Gray Wolves, Canis lupus, Killed by Cougars, Puma concolor, and a Grizzly Bear, Ursus arctos, in Montana, Alberta, and Wyoming

Four cases where large predators caused Grey Wolf (Canis lupus) mortality are recorded. We describe two incidents of Cougars (Puma concolar) killing Wolves in Montana and one incident of a Cougar killing a Wolf in Alberta. We report the first recorded incident of a Grizzly Bear (Ursus arctos) killing a Wolf in the western United States

Gray Wolves, Canis lupus, Killed by Cougars, Puma concolor, and a Grizzly Bear, Ursus arctos, in Montana, Alberta, and Wyoming

Four cases where large predators caused Grey Wolf (Canis lupus) mortality are recorded. We describe two incidents of Cougars (Puma concolar) killing Wolves in Montana and one incident of a Cougar killing a Wolf in Alberta. We report the first recorded incident of a Grizzly Bear (Ursus arctos) killing a Wolf in the western United States

A new specimen of the ornithischian dinosaur Hesperosaurus mjosi from the Upper Jurassic Morrison Formation of Montana, U.S.A., and implications for growth and size in Morrison stegosaurs

Stegosauria is a clade of ornithischian dinosaurs characterized by a bizarre array of dermal armor that extends from the neck to the end of the tail. Two genera of stegosaur are currently recognised from North America: the well-known Stegosaurus stenops and the much rarer Hesperosaurus mjosi. A new specimen of Hesperosaurus mjosi was discovered in some of the most northerly outcrops of the Upper Jurassic Morrison Formation near Livingston, Montana. The new specimen includes cranial, vertebral, and appendicular material as well as a dermal plate, and the excellent state of preservation of the palate reveals new anatomical information about this region in stegosaurs. Histological examination of the tibia indicates that the individual was not skeletally mature at time of death. Comparison with previously studied Stegosaurus and Hesperosaurus individuals indicates that Hesperosaurus mjosi may have been a smaller species than Stegosaurus stenops. Physiological processes scale with body mass, M, according to the relationship M0.75 in extant megaherbivores; thus, larger animals are better able to cope with more arid environments where forage is less abundant. Under this scenario, it is possible that Stegosaurus stenops and Hesperosaurus mjosi were environmentally partitioned, with the larger S. stenops occupying more arid environments. Analyses of the temporal overlap and latitudinal range of Morrison stegosaurs would allow this hypothesis to be investigated.The attached document is the authors’ final accepted version of the journal article. You are advised to consult the publisher’s version if you wish to cite from it

Developing and Evaluating Genetic Monitoring Tools for Sonoran Pronghorn (Antilocapra americana sonoriensis)

The Sonoran desert is home to the Sonoran pronghorn (Antilocapra americana sonoriensis), an endangered species with populations once numbering in the thousands and now reduced to fewer than 300. Monitoring of the population is limited to biennial counts which provide abundance estimates, but do not provide information on other demographic parameters. Pronghorn are sensitive to stress from physical capture making them good candidates for using noninvasive genetic methods. Noninvasive genetic sampling has commonly been utilized in carnivores, but is less developed in ungulates. We designed and implemented a method combining noninvasive genetic sampling and capture-recapture (NGS-CR) methods to monitor Sonoran pronghorn. One weakness of fecal DNA analysis methods is the difficulty of aging individuals with noninvasive genetic samples. We developed a model using several measures of pellet morphology to reliably classify pellets from fawn versus yearling and fawn versus adult using five-fold cross validation. We used our method of NGS-CR to estimate abundance and apparent annual survival and assessed the accuracy and precision of our estimates using capture-recapture simulations. While the inference of our estimates were limited to the population using watering holes (drinkers), our results indicate this methodology provided reasonable and precise abundance estimates though biased slightly low. Combining this method with radio-telemetry data would further improve the accuracy of the population estimate. As the population continues to expand, this method allows managers to monitor trends in abundance and survival as an indicator of the population�s trajectory, as opposed to current aerial survey methods, which provide abundance estimates, but are costly and do not provide information on survival or other demographic parameters.Thesis (Ph.D., Natural Resources) -- University of Idaho, 201

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Data from: Evaluating the interaction of faecal pellet deposition rates and DNA degradation rates to optimize sampling design for DNA-based mark-recapture analysis of Sonoran pronghorn

Knowledge of population demographics is important for species management but can be challenging in low-density, wide-ranging species. Population monitoring of the endangered Sonoran pronghorn (Antilocapra americana sonoriensis) is critical for assessing the success of recovery efforts, and noninvasive DNA sampling (NDS) could be more cost-effective and less intrusive than traditional methods. We evaluated faecal pellet deposition rates and faecal DNA degradation rates to maximize sampling efficiency for DNA-based mark–recapture analyses. Deposition data were collected at five watering holes using sampling intervals of 1–7 days and averaged one pellet pile per pronghorn per day. To evaluate nuclear DNA (nDNA) degradation, 20 faecal samples were exposed to local environmental conditions and sampled at eight time points from one to 124 days. Average amplification success rates for six nDNA microsatellite loci were 81% for samples on day one, 63% by day seven, 2% by day 14 and 0% by day 60. We evaluated the efficiency of different sampling intervals (1–10 days) by estimating the number of successful samples, success rate of individual identification and laboratory costs per successful sample. Cost per successful sample increased and success and efficiency declined as the sampling interval increased. Results indicate NDS of faecal pellets is a feasible method for individual identification, population estimation and demographic monitoring of Sonoran pronghorn. We recommend collecting samples >7 days old and estimate that a sampling interval of 4–7 days in summer conditions (i.e. extreme heat and exposure to UV light) will achieve desired sample sizes for mark–recapture analysis while also maximizing efficiency

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Whole-genome sequencing reveals host factors underlying critical COVID-19

Altres ajuts: Department of Health and Social Care (DHSC); Illumina; LifeArc; Medical Research Council (MRC); UKRI; Sepsis Research (the Fiona Elizabeth Agnew Trust); the Intensive Care Society, Wellcome Trust Senior Research Fellowship (223164/Z/21/Z); BBSRC Institute Program Support Grant to the Roslin Institute (BBS/E/D/20002172, BBS/E/D/10002070, BBS/E/D/30002275); UKRI grants (MC_PC_20004, MC_PC_19025, MC_PC_1905, MRNO2995X/1); UK Research and Innovation (MC_PC_20029); the Wellcome PhD training fellowship for clinicians (204979/Z/16/Z); the Edinburgh Clinical Academic Track (ECAT) programme; the National Institute for Health Research, the Wellcome Trust; the MRC; Cancer Research UK; the DHSC; NHS England; the Smilow family; the National Center for Advancing Translational Sciences of the National Institutes of Health (CTSA award number UL1TR001878); the Perelman School of Medicine at the University of Pennsylvania; National Institute on Aging (NIA U01AG009740); the National Institute on Aging (RC2 AG036495, RC4 AG039029); the Common Fund of the Office of the Director of the National Institutes of Health; NCI; NHGRI; NHLBI; NIDA; NIMH; NINDS.Critical COVID-19 is caused by immune-mediated inflammatory lung injury. Host genetic variation influences the development of illness requiring critical care or hospitalization after infection with SARS-CoV-2. The GenOMICC (Genetics of Mortality in Critical Care) study enables the comparison of genomes from individuals who are critically ill with those of population controls to find underlying disease mechanisms. Here we use whole-genome sequencing in 7,491 critically ill individuals compared with 48,400 controls to discover and replicate 23 independent variants that significantly predispose to critical COVID-19. We identify 16 new independent associations, including variants within genes that are involved in interferon signalling (IL10RB and PLSCR1), leucocyte differentiation (BCL11A) and blood-type antigen secretor status (FUT2). Using transcriptome-wide association and colocalization to infer the effect of gene expression on disease severity, we find evidence that implicates multiple genes-including reduced expression of a membrane flippase (ATP11A), and increased expression of a mucin (MUC1)-in critical disease. Mendelian randomization provides evidence in support of causal roles for myeloid cell adhesion molecules (SELE, ICAM5 and CD209) and the coagulation factor F8, all of which are potentially druggable targets. Our results are broadly consistent with a multi-component model of COVID-19 pathophysiology, in which at least two distinct mechanisms can predispose to life-threatening disease: failure to control viral replication; or an enhanced tendency towards pulmonary inflammation and intravascular coagulation. We show that comparison between cases of critical illness and population controls is highly efficient for the detection of therapeutically relevant mechanisms of disease