Miniaturization of photonic waveguides by the use of left-handed materials

We propose the use of a left-handed material in an optical waveguide structure to reduce its thickness well below the wavelength of light. We demonstrate that a layer of left-handed material, added to the cladding of a planar waveguide rather than to its core, allows for good light confinement in a subwavelength thin waveguide. We attribute the observed behavior to the change in phase evolution of electromagnetic waves in the guide. This technique can be used for the miniaturization of photonic integrated circuits.Comment: 4 pages, 4 figure

X-ray diffraction reveals the intrinsic difference in the physical properties of membrane and soluble proteins.

Membrane proteins are distinguished from soluble proteins by their insertion into biological membranes. This insertion is achieved via a noticeable arrangement of hydrophobic amino acids that are exposed at the surface of the protein, and renders the interaction with the aliphatic tails of lipids more energetically favorable. This important difference between these two categories of proteins is the source of the need for a specific handling of membrane proteins, which transpired in the creation of new tools for their recombinant expression, purification and even crystallization. Following this line, we show here that crystals of membrane proteins display systematically higher diffraction anisotropy than those of soluble proteins. This phenomenon dramatically hampers structure solution and refinement, and has a strong impact on the quality of electron-density maps. A farther search for origins of this phenomenon showed that the type of crystallization, and thus the crystal packing, has no impact on anisotropy, nor does the nature or function of the membrane protein. Membrane proteins fully embedded within the membrane display equal anisotropy compared to the ones with extra membranous domains or fusions with soluble proteins. Overall, these results overturn common beliefs and call for a specific handling of their diffraction data

Au courant computation of the PDB to audit diffraction anisotropy of soluble and membrane proteins.

This data article makes available the informed computation of the whole Protein Data Bank (PDB) to investigate diffraction anisotropy on a large scale and to perform statistics. This data has been investigated in detail in "X-ray diffraction reveals the intrinsic difference in the physical properties of membrane and soluble proteins" [1]. Diffraction anisotropy is traditionally associated with absence of contacts in-between macromolecules within the crystals in a given direction of space. There are however many case that do not follow this empirical rule. To investigate and sort out this discrepancy, we computed diffraction anisotropy for every entry of the PDB, and put them in context of relevant metrics to compare X-ray diffraction in reciprocal space to the crystal packing in real space. These metrics were either extracted from PDB files when available (resolution, space groups, cell parameters, solvent content), or calculated using standard procedures (anisotropy, crystal contacts, presence of ligands). More specifically, we separated entries to compare soluble vs membrane proteins, and further separated the later in subcategories according to their insertion in the membrane, function, or type of crystallization (Type I vs Type II crystal packing). This informed database is being made available to investigators in the raw and curated formats that can be re-used for further downstream studies. This dataset is useful to test ideas and to ascertain hypothesis based on statistical analysis

Au courant computation of the PDB to audit diffraction anisotropy of soluble and membrane proteins

This data article makes available the informed computation of the whole Protein Data Bank (PDB) to investigate diffraction anisotropy on a large scale and to perform statistics. This data has been investigated in detail in “X-ray diffraction reveals the intrinsic difference in the physical properties of membrane and soluble proteins” [1]. Diffraction anisotropy is traditionally associated with absence of contacts in-between macromolecules within the crystals in a given direction of space. There are however many case that do not follow this empirical rule. To investigate and sort out this discrepancy, we computed diffraction anisotropy for every entry of the PDB, and put them in context of relevant metrics to compare X-ray diffraction in reciprocal space to the crystal packing in real space. These metrics were either extracted from PDB files when available (resolution, space groups, cell parameters, solvent content), or calculated using standard procedures (anisotropy, crystal contacts, presence of ligands). More specifically, we separated entries to compare soluble vs membrane proteins, and further separated the later in subcategories according to their insertion in the membrane, function, or type of crystallization (Type I vs Type II crystal packing). This informed database is being made available to investigators in the raw and curated formats that can be re-used for further downstream studies. This dataset is useful to test ideas and to ascertain hypothesis based on statistical analysis. Keywords: X-ray diffraction, Diffraction anisotropy, Membrane proteins, Macromolecule crystal

The effects of marine protected areas on ecosystem recovery and fisheries using a comparative modelling approach

17 pages, 11 figures, 1 table, supporting information https://doi.org/10.1002/aqc.3368.-- This is the peer reviewed version of the following article: Daniel Vilas, Marta Coll, Xavier Corrales, Jeroen Steenbeek, Chiara Piroddi, Antonio Calò, Antonio Di Franco, Toni Font, Paolo Guidetti, Alessandro Ligas, Josep Lloret, Giulia Prato, Rita Sahyoun, Paolo Sartor, Joachim Claudet, The effects of marine protected areas on ecosystem recovery and fisheries using a comparative modelling approach, Aquatic Conservation - Marine and Freshwater Ecosystems 30(10):1885-1901(2020), which has been published in final form at https://doi.org/10.1002/aqc.3368. This article may be used for non-commercial purposes in accordance with Wiley Terms and Conditions for Use of Self-Archived VersionsThe overexploitation of many marine resources and ecosystems calls for the development and implementation of measures to support their recovery and conservation. The potential contributions to support fisheries and ecosystem recovery were assessed at the local level of the three multiple-use marine protected areas (MPAs) of Cerbère-Banyuls, Medes Islands, and Cap de Creus, located in the north-western Mediterranean Sea. For each MPA, a food-web model accounting for each protection level (PL) was developed: the fully protected area (FPA), the partially protected area (PPA) and the unprotected area (UPA) surrounding the MPA. Using the resulting nine food-web models, the ecosystem structure and functioning of each PL were compared and characterized, differences and similarities within and among the three MPAs were assessed, and ecosystem response to full protection was evaluated for the three MPAs. Differences in terms of ecosystem structure and functioning were found among PLs. Overall, FPAs presented the most positive effect of protection in terms of ecosystem structure and functioning, followed by PPAs. However, the effects of protection on neighbouring UPAs were hardly noticeable. Similarities between Cerbère-Banyuls and Medes Islands MPAs were observed, while Cap de Creus MPA showed the least benefits from protection overall. These results are likely to be due to similarities in the configuration of the protected areas, the levels of enforcement and compliance, and the impact of recreational and small-scale fisheries allowed in the PPAs and UPAs. This study illustrates that well-enforced Mediterranean MPAs, even when small, can yield local positive impacts on the structure and functioning of marine ecosystems that can contribute to support local fisheriesThis work was funded by EU Research Project SAFENET project (“Sustainable Fisheries in EU Mediterranean Waters through Network of MPAs.” Call for proposals MARE/2014/41, Grant Agreement n. 721708). D. Vilas benefited from a Short Term Scientific Mission by the COST Action MarCons (CA15121)With the funding support of the ‘Severo Ochoa Centre of Excellence’ accreditation (CEX2019-000928-S), of the Spanish Research Agency (AEI

The effects of marine protected areas on ecosystem recovery and fisheries using a comparative modelling approach

17 pages, 11 figures, 1 table, supporting information https://doi.org/10.1002/aqc.3368.-- This is the peer reviewed version of the following article: Daniel Vilas, Marta Coll, Xavier Corrales, Jeroen Steenbeek, Chiara Piroddi, Antonio Calò, Antonio Di Franco, Toni Font, Paolo Guidetti, Alessandro Ligas, Josep Lloret, Giulia Prato, Rita Sahyoun, Paolo Sartor, Joachim Claudet, The effects of marine protected areas on ecosystem recovery and fisheries using a comparative modelling approach, Aquatic Conservation - Marine and Freshwater Ecosystems 30(10):1885-1901(2020), which has been published in final form at https://doi.org/10.1002/aqc.3368. This article may be used for non-commercial purposes in accordance with Wiley Terms and Conditions for Use of Self-Archived VersionsThe overexploitation of many marine resources and ecosystems calls for the development and implementation of measures to support their recovery and conservation. The potential contributions to support fisheries and ecosystem recovery were assessed at the local level of the three multiple-use marine protected areas (MPAs) of Cerbère-Banyuls, Medes Islands, and Cap de Creus, located in the north-western Mediterranean Sea. For each MPA, a food-web model accounting for each protection level (PL) was developed: the fully protected area (FPA), the partially protected area (PPA) and the unprotected area (UPA) surrounding the MPA. Using the resulting nine food-web models, the ecosystem structure and functioning of each PL were compared and characterized, differences and similarities within and among the three MPAs were assessed, and ecosystem response to full protection was evaluated for the three MPAs. Differences in terms of ecosystem structure and functioning were found among PLs. Overall, FPAs presented the most positive effect of protection in terms of ecosystem structure and functioning, followed by PPAs. However, the effects of protection on neighbouring UPAs were hardly noticeable. Similarities between Cerbère-Banyuls and Medes Islands MPAs were observed, while Cap de Creus MPA showed the least benefits from protection overall. These results are likely to be due to similarities in the configuration of the protected areas, the levels of enforcement and compliance, and the impact of recreational and small-scale fisheries allowed in the PPAs and UPAs. This study illustrates that well-enforced Mediterranean MPAs, even when small, can yield local positive impacts on the structure and functioning of marine ecosystems that can contribute to support local fisheriesThis work was funded by EU Research Project SAFENET project (“Sustainable Fisheries in EU Mediterranean Waters through Network of MPAs.” Call for proposals MARE/2014/41, Grant Agreement n. 721708). D. Vilas benefited from a Short Term Scientific Mission by the COST Action MarCons (CA15121)With the funding support of the ‘Severo Ochoa Centre of Excellence’ accreditation (CEX2019-000928-S), of the Spanish Research Agency (AEI

Impact of Mediterranean diet on metabolic syndrome, cancer and longevity

Obesity symbolizes a major public health problem. Overweight and obesity are associated to the occurrence of the metabolic syndrome and to adipose tissue dysfunction. The adipose tissue is metabolically active and an endocrine organ, whose dysregulation causes a low-grade inflammatory state and ectopic fat depositions. The Mediterranean Diet represents a possible therapy for metabolic syndrome, preventing adiposopathy or "sick fat" formation.The Mediterranean Diet exerts protective effects in elderly subjects with and without baseline of chronic diseases. Recent studies have demonstrated a relationship between cancer and obesity. In the US, diet represents amount 30-35% of death causes related to cancer. Currently, the cancer is the second cause of death after cardiovascular diseases worldwide. Furthermore, populations living in the Mediterranean area have a decreased incidence of cancer compared with populations living in Northern Europe or the US, likely due to healthier dietary habits. The bioactive food components have a potential preventive action on cancer. The aims of this review are to evaluate the impact of Mediterranean Diet on onset, progression and regression of metabolic syndrome, cancer and on longevity