A questionnaire to measure safety climate, fatigue, stress, violations and errors

This document contains psychometric data for an instrument that was used to measure safety climate, fatigue, stress, violations and errors in an aviation maintenance setting [Fogarty, G. J. & Buikstra, E. (2008). A test of direct and indirect pathways linking safety climate, psychological health, and unsafe behaviours. International Journal of Applied Aviation Studies, 8 (2), 199-210]. The document also contains the items used to form the various scales

A study on the discrimination of human skeletons using X-ray fluorescence and chemometric tools in chemical anthropology

Forensic anthropological investigations are often restricted in their outcomes by the resources allocated to them, especially in terms of positively identifying the victims exhumed from commingled mass graves. Commingled mass graves can be defined as those graves that contain a number of disarticulated human remains from different individuals that have been mixed by either natural processes or human interventions. The research developed aimed to apply the technique of non-destructive XRF analysis to test whether there is substantial differentiation within the trace elemental composition and their ratios of individuals to separate them using chemometric analysis. The results of the different atomic spectroscopic analyses combined with the use of multivariate analysis on a set of 5 skeletons produced a series of plots using Principal Component Analysis that helped to separate them with a high percentage of accuracy when two, three or four skeletons needed to be separated. Also, two new elemental ratios, Zn/Fe related to metabolic activities and K/Fe related to blood flow into the bone, have been defined for their use in forensic anthropology for the first time to aid in the separation. © 2013 Elsevier Ireland Ltd

Recovering parasites from mummies and coprolites: An epidemiological approach

In the field of archaeological parasitology, researchers have long documented the distribution of parasites in archaeological time and space through the analysis of coprolites and human remains. This area of research defined the origin and migration of parasites through presence/absence studies. By the end of the 20th century, the field of pathoecology had emerged as researchers developed an interest in the ancient ecology of parasite transmission. Supporting studies were conducted to establish the relationships between parasites and humans, including cultural, subsistence, and ecological reconstructions. Parasite prevalence data were collected to infer the impact of parasitism on human health. In the last few decades, a paleoepidemiological approach has emerged with a focus on applying statistical techniques for quantification. The application of egg per gram (EPG) quantification methods provide data about parasites’ prevalence in ancient populations and also identify the pathological potential that parasitism presented in different time periods and geographic places. Herein, we compare the methods used in several laboratories for reporting parasite prevalence and EPG quantification. We present newer quantification methods to explore patterns of parasite overdispersion among ancient people. These new methods will be able to produce more realistic measures of parasite infections among people of the past. These measures allow researchers to compare epidemiological patterns in both ancient and modern populations

Pathoecology of Chiribaya Parasitism

The excavations of Chiribaya culture sites in the Osmore drainage of southern Peru focused on the recovery of information about prehistoric disease, including parasitism. The archaeologists excavated human, dog, guinea pig, and llama mummies. These mummies were analyzed for internal and external parasites. The results of the analysis and reconstruction of prehistoric life from the excavations allows us to interpret the pathoecology of the Chiribaya culture

Evaluating elbow osteoarthritis within the prehistoric Tiwanaku state using generalized estimating equations (GEE).

OBJECTIVES:Studies of osteoarthritis (OA) in human skeletal remains can come with scalar problems. If OA measurement is noted as present or absent in one joint, like the elbow, results may not identify specific articular pathology data and the sample size may be insufficient to address research questions. If calculated on a per data point basis (i.e., each articular surface within a joint), results may prove too data heavy to comprehensively understand arthritic changes, or one individual with multiple positive scores may skew results and violate the data independence required for statistical tests. The objective of this article is to show that the statistical methodology Generalized Estimating Equations (GEE) can solve scalar issues in bioarchaeological studies. MATERIALS AND METHODS:Using GEE, a population-averaged statistical model, 1,195 adults from the core and one colony of the prehistoric Tiwanaku state (AD 500-1,100) were evaluated bilaterally for OA on the seven articular surfaces of the elbow joint. RESULTS:GEE linked the articular surfaces within each individual specimen, permitting the largest possible unbiased dataset, and showed significant differences between core and colony Tiwanaku peoples in the overall elbow joint, while also pinpointing specific articular surfaces with OA. Data groupings by sex and age at death also demonstrated significant variation. A pattern of elbow rotation noted for core Tiwanaku people may indicate a specific pattern of movement. DISCUSSION:GEE is effective and should be encouraged in bioarchaeological studies as a way to address scalar issues and to retain all pathology information

Geographically dispersed zoonotic tuberculosis in pre-contact South American human populations

Previous ancient DNA research has shown that Mycobacterium pinnipedii, which today causestuberculosis (TB) primarily in pinnipeds, infected human populations living in the coastalareas of Peru prior to European colonization. Skeletal evidence indicates the presence of TB inseveral pre-colonial South and North American populations with minimal access to marineresources— a scenario incompatible with TB transmission directly from infected pinnipeds ortheir tissues. In this study, we investigate the causative agent of TB in ten pre-colonial, non-coastal individuals from South America. We reconstruct M. pinnipedii genomes (10- to 15-foldmean coverage) from three contemporaneous individuals from inland Peru and Colombia,demonstrating the widespread dissemination of M. pinnipedii beyond the coast, either throughhuman-to-human and/or animal-mediated routes. Overall, our study suggests that TBtransmission in the pre-colonial era Americas involved a more complex transmission pathwaythan simple pinniped-to-human transfer

Re-analysis of the Levanluhta skeletal material : Sex and stature estimation of individuals in an Iron Age water burial in Finland

Levanluhta, an Iron Age water burial site in Finland, and its material consisting of commingled skeletal remains and artifacts, has been studied by several researchers over the past 100 years, resulting in multiple interpretations of the people and the site. Previous skeletal analyses have concluded that the majority of the individuals represented in the remains were females and children and were of relatively short stature, so possibly nutritionally deprived. This study re-analyzed the commingled adult human remains with updated methods. The methods applied in this study to estimate sex and stature were based on more representative European reference samples than the previously applied methods. The methods included morphology, osteometrics, and computed tomography (CT) scans. Our results indicated that depending on the reference data, the majority of the individual adult bones including os coxae (73%, n = 45) and long bones (humerus 83%-89%, n = 52; radius 72%-89%, n = 47; ulna 50%-65%, n = 58; femur 92%-100%, n = 25; tibia 77%-85%, n = 26) were classified as females based on their size and morphology. The cross-sectional bone properties of humerii, femora, and tibiae visualized using CT scanning also supported these findings. However, the cranial morphology did not show as clear female-biased sex ratio as other methods (42% females, 33% males, 24% undetermined, n = 33). In females, the mean stature based on the tibia (155.3 cm, n = 10) was within the range of the coeval European females and did not necessarily indicate nutritional deprivation, which is in line with previously published stable isotope findings from the site. The mean stature based on the tibia suggested that the Levanluhta males were short (164.0 cm, n = 3), but final interpretations were limited due to the small number of male individuals. The current study affirmed that the Levanluhta skeletal assemblage was female biased and gave new insights into interpretation of the stature.Peer reviewe