Uv-visible characterization of gold exchanged in beta zeolite

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Dissipative Particle Dynamics with Energy Conservation

The stochastic differential equations for a model of dissipative particle dynamics with both total energy and total momentum conservation in the particle-particle interactions are presented. The corresponding Fokker-Planck equation for the evolution of the probability distribution for the system is deduced together with the corresponding fluctuation-dissipation theorems ensuring that the ab initio chosen equilibrium probability distribution for the relevant variables is a stationary solution. When energy conservation is included, the system can sustain temperature gradients and heat flow can be modeled.Comment: 7 pages, submitted to Europhys. Let

Particle-Based Mesoscale Hydrodynamic Techniques

Dissipative particle dynamics (DPD) and multi-particle collision (MPC) dynamics are powerful tools to study mesoscale hydrodynamic phenomena accompanied by thermal fluctuations. To understand the advantages of these types of mesoscale simulation techniques in more detail, we propose new two methods, which are intermediate between DPD and MPC -- DPD with a multibody thermostat (DPD-MT), and MPC-Langevin dynamics (MPC-LD). The key features are applying a Langevin thermostat to the relative velocities of pairs of particles or multi-particle collisions, and whether or not to employ collision cells. The viscosity of MPC-LD is derived analytically, in very good agreement with the results of numerical simulations.Comment: 7 pages, 2 figures, 1 tabl

A reduced model for shock and detonation waves. II. The reactive case

We present a mesoscopic model for reactive shock waves, which extends a previous model proposed in [G. Stoltz, Europhys. Lett. 76 (2006), 849]. A complex molecule (or a group of molecules) is replaced by a single mesoparticle, evolving according to some Dissipative Particle Dynamics. Chemical reactions can be handled in a mean way by considering an additional variable per particle describing a rate of reaction. The evolution of this rate is governed by the kinetics of a reversible exothermic reaction. Numerical results give profiles in qualitative agreement with all-atom studies

The ESCRT-III machinery participates in the production of extracellular vesicles and protein export during Plasmodium falciparum infection

Infection with Plasmodium falciparum enhances extracellular vesicle (EV) production in parasitized red blood cells (pRBCs), an important mechanism for parasite-to-parasite communication during the asexual intraerythrocytic life cycle. The endosomal sorting complex required for transport (ESCRT), and in particular the ESCRT-III sub-complex, participates in the formation of EVs in higher eukaryotes. However, RBCs have lost the majority of their organelles through the maturation process, including an important reduction in their vesicular network. Therefore, the mechanism of EV production in P. falciparum-infected RBCs remains to be elucidated. Here we demonstrate that P. falciparum possesses a functional ESCRT-III machinery activated by an alternative recruitment pathway involving the action of PfBro1 and PfVps32/PfVps60 proteins. Additionally, multivesicular body formation and membrane shedding, both reported mechanisms of EV production, were reconstituted in the membrane model of giant unilamellar vesicles using the purified recombinant proteins. Moreover, the presence of PfVps32, PfVps60 and PfBro1 in EVs purified from a pRBC culture was confirmed by super-resolution microscopy and dot blot assays. Finally, disruption of the PfVps60 gene led to a reduction in the number of the produced EVs in the KO strain and affected the distribution of other ESCRT-III components. Overall, our results increase the knowledge on the underlying molecular mechanisms during malaria pathogenesis and demonstrate that ESCRT-III P. falciparum proteins participate in EV production

Langevin Equation for the Rayleigh model with finite-ranged interactions

Both linear and nonlinear Langevin equations are derived directly from the Liouville equation for an exactly solvable model consisting of a Brownian particle of mass $M$ interacting with ideal gas molecules of mass $m$ via a quadratic repulsive potential. Explicit microscopic expressions for all kinetic coefficients appearing in these equations are presented. It is shown that the range of applicability of the Langevin equation, as well as statistical properties of random force, may depend not only on the mass ratio $m/M$ but also by the parameter $Nm/M$, involving the average number $N$ of molecules in the interaction zone around the particle. For the case of a short-ranged potential, when $N\ll 1$, analysis of the Langevin equations yields previously obtained results for a hard-wall potential in which only binary collisions are considered. For the finite-ranged potential, when multiple collisions are important ($N\gg 1$), the model describes nontrivial dynamics on time scales that are on the order of the collision time, a regime that is usually beyond the scope of more phenomenological models.Comment: 21 pages, 1 figure. To appear in Phys. Rev.

Tissue inhibitor of metalloproteinase-1 (TIMP-1) regulates mesenchymal stem cells through let-7f microRNA and Wnt/β-catenin signaling

Tissue inhibitor of metalloproteinases 1 (TIMP-1) is a matrix metalloproteinase (MMP)-independent regulator of growth and apoptosis in various cell types. The receptors and signaling pathways that are involved in the growth factor activities of TIMP-1, however, remain controversial. RNA interference of TIMP-1 has revealed that endogenous TIMP-1 suppresses the proliferation, metabolic activity, and osteogenic differentiation capacity of human mesenchymal stem cells (hMSCs). The knockdown of TIMP-1 in hMSCs activated the Wnt/β-catenin signaling pathway as indicated by the increased stability and nuclear localization of β-catenin in TIMP-1–deficient hMSCs. Moreover, TIMP-1 knockdown cells exhibited enhanced β-catenin transcriptional activity, determined by Wnt/β-catenin target gene expression analysis and a luciferase-based β-catenin– activated reporter assay. An analysis of a mutant form of TIMP-1 that cannot inhibit MMP indicated that the effect of TIMP-1 on β-catenin signaling is MMP independent. Furthermore, the binding of CD63 to TIMP-1 on the surface of hMSCs is essential for the TIMP-1–mediated effects on Wnt/β-catenin signaling. An array analysis of microRNAs (miRNAs) and transfection studies with specific miRNA inhibitors and mimics showed that let-7f miRNA is crucial for the regulation of β-catenin activity and osteogenic differentiation by TIMP-1. Let-7f was up-regulated in TIMP-1–depleted hMSCs and demonstrably reduced axin 2, an antagonist of β-catenin stability. Our results demonstrate that TIMP-1 is a direct regulator of hMSC functions and reveal a regulatory network in which let-7f modulates Wnt/β-catenin activity

Effects of post-bloom low light and girdling on fruit set of Vitis vinifera (L.) cv. ‘Riesling’ and Vitis labruscana (L.) cv. ‘Concord’

Aim: In grapevines, similarly to many woody crops, berry set is a crucial determinant for vine productivity. We reduced vine carbohydrate supply through shading and preventing phloem flow by girdling to investigate the effects on fruit set and berry weight, in field-grown ‘Concord’ (Vitis labruscana L.) and ‘Riesling’ (Vitis vinifera L.) grapevines. Methods and results: Carbon supply to the fruit was manipulated by shading (30% light transmissivity) individual shoots or shading and girdling. Girdling isolated the shoot and its fruit from possible carbohydrate supply from the rest of the vine. Shading was accomplished by covering shoots with a woven strip of shade cloth for four consecutive days in the period between flowering and 28 (‘Concord’) or 16 (‘Riesling’) days after flowering. The percentage of fruit set was calculated from estimated flower numbers using a photographic method and actual berry counts. Conclusions: In both ‘Concord’ and ‘Riesling’, short-time shading caused reductions in fruit set, although this effect was more severe in ‘Concord’. Both species were most sensitive to reductions in carbon supply during the period between 5 and 12 days after flowering. In ‘Concord’ vines, the effects caused by shading were greater with girdling probably because ‘Concord’ vines had higher crop level.  Significance and impact of the study: The results can be used as basis for modelling fruit set in grapevines

The ESCRT-III machinery participates in the production of extracellular vesicles and protein export during Plasmodium falciparum infection

Malaria is a disease caused by Plasmodium parasites that is still a leading cause of death in many low-income countries, and for which currently available therapeutic strategies are not succeeding in its control, let alone eradication. An interesting feature observed after Plasmodium invasion is the increase of extracellular vesicles (EVs) generated by parasitized red blood cells (pRBCs), which lack a vesicular trafficking that would explain EV production. Here, by combining different approaches, we demonstrated the participation of the endosomal sorting complex required for transport (ESCRT) machinery from Plasmodium falciparum in the production of EVs in pRBCs. Moreover, we were able to detect ESCRT-III proteins adjacent to the membrane of the host and in EVs purified from a pRBC culture, which shows the export of these proteins and their participation in EV production. Finally, the disruption of an ESCRT-III associated gene, Pfvps60, led to a significant reduction in the amount of EVs. Altogether, these results confirm ESCRT-III participation in EV production and provide novel information on the P. falciparum protein export mechanisms, which can be used for the development of new therapeutic strategies against malaria, based on the disruption of EV formation and trafficking

Integrating reproductive phenology in ecological niche models changed the predicted future ranges of a marine invader

Aim Phenology of a wide diversity of organisms has a dependency on climate, usually with reproductive periods beginning earlier in the year and lasting longer at lower latitudes. Temperature and day length are known environmental drivers of the reproductive timing of many species. Hence, reproductive phenology is sensitive to warming and is important to be considered for reliable predictions of species distributions. This is particularly relevant for rapidly spreading non-indigenous species (NIS). In this study, we forecast the future ranges of a NIS, the seaweed Sargassum muticum, including its reproductive phenology. Location Coastal areas of the Northern Hemisphere (Pacific and Atlantic oceans). Methods We used ecological niche modelling to predict the distribution of S. muticum under two scenarios forecasting limited (RCP 2.6) and severe (RCP 8.5) future climate changes. We then refined our predictions with a hybrid model using sea surface temperature constraints on reproductive phenology. Results Under the most severe climate change scenario, we predicted northward expansions which may have significant ecological consequences for subarctic coastal ecosystems. However, in lower latitudes, habitats currently occupied by S. muticum will no longer be suitable, creating opportunities for substantial community changes. The temperature constraints imposed by the reproductive window were shown to restrict the modelled future species expansion strongly. Under the RCP 8.5 scenario, the total range area was expected to increase by 61.75% by 2100, but only by 1.63% when the reproductive temperature window was considered. Main conclusions Altogether these results exemplify the need to integrate phenology better to improve the prediction of future distributional shifts at local and regional scales.Agência financiadora Número do subsídio Fundacao para a Ciencia e a Tecnologia CCMAR/Multi/04326/2019 FCT-BIODIVERSA/004/2015 FCT-SEAS-ERA/0001/2012 SFRH/BPD/107878/2015 SFRH/BPD/85040/2012 Erasmus Mundus Doctoral Programme MARES on Marine Ecosystem Health Conservation MARES_13_08 Pew Marineinfo:eu-repo/semantics/publishedVersio