1,428 research outputs found

    Interconnect Challenges in Highly Integrated MEMS/ASIC Subsystems

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    Micromechanical devices like accelerometers or rotation sensors form an increasing segment beneath the devices supplying the consumer market. A hybrid integration approach to build smart sensor clusters for the precise detection of movements in all spatial dimensions requires a large toolbox of interconnect technologies, each with its own constraints regarding the total process integration. Specific challenges described in this paper are post-CMOS feedthroughs, front-to-front die contact arrays, vacuum-compliant lateral interconnect and fine-pitch solder balling to finally form a Chip-Scale System-in-Package (CSSiP).Comment: Submitted on behalf of EDA Publishing Association (http://irevues.inist.fr/EDA-Publishing

    Fructosediphosphatase of N. crassa

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    Fructosediphosphatase of N. crass

    An exact mathematical programming approach to multiple RNA sequence-structure alignment

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    One of the main tasks in computational biology is the computation of alignments of genomic sequences to reveal their commonalities. In case of DNA or protein sequences, sequence information alone is usually sufficient to compute reliable alignments. RNA molecules, however, build spatial conformations—the secondary structure—that are more conserved than the actual sequence. Hence, computing reliable alignments of RNA molecules has to take into account the secondary structure. We present a novel framework for the computation of exact multiple sequence-structure alignments: We give a graph- theoretic representation of the sequence-structure alignment problem and phrase it as an integer linear program. We identify a class of constraints that make the problem easier to solve and relax the original integer linear program in a Lagrangian manner. Experiments on a recently published benchmark show that our algorithms has a comparable performance than more costly dynamic programming algorithms, and outperforms all other approaches in terms of solution quality with an increasing number of input sequences

    Accurate multiple sequence-structure alignment of RNA sequences using combinatorial optimization

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    Background: The discovery of functional non-coding RNA sequences has led to an increasing interest in algorithms related to RNA analysis. Traditional sequence alignment algorithms, however, fail at computing reliable alignments of low-homology RNA sequences. The spatial conformation of RNA sequences largely determines their function, and therefore RNA alignment algorithms have to take structural information into account. Results: We present a graph-based representation for sequence-structure alignments, which we model as an integer linear program (ILP). We sketch how we compute an optimal or near-optimal solution to the ILP using methods from combinatorial optimization, and present results on a recently published benchmark set for RNA alignments. Conclusions: The implementation of our algorithm yields better alignments in terms of two published scores than the other programs that we tested: This is especially the case with an increasing number of inpu

    Antilope - A Lagrangian Relaxation Approach to the de novo Peptide Sequencing Problem

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    Peptide sequencing from mass spectrometry data is a key step in proteome research. Especially de novo sequencing, the identification of a peptide from its spectrum alone, is still a challenge even for state-of-the-art algorithmic approaches. In this paper we present Antilope, a new fast and flexible approach based on mathematical programming. It builds on the spectrum graph model and works with a variety of scoring schemes. Antilope combines Lagrangian relaxation for solving an integer linear programming formulation with an adaptation of Yen's k shortest paths algorithm. It shows a significant improvement in running time compared to mixed integer optimization and performs at the same speed like other state-of-the-art tools. We also implemented a generic probabilistic scoring scheme that can be trained automatically for a dataset of annotated spectra and is independent of the mass spectrometer type. Evaluations on benchmark data show that Antilope is competitive to the popular state-of-the-art programs PepNovo and NovoHMM both in terms of run time and accuracy. Furthermore, it offers increased flexibility in the number of considered ion types. Antilope will be freely available as part of the open source proteomics library OpenMS

    High Resolution Photoemission Study on Low-T_K Ce Systems: Kondo Resonance, Crystal Field Structures, and their Temperature Dependence

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    We present a high-resolution photoemission study on the strongly correlated Ce-compounds CeCu_6, CeCu_2Si_2, CeRu_2Si_2, CeNi_2Ge_2, and CeSi_2. Using a normalization procedure based on a division by the Fermi-Dirac distribution we get access to the spectral density of states up to an energy of 5 k_BT above the Fermi energy E_F. Thus we can resolve the Kondo resonance and the crystal field (CF) fine-structure for different temperatures above and around the Kondo temperature T_K. The CF peaks are identified with multiple Kondo resonances within the multiorbital Anderson impurity model. Our theoretical 4f spectra, calculated from an extended non-crossing approximation (NCA), describe consistently the observed photoemission features and their temperature dependence. By fitting the NCA spectra to the experimental data and extrapolating the former to low temperatures, T_K can be extracted quantitatively. The resulting values for T_K and the crystal field energies are in excellent agreement with the results from bulk sensitive measurements, e.g. inelastic neutron scattering.Comment: 16 two-column pages, 10 figure

    Local electronic structure of the peptide bond probed by resonant inelastic soft X-ray scattering.

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    The local valence orbital structure of solid glycine, diglycine, and triglycine is studied using soft X-ray emission spectroscopy (XES), resonant inelastic soft X-ray scattering (RIXS) maps, and spectra calculations based on density-functional theory. Using a building block approach, the contributions of the different functional groups of the peptides are separated. Cuts through the RIXS maps furthermore allow monitoring selective excitations of the amino and peptide functional units, leading to a modification of the currently established assignment of spectral contributions. The results thus paint a new-and-improved picture of the peptide bond, enhance the understanding of larger molecules with peptide bonds, and simplify the investigation of such molecules in aqueous environment

    Социально-философский анализ процессов модернизации в Китайской Народной Республике

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    Проанализированы основные изменения, произошедшие в обществе, в политической системе Китая в связи с началом реформ и модернизации после прихода к власти Дэн Сяопина. Дан анализ основных положений программы модернизации, предложенной руководством КНР. Освещены теоретико-методологические предпосылки модернизации КНР. Выделены основные мировоззренческие и методологические элементы теории социализма с китайской специфики
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