LES of flow through and around a finite patch of thin plates

Large eddy simulations (LESs) are performed for turbulent flow through and around a porous patch of thin vertical plates at a plate Reynolds number of Rep=5,800. The plates are arranged in a staggered pattern, presenting an elliptical planform and mimicking streamwise‐oriented blades of emergent vegetation. The immersed boundary method is employed to explicitly resolve the interaction between flow and plates. Three flow cases, each with a different number of plates within the same planform area, that is, different patch density, are studied. The Reynolds number based on freestream velocity and plate length is the same in all cases. Inspection of the distribution of velocity and vorticity in the horizontal plane reveals that downstream plates are significantly impacted by the wakes from upstream plates. It is therefore proposed that the plates can be divided into two groups based on the local flow characteristics, which are a function of position within the patch: a free group and a wake group. This classification is subsequently used in the quantitative analysis of boundary layer development and drag force at plate scale. The thickness and character of the simulated boundary layers on the plates differ significantly from predictions based on analytical or empirical relationships, which is due to wake effects and the finite length of the plates. The simulations demonstrate the so‐called sheltering effect; that is, the drag forces acting on downstream plates (in the wake group) are significantly lower than those acting on upstream plates, a result of the lower approach flow speed. Although the front‐area‐to‐lateral‐area ratio of the plates is low (1/40), pressure drag is observed to be larger than friction drag for each plate. The ratio of pressure drag to the total drag at patch scale shows only very little dependence on the plate density of the patch

Altered gene-expression profile in rat plasma and promoted body and brain development by environmental enrichment

Environmental enrichment (EE) refers to the exposure of laboratory animals to physical and social stimulation, which can improve animals’ well-being. The study was aimed to explore how the prenatal EE impacts affect the development, behavior, hormones and gene expression of the offspring. 28 pregnant rats were randomized into an EE group (EEG) housed in cages with EE or a control group (CG) housed in normal cages. Measurements included offspring development parameters (body weight, body length, and tail length) and behavior (open-field test, OFT), hormone levels (cortisol, dopamine, 5-HT, and growth hormone) and gene expression profile. Results showed that the development parameters of EEG offspring were statistically superior to the CG offspring. OFT count of EEG offspring was more than CG. EEG and CG offspring did not differ on cortisol, dopamine, 5-HT or growth factor. Gene expression profile chip test showed that 25 genes were up-regulated and 23 genes down-regulated in the EEG vs CG comparison, among which five GO annotations and four KEGG pathways were annotated. Findings indicate that EE during pregnancy could positively promote the body and nervous system development of offspring, involving the evidence for altered gene expression profile.Keywords: Environmental enrichment, rats, gene expression, behavior, developmentAfrican Journal of Biotechnology Vol. 12(20), pp. 3071-308

Analysis of Circulating Tumor Cells in Ovarian Cancer and Their Clinical Value as a Biomarker

Background/Aims: Monitoring the appearance and progression of tumors are important for improving the survival rate of patients with ovarian cancer. This study aims to examine circulating tumor cells (CTCs) in epithelial ovarian cancer (EOC) patients to evaluate their clinical significance in comparison to the existing biomarker CA125. Methods: Immuomagnetic bead screening, targeting epithelial antigens on ovarian cancer cells, combined with multiplex reverse transcriptase-polymerase chain reaction (Multiplex RT-PCR) was used to detect CTCs in 211 samples of peripheral blood (5 ml) from 109 EOC patients. CTCs and CA125 were measured in serial from 153 blood and 153 serum samples from 51 patients and correlations with treatment were analyzed. Immunohistochemistry was used to detect the expression of tumor-associated proteins in tumor tissues and compared with gene expression in CTCs from patients. Results: CTCs were detected in 90% (98/109) of newly diagnosed patients. In newly diagnosed patients, the number of CTCs was correlated with stage (p=0.034). Patients with stage IA-IB disease had a CTC positive rate of 93% (13/14), much higher than the CA125 positive rate of only 64% (9/14) for the same patients. The numbers of CTCs changed with treatment, and the expression of EpCAM (p=0.003) and HER2 (p=0.035) in CTCs was correlated with resistance to chemotherapy. Expression of EpCAM in CTCs before treatment was also correlated with overall survival (OS) (p=0.041). Conclusion: Detection of CTCs allows early diagnose and expression of EpCAM in CTC positive patients predicts prognosis and should be helpful for monitoring treatment

Whole-genome resequencing of 472 Vitis accessions for grapevine diversity and demographic history analyses

Despite the importance of grapevine cultivation in human history and the economic values of cultivar improvement, large-scale genomic variation data are lacking. Here the authors resequence 472 Vitis accessions and use the identified genetic variations for domestication history, demography, and GWAS analyses

Physical activity attenuates the influence of FTO variants on obesity risk: A meta-analysis of 218,166 adults and 19,268 children

Background: The FTO gene harbors the strongest known susceptibility locus for obesity. While many individual studies have suggested that physical activity (PA) may attenuate the effect of FTO on obesity risk, other studies have not been able to confirm this interaction. To confirm or refute unambiguously whether PA attenuates the association of FTO with obesity risk, we meta-analyzed data from 45 studies of adults (n = 218,166) and nine studies of children and adolescents (n = 19,268). Methods and Findings: All studies identified to have data on the FTO rs9939609 variant (or any proxy [r2>0.8]) and PA were invited to participate, regardless of ethnicity or age of the participants. PA was standardized by categorizing it into a dichotomous variable (physically inactive versus active) in each study. Overall, 25% of adults and 13% of children were categorized as inactive. Interaction analyses were performed within each study by including the FTO×PA interaction term in an additive model, adjusting for age and sex. Subsequently, random effects meta-analysis was used to pool the interaction terms. In adults, the minor (A-) allele of rs9939609 increased the odds of obesity by 1.23-fold/allele (95% CI 1.20-1.26), but PA attenuated this effect (pinteraction= 0.001). More specifically, the minor allele of rs9939609 increased the odds of obesity less in the physically active group (odds ratio = 1.22/allele, 95% CI 1.19-1.25) than in the inactive group (odds ratio = 1.30/allele, 95% CI 1.24-1.36). No such interaction was found in children and adolescents. Concl

Physical activity attenuates the influence of FTO variants on obesity risk : a meta-analysis of 218,166 adults and 19,268 children

BACKGROUND: The FTO gene harbors the strongest known susceptibility locus for obesity. While many individual studies have suggested that physical activity (PA) may attenuate the effect of FTO on obesity risk, other studies have not been able to confirm this interaction. To confirm or refute unambiguously whether PA attenuates the association of FTO with obesity risk, we meta-analyzed data from 45 studies of adults (n = 218,166) and nine studies of children and adolescents (n = 19,268). METHODS AND FINDINGS: All studies identified to have data on the FTO rs9939609 variant (or any proxy [r(2)>0.8]) and PA were invited to participate, regardless of ethnicity or age of the participants. PA was standardized by categorizing it into a dichotomous variable (physically inactive versus active) in each study. Overall, 25% of adults and 13% of children were categorized as inactive. Interaction analyses were performed within each study by including the FTO×PA interaction term in an additive model, adjusting for age and sex. Subsequently, random effects meta-analysis was used to pool the interaction terms. In adults, the minor (A-) allele of rs9939609 increased the odds of obesity by 1.23-fold/allele (95% CI 1.20-1.26), but PA attenuated this effect (p(interaction)  = 0.001). More specifically, the minor allele of rs9939609 increased the odds of obesity less in the physically active group (odds ratio  = 1.22/allele, 95% CI 1.19-1.25) than in the inactive group (odds ratio  = 1.30/allele, 95% CI 1.24-1.36). No such interaction was found in children and adolescents. CONCLUSIONS: The association of the FTO risk allele with the odds of obesity is attenuated by 27% in physically active adults, highlighting the importance of PA in particular in those genetically predisposed to obesity.Peer reviewe