Fe biomasses above the Kerguelen plateau. The rate of Fe regeneration accounts for half of the Fe demand, strengthening the need for new Fe sources to sustain the massive phytoplankton bloom above the Kerguelen plateau

Microscale spatial distributions of microbes and viruses in intertidal photosynthetic microbial mats

Intertidal photosynthetic microbial mats from the Wadden Sea island Schiermonnikoog were examined for microscale (millimetre) spatial distributions of viruses, prokaryotes and oxygenic photoautotrophs (filamentous cyanobacteria and benthic diatoms) at different times of the year. Abundances of viruses and prokaryotes were among the highest found in benthic systems (0.05–5.43 × 1010 viruses g−1 and 0.05–2.14 × 1010 prokaryotes g−1). The spatial distribution of viruses, prokaryotes and oxygenic photoautotrophs were highly heterogeneous at mm scales. The vertical distributions of both prokaryotic and viral abundances were related to the depth of the oxygenic photoautotrophic layer, implying that the photosynthetic mat fuelled the microbial processes in the underlying layer. Our data suggest that viruses could make an important component in these productive environments potentially affecting the biodiversity and nutrient cycling within the mat

Plasticity in dormancy behaviour of Calanoides acutus in Antarctic coastal waters

Copepods that enter dormancy, such as Calanoides acutus, are key primary consumers in Southern Ocean food webs where they convert a portion of the seasonal phytoplankton biomass into a longer-term energetic and physiological resource as wax ester (WE) reserves. We studied the seasonal abundance and lipid profiles of pre-adult and adult C. acutus in relation to phytoplankton dynamics on the Western Antarctic Peninsula. Initiation of dormancy occurred when WE unsaturation was relatively high, and chlorophyll a (Chl a) concentrations, predominantly attributable to diatoms, were reducing. Declines in WE unsaturation during the winter may act as a dormancy timing mechanism with increased Chl a concentrations likely to promote sedimentation that results in a teleconnection between the surface and deep water inducing ascent. A late summer diatom bloom was linked to early dormancy termination of females and a second spawning event. The frequency and duration of high biomass phytoplankton blooms may have consequences for the lifespan of the iteroparous C. acutus females (either 1 or 2 years) if limited by a total of two main spawning events. Late summer recruits, generated by a second spawning event, likely benefitted from lower predation and high phytoplankton food availability. The flexibility of copepods to modulate their life-cycle strategy in response to bottom-up and top-down conditions enables individuals to optimize their probability of reproductive success in the very variable environment prevalent in the Southern Ocean

Diapycnal mixing across the photic zone of the NE Atlantic

Variable physical conditions such as vertical turbulent exchange, internal wave, and mesoscale eddy action affect the availability of light and nutrients for phytoplankton (unicellular algae) growth. It is hypothesized that changes in ocean temperature may affect ocean vertical density stratification, which may hamper vertical exchange. In order to quantify variations in physical conditions in the northeast Atlantic Ocean, we sampled a latitudinal transect along 17 ± 5∘ W between 30 and 63∘ N in summer. A shipborne conductivity–temperature–depth (CTD) instrumented package was used with a custom-made modification of the pump inlet to minimize detrimental effects of ship motions on its data. Thorpe-scale analysis was used to establish turbulence values for the upper 500 m from three to six profiles obtained in a short CTD yo-yo, 3 to 5 h after local sunrise. From south to north, average temperature decreased together with stratification while turbulence values weakly increased or remained constant. Vertical turbulent nutrient fluxes did not vary significantly with stratification and latitude. This apparent lack of correspondence between turbulent mixing and temperature is likely due to internal waves breaking (increased stratification can support more internal waves), acting as a potential feedback mechanism. As this feedback mechanism mediates potential physical environment changes in temperature, global surface ocean warming may not affect the vertical nutrient fluxes to a large degree. We urge modellers to test this deduction as it could imply that the future summer phytoplankton productivity in stratified oligotrophic waters would experience little alterations in nutrient input from deeper waters

Shift from Carbon Flow through the Microbial Loop to the Viral Shunt in Coastal Antarctic Waters during Austral Summer

The relative flow of carbon through the viral shunt and the microbial loop is a pivotal factor controlling the contribution of secondary production to the food web and to rates of nutrient remineralization and respiration. The current study examines the significance of these processes in the coastal waters of the Antarctic during the productive austral summer months. Throughout the study a general trend towards lower bacterioplankton and heterotrophic nanoflagellate (HNF) abundances was observed, whereas virioplankton concentration increased. A corresponding decline of HNF grazing rates and shift towards viral production, indicative of viral infection, was measured. Carbon flow mediated by HNF grazing decreased by more than half from 5.7 µg C L−1 day−1 on average in December and January to 2.4 µg C L−1 day−1 in February. Conversely, carbon flow through the viral shunt increased substantially over the study from on average 0.9 µg C L−1 day−1 in December to 7.6 µg C L−1 day−1 in February. This study shows that functioning of the coastal Antarctic microbial community varied considerably over the productive summer months. In early summer, the system favors transfer of matter and energy to higher trophic levels via the microbial loop, however towards the end of summer carbon flow is redirected towards the viral shunt, causing a switch towards more recycling and therefore increased respiration and regeneration

Marine CDOM accumulation during a coastal Arctic mesocosm experiment: No response to elevated pCO2levels

A large-scale multidisciplinary mesocosm experiment in an Arctic fjord (Kongsfjorden, Svalbard; 78°56.2′N) was used to study Arctic marine food webs and biogeochemical elements cycling at natural and elevated future carbon dioxide (CO2) levels. At the start of the experiment, marine-derived chromophoric dissolved organic matter (CDOM) dominated the CDOM pool. Thus, this experiment constituted a convenient case to study production of autochthonous CDOM, which is typically masked by high levels of CDOM of terrestrial origin in the Arctic Ocean proper. CDOM accumulated during the experiment in line with an increase in bacterial abundance; however, no response was observed to increased pCO2 levels. Changes in CDOM absorption spectral slopes indicate that bacteria were most likely responsible for the observed CDOM dynamics. Distinct absorption peaks (at ~ 330 and ~ 360 nm) were likely associated with mycosporine-like amino acids (MAAs). Due to the experimental setup, MAAs were produced in absence of ultraviolet exposure providing evidence for MAAs to be considered as multipurpose metabolites rather than simple photoprotective compounds. We showed that a small increase in CDOM during the experiment made it a major contributor to total absorption in a range of photosynthetically active radiation (PAR, 400–700 nm) and, therefore, is important for spectral light availability and may be important for photosynthesis and phytoplankton groups composition in a rapidly changing Arctic marine ecosystem