Uso de imagens TST do sensor MODIS/AQUA como indicativo da ocorrência de geadas no RS

Although frost occurrence causes severe losses in agriculture, especially in the south of Brazil, the data of minimum air temperature (Tmin) currently available for monitoring and predicting frosts show insufficient spatial distribution. This study aimed to evaluate the MDY11A1 (LST – Land Surface Temperature) product, from the MODIS sensor on board the AQUA satellite as an estimator of frost occurrence in the southeast of the state of Rio Grande do Sul, Brazil. LST images from the nighttime overpass of the MODIS/AQUA sensor for the months of June, July and August from 2006 to 2012, and data from three conventional weather stations of the National Institute of Meteorology (INMET) were used. Consistency was observed between Tmin data measured in weather stations and LST data obtained from the MODIS sensor. According to the results, LSTs below 3 ºC recorded by the MODIS/AQUA sensor are an indication of a favorable scenario to frost occurrence.Apesar da ocorrência de geadas causar severas perdas à agricultura, em especial no Sul do Brasil, os dados de temperatura mínima do ar atualmente disponíveis para o monitoramento e previsão deste fenômeno apresentam distribuição espacial insuficiente. O objetivo deste trabalho foi avaliar o produto MDY11A1 (TST - Temperatura da Superfície Terrestre), do sensor MODIS a bordo do satélite AQUA como estimador da ocorrência de geadas sobre o Sudeste do Estado do Rio Grande do Sul. Utilizaram-se imagens de TST da passagem noturna do sensor MODIS/AQUA dos meses de junho, julho e agosto de 2006 a 2012 e dados de três estações meteorológicas convencionais do INMET. Verificou-se coerência entre os dados de Temperatura mínima do ar medidos em estações meteorológicas e os dados de Temperatura da superfície da terra obtidos do sensor MODIS. Resultados desta pesquisa apontam que as TSTs registradas pelo sensor MODIS/AQUA inferiores a 3 °C são indicativas de situação favorável à ocorrência de geadas

Improved supervised learning-based approach for leaf and wood classification from LiDAR point clouds of forests

Accurately classifying 3-D point clouds into woody and leafy components has been an interest for applications in forestry and ecology including the better understanding of radiation transfer between canopy and atmosphere. The past decade has seen an increase in the methods attempting to classify leaves and wood in point clouds based on radiometric or geometric features. However, classification purely based on radiometric features is sensor-specific, and the method by which the local neighborhood of a point is defined affects the accuracy of classification based on geometric features. Here, we present a leaf-wood classification method combining geometrical features defined by radially bounded nearest neighbors at multiple spatial scales in a machine learning model. We compared the performance of three different machine learning models generated by the random forest (RF), XGBoost, and lightGBM algorithms. Using multiple spatial scales eliminates the need for an optimal neighborhood size selection and defining the local neighborhood by radially bounded nearest neighbors makes the method broadly applicable for point clouds of varying quality. We assessed the model performance at the individual tree- and plot-level on field data from tropical and deciduous forests, as well as on simulated point clouds. The method has an overall average accuracy of 94.2% on our data sets. For other data sets, the presented method outperformed the methods in literature in most cases without the need for additional postprocessing steps that are needed in most of the existing methods. We provide the entire framework as an open-source python package

Tree biomass equations from terrestrial LiDAR : a case study in Guyana

Large uncertainties in tree and forest carbon estimates weaken national efforts to accurately estimate aboveground biomass (AGB) for their national monitoring, measurement, reporting and verification system. Allometric equations to estimate biomass have improved, but remain limited. They rely on destructive sampling; large trees are under-represented in the data used to create them; and they cannot always be applied to different regions. These factors lead to uncertainties and systematic errors in biomass estimations. We developed allometric models to estimate tree AGB in Guyana. These models were based on tree attributes (diameter, height, crown diameter) obtained from terrestrial laser scanning (TLS) point clouds from 72 tropical trees and wood density. We validated our methods and models with data from 26 additional destructively harvested trees. We found that our best TLS-derived allometric models included crown diameter, provided more accurate AGB estimates (R-2 = 0.92-0.93) than traditional pantropical models (R-2 = 0.85-0.89), and were especially accurate for large trees (diameter > 70 cm). The assessed pantropical models underestimated AGB by 4 to 13%. Nevertheless, one pantropical model (Chave et al. 2005 without height) consistently performed best among the pantropical models tested (R-2 = 0.89) and predicted AGB accurately across all size classes-which but for this could not be known without destructive or TLS-derived validation data. Our methods also demonstrate that tree height is difficult to measure in situ, and the inclusion of height in allometric models consistently worsened AGB estimates. We determined that TLS-derived AGB estimates were unbiased. Our approach advances methods to be able to develop, test, and choose allometric models without the need to harvest trees

Leaf and wood classification framework for terrestrial LiDAR point clouds

Leaf and wood separation is a key step to allow a new range of estimates from Terrestrial LiDAR data, such as quantifying above-ground biomass, leaf and wood area and their 3D spatial distributions. We present a new method to separate leaf and wood from single tree point clouds automatically. Our approach combines unsupervised classification of geometric features and shortest path analysis. The automated separation algorithm and its intermediate steps are presented and validated. Validation consisted of using a testing framework with synthetic point clouds, simulated using ray-tracing and 3D tree models and 10 field scanned tree point clouds. To evaluate results we calculated accuracy, kappa coefficient and F-score. Validation using simulated data resulted in an overall accuracy of 0.83, ranging from 0.71 to 0.94. Per tree average accuracy from synthetic data ranged from 0.77 to 0.89. Field data results presented and overall average accuracy of 0.89. Analysis of each step showed accuracy ranging from 0.75 to 0.98. F-scores from both simulated and field data were similar, with scores from leaf usually higher than for wood. Our separation method showed results similar to others in literature, albeit from a completely automated workflow. Analysis of each separation step suggests that the addition of path analysis improved the robustness of our algorithm. Accuracy can be improved with per tree parameter optimization. The library containing our separation script can be easily installed and applied to single tree point cloud. Average processing times are below 10min for each tree

New insights into large tropical tree mass and structure from direct harvest and terrestrial lidar

A large portion of the terrestrial vegetation carbon stock is stored in the above-ground biomass (AGB) of tropical forests, but the exact amount remains uncertain, partly owing to the lack of measurements. To date, accessible peer-reviewed data are available for just 10 large tropical trees in the Amazon that have been harvested and directly measured entirely via weighing. Here, we harvested four large tropical rainforest trees (stem diameter: 0.6–1.2 m, height: 30–46 m, AGB: 3960–18 584 kg) in intact old-growth forest in East Amazonia, and measured above-ground green mass, moisture content and woody tissue density. We first present rare ecological insights provided by these data, including unsystematic intra-tree variations in density, with both height and radius. We also found the majority of AGB was usually found in the crown, but varied from 42 to 62%. We then compare non-destructive approaches for estimating the AGB of these trees, using both classical allometry and new lidar-based methods. Terrestrial lidar point clouds were collected pre-harvest, on which we fitted cylinders to model woody structure, enabling retrieval of volume-derived AGB. Estimates from this approach were more accurate than allometric counterparts (mean tree-scale relative error: 3% versus 15%), and error decreased when up-scaling to the cumulative AGB of the four trees (1% versus 15%). Furthermore, while allometric error increased fourfold with tree size over the diameter range, lidar error remained constant. This suggests error in these lidar-derived estimates is random and additive. Were these results transferable across forest scenes, terrestrial lidar methods would reduce uncertainty in stand-scale AGB estimates, and therefore advance our understanding of the role of tropical forests in the global carbon cycle

Correlations between spectral and biophysical data obtained in canola canopy cultivated in the subtropical region of Brazil

O objetivo deste trabalho foi a identificação das bandas espectrais, dos índices de vegetação e dos períodos do ciclo da canola em que a correlação entre os dados espectrais e os indicadores biofísicos (matéria seca total da parte aérea e rendimento de grãos) é mais significativa. Os experimentos foram conduzidos nas safras de 2013 e 2014, na Embrapa Trigo, no Estado do Rio Grande do Sul. Utilizou-se o delineamento experimental em blocos ao acaso, com quatro repetições, e os tratamentos foram cinco doses de nitrogênio em cobertura. Foram determinados a matéria seca das plantas, o rendimento de grãos e a fenologia. A resposta espectral da canola foi avaliada por medições de reflectância do dossel, com espectrorradiômetro, e, a partir desses dados, foram calculados os índices de vegetação SR, NDVI, EVI, SAVI e GNDVI. As correlações de Pearson entre as variáveis espectrais e biofísicas da canola mostraram que as melhores bandas para estimativa da matéria seca são as do vermelho (620 a 670 nm) e do infravermelho próximo (841 a 876 nm). O período vegetativo é o mais indicado para obtenção de correlações mais significativas para a canola. Todos os índices de vegetação utilizados são adequados para estimativas da matéria seca e do rendimento de grãos da canola.The objective of this work was to identify the spectral bands, vegetation indices, and periods of the canola crop season in which the correlation between spectral data and biophysical indicators (total shoot dry matter and grain yield) is most significant. The experiment was carried out during the 2013 and 2014 crop seasons at Embrapa Trigo, in the state of Rio Grande do Sul, Brazil. A randomized complete block design was used, with four replicates, and the treatments consisted of five doses of nitrogen topdressing. Plant dry matter, grain yield, and phenology were measured. The canola spectral response was evaluated by measuring the canola canopy reflectance using a spectroradiometer, and, with this data, the SR, NDVI, EVI, SAVI, and GNDVI vegetation indices were determined. Pearson’s correlations between the spectral and biophysical variables of canola showed that the red (620 to 670 nm) and near-infrared (841 to 876 nm) bands were the best to estimate the dry matter. The vegetative period is the most indicated to obtain the most significant correlations for canola. All the used vegetation indices are adequate for estimating the dry matter and grain yield of canola

Performance of Laser-Based Electronic Devices for Structural Analysis of Amazonian Terra-Firme Forests

Tropical vegetation biomass represents a key component of the carbon stored in global forest ecosystems. Estimates of aboveground biomass commonly rely on measurements of tree size (diameter and height) and then indirectly relate, via allometric relationships and wood density, to biomass sampled from a relatively small number of harvested and weighed trees. Recently, however, novel in situ remote sensing techniques have been proposed, which may provide nondestructive alternative approaches to derive biomass estimates. Nonetheless, we still lack knowledge of the measurement uncertainties, as both the calibration and validation of estimates using different techniques and instruments requires consistent assessment of the underlying errors. To that end, we investigate different approaches estimating the tropical aboveground biomass in situ. We quantify the total and systematic errors among measurements obtained from terrestrial light detection and ranging (LiDAR), hypsometer-based trigonometry, and traditional forest inventory. We show that laser-based estimates of aboveground biomass are in good agreement (<10% measurement uncertainty) with traditional measurements. However, relative uncertainties vary among the allometric equations based on the vegetation parameters used for parameterization. We report the error metrics for measurements of tree diameter and tree height and discuss the consequences for estimated biomass. Despite methodological differences detected in this study, we conclude that laser-based electronic devices could complement conventional measurement techniques, thereby potentially improving estimates of tropical vegetation biomass