Tracing the envelopes around embedded low-mass young stellar objects with HCO+ and millimeter-continuum observations

Interferometer observations of millimeter-continuum (OVRO) and single-dish observations of HCO+ and H13CO+ J=1-0, 3-2, and 4-3 (JCMT, IRAM 30m) are presented of nine embedded low-mass young stellar objects (YSOs) in Taurus. All nine objects are detected at 3.4 and 2.7 mm, with fluxes of 4-200 mJy, and consist of unresolved (<3 arcsec) point sources, plus, toward about half of the objects, an extended envelope. The point sources likely are circumstellar disks, showing that these are established early in the embedded phase. Literature values of 1.1 mm continuum emission are used to trace the envelopes, carrying 0.001-0.26 M(sol). In HCO+, the 1-0 lines trace the surrounding clouds, while the 3-2 and 4-3 are concentrated toward the sources with intensities well correlated with the envelope flux. An HCO+/H2 abundance of 1.2e-8 is derived. The HCO+ line strengths and envelope fluxes can be fit simultaneously with the simple collapse model of Shu (1977), and related density power laws with slopes p=1-3. As an indicator of the relative evolutionary phase of a YSO, the ratio of HCO+ 3-2 line intensity over bolometric luminosity is proposed, which is roughly proportional to the current ratio of envelope over stellar mass. It is concluded that HCO+ 3-2 and 4-3 are excellent tracers of the early embedded phase of star formation.Comment: 45 pages, 10 figures, ApJ/AASLaTeX. To be published in The Astrophysical Journa

Structural Congruency of Ligand Binding to the Insulin and Insulin/Type 1 Insulin-like Growth Factor Hybrid Receptors

SummaryThe homodimeric insulin and type 1 insulin-like growth factor receptors (IR and IGF-1R) share a common architecture and each can bind all three ligands within the family: insulin and insulin-like growth factors I and II (IGF-I and IFG-II). The receptor monomers also assemble as heterodimers, the primary ligand-binding sites of which each comprise the first leucine-rich repeat domain (L1) of one receptor type and an α-chain C-terminal segment (αCT) of the second receptor type. We present here crystal structures of IGF-I bound to such a hybrid primary binding site and of a ligand-free version of an IR αCT peptide bound to an IR L1 plus cysteine-rich domain construct (IR310.T). These structures, refined at 3.0-Å resolution, prove congruent to respective existing structures of insulin-complexed IR310.T and the intact apo-IR ectodomain. As such, they provide key missing links in the emerging, but sparse, repertoire of structures defining the receptor family

Envelope structure of deeply embedded young stellar objects in the Serpens Molecular Cloud

Aperture synthesis and single-dish (sub) millimeter molecular lines and continuum observations reveal in great detail the envelope structure of deeply embedded young stellar objects (SMM1, SMM2, SMM3, SMM4) in the densely star-forming Serpens Molecular Cloud. Resolved millimeter continuum emission constrains the density structure to a radial power law with index -2.0 +/- 0.5, and envelope masses of 8.7, 3.0, and 5.3 M_sol for SMM1, SMM3, and SMM4. The core SMM2 does not seem to have a central condensation and may not have formed a star yet. The molecular line observations can be described by the same envelope model, if an additional, small amount of warm (100 K) material is included. This probably corresponds to the inner few hundred AU of the envelope were the temperature is high. In the interferometer beam, the molecular lines reveal the inner regions of the envelopes, as well as interaction of the outflow with the surrounding envelope. Bright HCO+ and HCN emission outlines the cavities, while SiO and SO trace the direct impact of the outflow on ambient gas. Taken together, these observations provide a first comprehensive view of the physical and chemical structure of the envelopes of deeply embedded young stellar objects in a clustered environment on scales between 1000 and 10,000 AU.Comment: 46 pages, incl. 12 postscript figures, uses ApJ latex and psfig macro

Principals' reports of adults' alcohol use in Australian secondary schools

Background - Schools provide opportunities for parents and the wider community to connect and support the physical and emotional wellbeing of their children. Schools therefore have the potential to play a role in the socialisation of alcohol use through school policies and practices regarding consumption of alcohol by adults at school events in the presence of children. Methods - This survey was undertaken to a) compare the extent to which alcohol is used at secondary school events, when children are present, in the states of New South Wales (NSW) and Victoria (VIC), Australia; b) describe principals’ level of agreement with these practices; c) their awareness of state policies on this issue; and d) the predictors of such events. A random sample of secondary schools, stratified to represent metropolitan and non-metropolitan schools were invited to participate. Bivariate and multivariate analysis were conducted with p values < 0.05 considered significant. Results - A total of 241 (43 %) schools consented to participate in the study. Fifteen percent of participating NSW schools and 57 % of VIC schools held at least one event in which alcohol was consumed by adults in the presence of children in the year before the survey. Of the 100 reported events, 78 % were Year 12 graduation dinners, and 18 % were debutante balls. Compared to NSW principals, VIC principals were significantly more likely to agree with the use of alcohol at these events; significantly less likely to be aware of their state education department policy on this issue; have a policy at their own school or support policy that prohibits alcohol use at such events; and less likely to report having enough Information to make decisions about this. Conclusions - There is a growing focus on adults’ use of alcohol at school events when children are present. Schools can play an important role in educating and socialising children about alcohol via both the curriculum and policies regarding adults’ alcohol use at school events. Findings from this study suggest education department and school-based policies that prohibit or restrict the use of alcohol, are significant predictors of adults’ alcohol use at school events when children are present

Riverine macrosystems ecology: sensitivity, resistance, and resilience of whole river basins with human alterations

Riverine macrosystems are described here as watershed-scale networks of connected and interacting riverine and upland habitat patches. Such systems are driven by variable responses of nutrients and organisms to a suite of global and regional factors (eg climate, human social systems) interacting with finer-scale variations in geology, topography, and human modifications. We hypothesize that spatial heterogeneity, connectivity, and asynchrony among these patches regulate ecological dynamics of whole networks, altering system sensitivity, resistance, and resilience. Long-distance connections between patches may be particularly important in riverine macrosystems, shaping fundamental system properties. Furthermore, the type, extent, intensity, and spatial configuration of human activities (eg land-use change, dam construction) influence watershed-wide ecological properties through effects on habitat heterogeneity and connectivity at multiple scales. Thus, riverine macrosystems are coupled social–ecological systems with feedbacks that influence system responses to environmental change and the sustainable delivery of ecosystem services

FVCOM validation experiments : comparisons with ROMS for three idealized barotropic test problems

Author Posting. © American Geophysical Union, 2008. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research 113 (2008): C07042, doi:10.1029/2007JC004557.The unstructured-grid Finite-Volume Coastal Ocean Model (FVCOM) is evaluated using three idealized benchmark test problems: the Rossby equatorial soliton, the hydraulic jump, and the three-dimensional barotropic wind-driven basin. These test cases examine the properties of numerical dispersion and damping, the performance of the nonlinear advection scheme for supercritical flow conditions, and the accuracy of the implicit vertical viscosity scheme in barotropic settings, respectively. It is demonstrated that FVCOM provides overall a second-order spatial accuracy for the vertically averaged equations (i.e., external mode), and with increasing grid resolution the model-computed solutions show a fast convergence toward the analytic solutions regardless of the particular triangulation method. Examples are provided to illustrate the ability of FVCOM to facilitate local grid refinement and speed up computation. Comparisons are also made between FVCOM and the structured-grid Regional Ocean Modeling System (ROMS) for these test cases. For the linear problem in a simple rectangular domain, i.e., the wind-driven basin case, the performance of the two models is quite similar. For the nonlinear case, such as the Rossby equatorial soliton, the second-order advection scheme used in FVCOM is almost as accurate as the fourth-order advection scheme implemented in ROMS if the horizontal resolution is relatively high. FVCOM has taken advantage of the new development in computational fluid dynamics in resolving flow problems containing discontinuities. One salient feature illustrated by the three-dimensional barotropic wind-driven basin case is that FVCOM and ROMS simulations show different responses to the refinement of grid size in the horizontal and in the vertical.For this work, H. Huang and G. Cowles were supported by the Massachusetts Marine Fisheries Institute (MFI) through NOAA grants DOC/NOAA/NA04NMF4720332 and DOC/ NOAA/NA05NMF472113; C. Chen was supported by NSF grants (OCE0234545, OCE0606928, OCE0712903, OCE0732084, and OCE0726851), NOAA grants (NA160P2323, NA06RG0029, and NA960P0113), MIT Sea grant (2006-RC-103), and Georgia Sea grant (NA26RG0373 and NA66RG0282); C. Winant was supported through NSF grant OCE-0726673; R. Beardsley was supported through NSF OCE—0227679 and the WHOI Smith Chair; K. Hedstrom was supported through NASA grant NAG13– 03021 and the Arctic Region Supercomputing Center; and D. Haidvogel was supported through grants ONR N00014- 03-1-0683 and NSF OCE 043557

A high-resolution map of human evolutionary constraint using 29 mammals.

The comparison of related genomes has emerged as a powerful lens for genome interpretation. Here we report the sequencing and comparative analysis of 29 eutherian genomes. We confirm that at least 5.5% of the human genome has undergone purifying selection, and locate constrained elements covering ∼4.2% of the genome. We use evolutionary signatures and comparisons with experimental data sets to suggest candidate functions for ∼60% of constrained bases. These elements reveal a small number of new coding exons, candidate stop codon readthrough events and over 10,000 regions of overlapping synonymous constraint within protein-coding exons. We find 220 candidate RNA structural families, and nearly a million elements overlapping potential promoter, enhancer and insulator regions. We report specific amino acid residues that have undergone positive selection, 280,000 non-coding elements exapted from mobile elements and more than 1,000 primate- and human-accelerated elements. Overlap with disease-associated variants indicates that our findings will be relevant for studies of human biology, health and disease

Validation of MIPAS HNO3 operational data

Nitric acid (HNO3) is one of the key products that are operationally retrieved by the European Space Agency (ESA) from the emission spectra measured by the Michelson Interferometer for Passive Atmospheric Sounding (MIPAS) onboard ENVISAT. The product version 4.61/4.62 for the observation period between July 2002 and March 2004 is validated by comparisons with a number of independent observations from ground-based stations, aircraft/balloon campaigns, and satellites. Individual HNO3 profiles of the ESA MIPAS level-2 product show good agreement with those of MIPAS-B and MIPAS-STR (the balloon and aircraft version of MIPAS, respectively), and the balloon-borne infrared spectrometers MkIV and SPIRALE, mostly matching the reference data within the combined instrument error bars. In most cases differences between the correlative measurement pairs are less than 1 ppbv (5-10%) throughout the entire altitude range up to about 38 km (similar to 6 hPa), and below 0.5 ppbv (15-20% or more) above 30 km (similar to 17 hPa). However, differences up to 4 ppbv compared to MkIV have been found at high latitudes in December 2002 in the presence of polar stratospheric clouds. The degree of consistency is further largely affected by the temporal and spatial coincidence, and differences of 2 ppbv may be observed between 22 and 26 km (similar to 50 and 30 hPa) at high latitudes near the vortex boundary, due to large horizontal inhomogeneity of HNO3. Similar features are also observed in the mean differences of the MIPAS ESA HNO3 VMRs with respect to the ground-based FTIR measurements at five stations, aircraft-based SAFIRE-A and ASUR, and the balloon campaign IBEX. The mean relative differences between the MIPAS and FTIR HNO3 partial columns are within +/- 2%, comparable to the MIPAS systematic error of similar to 2%. For the vertical profiles, the biases between the MIPAS and FTIR data are generally below 10% in the altitudes of 10 to 30 km. The MIPAS and SAFIRE HNO3 data generally match within their total error bars for the mid and high latitude flights, despite the larger atmospheric inhomogeneities that characterize the measurement scenario at higher latitudes. The MIPAS and ASUR comparison reveals generally good agreements better than 10-13% at 20-34 km. The MIPAS and IBEX measurements agree reasonably well (mean relative differences within +/- 15%) between 17 and 32 km. Statistical comparisons of the MIPAS profiles correlated with those of Odin/SMR, ILAS-II, and ACE-FTS generally show good consistency. The mean differences averaged over individual latitude bands or all bands are within the combined instrument errors, and generally within 1, 0.5, and 0.3 ppbv between 10 and 40 km (similar to 260 and 4.5 hPa) for Odin/SMR, ILAS-II, and ACE-FTS, respectively. The standard deviations of the differences are between 1 to 2 ppbv. The standard deviations for the satellite comparisons and for almost all other comparisons are generally larger than the estimated measurement uncertainty. This is associated with the temporal and spatial coincidence error and the horizontal smoothing error which are not taken into account in our error budget. Both errors become large when the spatial variability of the target molecule is high.Peer reviewe

A field assessment of the value of steady shape hydraulic tomography for characterization of aquifer heterogeneities

This is the published version. Copyright American Geophysical Union[1] Hydraulic tomography is a promising approach for obtaining information on variations in hydraulic conductivity on the scale of relevance for contaminant transport investigations. This approach involves performing a series of pumping tests in a format similar to tomography. We present a field-scale assessment of hydraulic tomography in a porous aquifer, with an emphasis on the steady shape analysis methodology. The hydraulic conductivity (K) estimates from steady shape and transient analyses of the tomographic data compare well with those from a tracer test and direct-push permeameter tests, providing a field validation of the method. Zonations based on equal-thickness layers and cross-hole radar surveys are used to regularize the inverse problem. The results indicate that the radar surveys provide some useful information regarding the geometry of the K field. The steady shape analysis provides results similar to the transient analysis at a fraction of the computational burden. This study clearly demonstrates the advantages of hydraulic tomography over conventional pumping tests, which provide only large-scale averages, and small-scale hydraulic tests (e.g., slug tests), which cannot assess strata connectivity and may fail to sample the most important pathways or barriers to flow