Experimental Evaluation of Several Key Factors Affecting Root Biomass Estimation by 1500 MHz Ground-Penetrating Radar

Accurate quantification of coarse roots without disturbance represents a gap in our understanding of belowground ecology. Ground penetrating radar (GPR) has shown significant promise for coarse root detection and measurement, however root orientation relative to scanning transect direction, the difficulty identifying dead root mass, and the effects of root shadowing are all key factors affecting biomass estimation that require additional research. Specifically, many aspects of GPR applicability for coarse root measurement have not been tested with a full range of antenna frequencies. We tested the effects of multiple scanning directions, root crossover, and root versus soil moisture content in a sand-hill mixed oak community using a 1500 MHz antenna, which provides higher resolution than the oft used 900 MHz antenna. Combining four scanning directions produced a significant relationship between GPR signal reflectance and coarse root biomass (R2 = 0.75) (p \u3c 0.01) and reduced variability encountered when fewer scanning directions were used. Additionally, significantly fewer roots were correctly identified when their moisture content was allowed to equalize with the surrounding soil (p \u3c 0.01), providing evidence to support assertions that GPR cannot reliably identify dead root mass. The 1500 MHz antenna was able to identify roots in close proximity of each other as well as roots shadowed beneath shallower roots, providing higher precision than a 900 MHz antenna. As expected, using a 1500 MHz antenna eliminates some of the deficiency in precision observed in studies that utilized lower frequency antennas

Measuring soil frost depth in forest ecosystems with ground penetrating radar

Soil frost depth in forest ecosystems can be variable and depends largely on early winter air temperaturesand the amount and timing of snowfall. A thorough evaluation of ecological responses to seasonallyfrozen ground is hampered by our inability to adequately characterize the frequency, depth, durationand intensity of soil frost events. We evaluated the use of ground penetrating radar to nondestructivelydelineate soil frost under field conditions in three forest ecosystems. Soil frost depth was monitoredperiodically using a 900 MHz antenna in South Burlington, Vermont (SB), Sleepers River Watershed,North Danville, Vermont (SR) and Hubbard Brook Experimental Forest, New Hampshire (HBEF) duringwinter 2011–2012 on plots with snow and cleared of snow. GPR-based estimates were compared to datafrom thermistors and frost tubes, which estimate soil frost depth with a color indicating solution. In theabsence of snow, frost was initially detected at a depth of 8–10 cm. Dry snow up to 35 cm deep, enhancednear-surface frost detection, raising the minimum frost detection depth to 4–5 cm. The most favorablesurface conditions for GPR detection were bare soil or shallow dry snow where frost had penetrated to theminimum detectable depth. Unfavorable conditions included: standing water on frozen soil, wet snow,thawed surface soils and deep snow pack. Both SB and SR were suitable for frost detection most of thewinter, while HBEF was not. Tree roots were detected as point reflections and were readily discriminatedfrom continuous frost reflections. The bias of GPR frost depth measurements relative to thermistors wassite dependent averaging 0.1 cm at SB and 1.1 cm at SR, and was not significantly different than zero. Whenseparated by snow manipulation treatment at SR, overestimation of soil frost depth (5.5 cm) occurredon plots cleared of snow and underestimation (−1.5 cm) occurred on plots with snow. Despite somelimitations posed by site and surface suitability, GPR could be useful for adding a spatial component topre-installed soil frost monitoring networks

Airway epithelial specific deletion of Jun-N-terminal kinase 1 attenuates pulmonary fibrosis in two independent mouse models

© 2020 van der Velden et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. The stress-induced kinase, c-Jun-N-terminal kinase 1 (JNK1) has previously been implicated in the pathogenesis of lung fibrosis. However, the exact cell type(s) wherein JNK1 exerts its pro-fibrotic role(s) remained enigmatic. Herein we demonstrate prominent activation of JNK in bronchial epithelia using the mouse models of bleomycin- or AdTGFβ1-induced fibrosis. Furthermore, in lung tissues of patients with idiopathic pulmonary fibrosis (IPF), active JNK was observed in various regions including type I and type II pneumocytes and fibroblasts. No JNK activity was observed in adjacent normal tissue or in normal control tissue. To address the role of epithelial JNK1, we ablated Jnk1 form bronchiolar and alveolar type II epithelial cells using CCSP-directed Cre recombinase-mediated ablation of LoxP-flanked Jnk1 alleles. Our results demonstrate that ablation of Jnk1 from airway epithelia resulted in a strong protection from bleomycin- or adenovirus expressing active transforming growth factor beta-1 (AdTGFβ1)-induced fibrosis. Ablation of the Jnk1 allele at a time when collagen increases were already present showed a reversal of existing increases in collagen content. Epithelial Jnk1 ablation resulted in attenuation of mesenchymal genes and proteins in lung tissue and preserved expression of epithelial genes. Collectively, these data suggest that epithelial JNK1 contributes to the pathogenesis of pulmonary fibrosis. Given the presence of active JNK in lungs from patients with IPF, targeting JNK1 in airway epithelia may represent a potential treatment strategy to combat this devastating disease

Long-term survival of a woman with well differentiated papillary mesothelioma of the peritoneum: a case report and review of the literature

<p>Abstract</p> <p>Introduction</p> <p>Well-differentiated papillary mesothelioma of the peritoneum (WDPMP) is a rare subtype of epitheloid mesothelioma, which is usually seen in young women. WDPMP is generally considered of low malignant potential, however the long-term nature of the tumor remains poorly defined.</p> <p>Case presentation</p> <p>We describe the long-term follow-up of a 60-year-old woman of West African descent who has survived 24 years with WDPMP after receiving extensive local and systemic adjuvant chemotherapy. Her clinical course has included three exploratory laparotomies with intraperitoneal and intravenous chemotherapy over two decades. Her course was complicated by anthracycline-induced cardiomyopathy, for which she underwent an orthotopic heart transplant. Our patient is alive with stable radiological evidence of peritoneal disease, and continues to suffer from chronic abdominal pain.</p> <p>Conclusion</p> <p>No consensus exists regarding optimal treatment strategies for WDPMP. However, given the low malignant potential of the tumor, careful consideration should be made before proceeding with aggressive interventions. Further, long-term follow-up reports are required to fully characterize this tumor.</p

Emission Characteristics and Factors of Selected Odorous Compounds at a Wastewater Treatment Plant

This study was initiated to explore the emission characteristics of Reduced Sulfur Compounds (RSCs: hydrogen sulfide, methyl mercaptan, dimethyl sulfide, dimethyl disulfide), ammonia and trimethylamine from a Wastewater Treatment Plant (WWTP) located at Sun-Cheon, Chonlanam-Do in South Korea. The study also evaluates flux profiles of the six selected odorous compounds and their flux rates (μg/m2/min) and compares their emission characteristics. A Dynamic Flux Chamber DFC was used to measure fluxes of pollutants from the treatment plant. Quality control of odor samples using a non-reactive sulfur dioxide gas determined the time taken for DFC concentration to reach equilibrium. The reduced sulfur compounds were analyzed by interfacing gas chromatography with a Pulsed Flame Photometric Detector (PFPD). Air samples were collected in the morning and afternoon on one day during summer (August) and two days in winter (December and January). Their emission rates were determined and it was observed that during summer relatively higher amounts of the selected odorous compounds were emitted compared to winter. Air samples from primary settling basin, aeration basin, and final settling basin were tested and the total amount of selected odorous compounds emitted per wastewater ton was found to be 1344 μg/m3 from the selected treatment processes. It was also observed that, in this study, the dominant odor intensity contribution was caused by dimethyl disulfide (69.1%)

Biophysical controls on soil respiration in the dominant patch types of an old-growth, mixed-conifer forest

Little is known about biophysical controls on soil respiration in California’s Sierra Nevada oldgrowth, mixed-conifer forests. Using portable and automated soil respiration sampling units, we measured soil respiration rate (SRR) in three dominant patch types: closed canopy (CC), ceanothus-dominated patches (CECO), and open canopy (OC). SRR varied significantly among the patch types, ranging from 2.0 to 4.5 �μmol m�⁻² s�⁻¹ and from 0.9 to 2.9 �μmol m�⁻² s�⁻¹ during the 1999 and 2000 measuring periods, respectively, with the maximum in CECO and the minimum in OC. Multiple peaks of seasonal SRR were functions of soil temperature and moisture dynamics. The relationship between SRR and soil temperature switched from a positive to a negative correlation when soil moisture dropped from saturation to drought. Time lag, as a function of soil moisture, was included in an exponential model to assess the effects of soil moisture on SRR in this seasonal water-stressed ecosystem. The total soil C flux summed by an area-weighted average across all three patch types was 660 �± 163 g C m�⁻² from May to Oct. 2000. These results may be applicable to other water-stressed forests in the Mediterranean climate zone, and have implications for the conservation of soil carbon.Key Words: Soil CO₂ efflux, soil temperature, soil moisture, Sierra Nevada, California

Asbestos Burden Predicts Survival in Pleural Mesothelioma

Background: Malignant pleural mesothelioma (MPM) is a rapidly fatal asbestos-associated malignancy with a median survival time of &lt; 1 year following diagnosis. Treatment strategy is determined in part using known prognostic factors. Objective: The aim of this study was to examine the relationship between asbestos exposure and survival outcome in MPM in an effort to advance the understanding of the contribution of asbestos exposure to MPM prognosis. Methods: We studied incident cases of MPM patients enrolled through the International Mesothelioma Program at Brigham and Women’s Hospital in Boston, Massachusetts, using survival follow-up, self-reported asbestos exposure (n = 128), and a subset of cases (n = 80) with quantitative asbestos fiber burden measures. Results: Consistent with the established literature, we found independent, significant associations between male sex and reduced survival (p 1,099), suggested a survival duration association among these groups (p = 0.06). After adjusting for covariates in a Cox model, we found that patients with a low asbestos burden had a 3-fold elevated risk of death compared to patients with a moderate fiber burden [95% confidence interval (CI), 0.95–9.5; p = 0.06], and patients with a high asbestos burden had a 4.8-fold elevated risk of death (95% CI, 1.5–15.0; p < 0.01) versus those with moderate exposure. Conclusion: Our data suggest that patient survival is associated with asbestos fiber burden in MPM and is perhaps modified by susceptibility

The Effects of 11 Yr of CO2 Enrichment on Roots in a Florida Scrub-Oak Ecosystem

Uncertainty surrounds belowground plant responses to rising atmospheric CO2 because roots are difficult to measure, requiring frequent monitoring as a result of fine root dynamics and long-term monitoring as a result of sensitivity to resource availability. We report belowground plant responses of a scrub-oak ecosystem in Florida exposed to 11yr of elevated atmospheric CO2 using open-top chambers. We measured fine root production, turnover and biomass using minirhizotrons, coarse root biomass using ground-penetrating radar and total root biomass using soil cores. Total root biomass was greater in elevated than in ambient plots, and the absolute difference was larger than the difference aboveground. Fine root biomass fluctuated by more than a factor of two, with no unidirectional temporal trend, whereas leaf biomass accumulated monotonically. Strong increases in fine root biomass with elevated CO2 occurred after fire and hurricane disturbance. Leaf biomass also exhibited stronger responses following hurricanes. Responses after fire and hurricanes suggest that disturbance promotes the growth responses of plants to elevated CO2. Increased resource availability associated with disturbance (nutrients, water, space) may facilitate greater responses of roots to elevated CO2. The disappearance of responses in fine roots suggests limits on the capacity of root systems to respond to CO2 enrichment