snRNP: Rich Nuclear Bodies in Hyacinthus orientalis L. Microspores and Developing Pollen Cells

The aim of the present work was the characterization of nuclear bodies in the microspore and developing pollen cells of Hyacinthus orientalis L.. The combination of Ag-NOR, immunofluorescence and immunogold techniques was used in this study. The obtained results showed the presence of highly agyrophylic extranucleolar bodies in microspore and developing pollen cells, which were finally identified as Cajal bodies. In all cases, a strong accumulation of snRNP-indicating molecules including TMG cap, Sm proteins and U2 snRNA, was observed in the examined nuclear bodies. In contrast to their number the size of the identified structures did not change significantly during pollen development. In the microspore and the vegetative cell of pollen grains CBs were more numerous than in the generative cell. At later stages of pollen development, a drastic decrease in CB number was observed and, just before anthesis, a complete lack of these structures was indicated in both pollen nuclei. On the basis of these results, as well as our previous studies, we postulate a strong relationship between Cajal body numbers and the levels of RNA synthesis and splicing machinery elements in microspore and developing pollen cells

Split, characteristic based semi‐implicit algorithm for laminar/turbulent incompressible flows

In an earlier paper, Zienkiewicz and Codina (Int. j. numer. methods fluids, 20, 869–885 (1995)) presented a general algorithm for the solution of both compressible and incompressible Navier–Stokes equations. The algorithm, based on operator splitting, permits arbitrary interpolation functions to be used while avoiding the Babŭska–Brezzi restriction. In addition, its characteristic based approach introduces a form of rational dissipation. Zienkiewicz et al. (Int. j. numer. methods fluids, 20, 887–913 (1995)) presented the application of this algorithm in its fully explicit form to various inviscid compressible flow problems. They also presented two incompressible flow problems solved by the fully explicit form, employing a pseudo compressibility. The present work deals with the application of the above algorithm it its semi‐implicit form to some incompressible flow benchmark problems. Further, it extends the methodology to turbulent flows by employing both one, and two equation turbulence models. A comparison of results with earlier investigations is presented. Other issues addressed in this study include the effect of additional diffusion terms present in the scheme for both laminar and turbulent flow problems and some practical difficulties associated with local time stepping

Shock capturing viscosities for the general fluid mechanics algorithm

The performance of different shock capturing viscosities has been examined using our general fluid mechanics algorithm. Four different schemes have been tested, both for viscous and inviscid compressible flow problems. Results show that the methods based on the second gradient of pressure give better performance in all situations. For instance, the method constructed from the nodal pressure values and consistent and lumped mass matrices is an excellent choice for inviscid problems. The method based on L2 projection is better than any other method in viscous flow computations. The residual based anisotropic method gives excellent performance in the supersonic range and gives better results in the hypersonic regime if a small amount of residual smoothing is use

Studies on optimizing potential energy functions for maximal intrinsic hyperpolarizability

We use numerical optimization to study the properties of (1) the class of one-dimensional potential energy functions and (2) systems of point charges in two-dimensions that yield the largest hyperpolarizabilities, which we find to be within 30% of the fundamental limit. We investigate the character of the potential energy functions and resulting wavefunctions and find that a broad range of potentials yield the same intrinsic hyperpolarizability ceiling of 0.709.Comment: 9 pages, 9 figure

Large Eddy Simulation of acoustic pulse propagation and turbulent flow interaction in expansion mufflers

A novel hybrid pressure-based compressible solver is developed and validated for low Mach number acoustic flow simulation. The solver is applied to the propagation of an acoustic pulse in a simple expansion muffler, a configuration frequently employed in HVAC and automotive exhaust systems. A set of benchmark results for experimental analysis of the simple expansion muffler both with and without flow are obtained to compare attenuation in forced pulsation for various mean-flow velocities. The experimental results are then used for validation of the proposed pressure-based compressible solver. Compressible, Unsteady Reynolds Averaged Navier-Stokes (URANS) simulation of a muffler with a mean through flow is conducted and results are presented to demonstrate inherent limitations associated with this approach. Consequently, a mixed synthetic inflow boundary condition is developed and validated for compressible Large Eddy Simulation (LES) of channel flow. The mixed synthetic boundary is then employed for LES of a simple expansion muffler to analyse the flow-acoustic and acoustic-pulse interactions inside the expansion muffler. The improvement in the prediction of vortex shedding inside the chamber is highlighted in comparison to the URANS method. Further, the effect of forced pulsation on flow-acoustic is observed in regard to the shift in Strouhal number inside the simple expansion muffler

Electronic Structures of Quantum Dots and the Ultimate Resolution of Integers

The orbital angular momentum L as an integer can be ultimately factorized as a product of prime numbers. We show here a close relation between the resolution of L and the classification of quantum states of an N-electron 2-dimensional system. In this scheme, the states are in essence classified into different types according to the m(k)-accessibility, namely the ability to get access to symmetric geometric configurations. The m(k)-accessibility is an universal concept underlying all kinds of 2-dimensional systems with a center. Numerical calculations have been performed to reveal the electronic structures of the states of the dots with 9 and 19 electrons,respectively. This paper supports the Laughlin wave finction and the composite fermion model from the aspect of symmetry.Comment: Two figure

A Finite Element Computation of the Gravitational Radiation emitted by a Point-like object orbiting a Non-rotating Black Hole

The description of extreme-mass-ratio binary systems in the inspiral phase is a challenging problem in gravitational wave physics with significant relevance for the space interferometer LISA. The main difficulty lies in the evaluation of the effects of the small body's gravitational field on itself. To that end, an accurate computation of the perturbations produced by the small body with respect the background geometry of the large object, a massive black hole, is required. In this paper we present a new computational approach based on Finite Element Methods to solve the master equations describing perturbations of non-rotating black holes due to an orbiting point-like object. The numerical computations are carried out in the time domain by using evolution algorithms for wave-type equations. We show the accuracy of the method by comparing our calculations with previous results in the literature. Finally, we discuss the relevance of this method for achieving accurate descriptions of extreme-mass-ratio binaries.Comment: RevTeX 4. 18 pages, 8 figure

Web-Based Activity Within a Sexual Health Economy: Observational Study.

BACKGROUND: Regular testing for sexually transmitted infections (STIs) is important to maintain sexual health. Self-sampling kits ordered online and delivered in the post may increase access, convenience, and cost-effectiveness. Sexual health economies may target limited resources more effectively by signposting users toward Web-based or face-to-face services according to clinical need. OBJECTIVE: The aim of this paper was to investigate the impact of two interventions on testing activity across a whole sexual health economy: (1) the introduction of open access Web-based STI testing services and (2) a clinic policy of triage and signpost online where users without symptoms who attended clinics for STI testing were supported to access the Web-based service instead. METHODS: Data on attendances at all specialist public sexual health providers in an inner-London area were collated into a single database. Each record included information on user demographics, service type accessed, and clinical activity provided, including test results. Clinical activity was categorized as a simple STI test (could be done in a clinic or online), a complex visit (requiring face-to-face consultation), or other. RESULTS: Introduction of Web-based services increased total testing activity across the whole sexual health economy by 18.47% (from 36,373 to 43,091 in the same 6-month period-2014-2015 and 2015-2016), suggesting unmet need for testing in the area. Triage and signposting shifted activity out of the clinic onto the Web-based service, with simple STI testing in the clinic decreasing from 16.90% (920/5443) to 12.25% (511/4172) of total activity, P<.001, and complex activity in the clinic increasing from 69.15% (3764/5443) to 74.86% (3123/4172) of total activity, P<.001. This intervention created a new population of online users with different demographic and clinical profiles from those who use Web-based services spontaneously. Some triage and signposted users (29.62%, 375/1266) did not complete the Web-based testing process, suggesting the potential for missed diagnoses. CONCLUSIONS: This evaluation shows that users can effectively be transitioned from face-to-face to Web-based services and that this introduces a new population to Web-based service use and changes the focus of clinic-based activity. Further development is underway to optimize the triage and signposting process to support test completion

A new methodology for anisotropic mesh refinement based upon error gradients

We introduce a new strategy for controlling the use of anisotropic mesh refinement based upon the gradients of an a posteriori approximation of the error in a computed finite element solution. The efficiency of this strategy is demonstrated using a simple anisotropic mesh adaption algorithm and the quality of a number of potential a posteriori error estimates is considered

mRNA accumulation in the Cajal bodies of the diplotene larch microsporocyte

In microsporocytes of the European larch, we demonstrated the presence of several mRNAs in spherical nuclear bodies. In the nuclei of microsporocytes, we observed up to 12 bodies, ranging from 0.5 to 6 μm in diameter, during the prophase of the first meiotic division. Our previous studies revealed the presence of polyadenylated RNA (poly(A) RNA) in these bodies, but did not confirm the presence of nascent transcripts or splicing factors of the SR family. The lack of these molecules precludes the bodies from being the sites of synthesis and early maturation of primary transcripts (Kołowerzo et al., Protoplasma 236:13–19, 2009). However, the bodies serve as sites for the accumulation of splicing machinery, including the Sm proteins and small nuclear RNAs. Characteristic ultrastructures and the molecular composition of the nuclear bodies, which contain poly(A) RNA, are indicative of Cajal bodies (CBs). Here, we demonstrated the presence of several housekeeping gene transcripts—α-tubulin, pectin methylesterase, peroxidase and catalase, ATPase, and inositol-3-phosphate synthase—in CBs. Additionally, we observed transcripts of the RNA polymerase II subunits RPB2 and RPB10 RNA pol II and the core spliceosome proteins mRNA SmD1, SmD2, and SmE. The co-localization of nascent transcripts and mRNAs indicates that mRNA accumulation/storage, particularly in CBs, occurs in the nucleus of microsporocytes