142 research outputs found
STM characterization of the Si-P heterodimer
We use scanning tunneling microscopy (STM) and Auger electron spectroscopy to
study the behavior of adsorbed phosphine (PH) on Si(001), as a function
of annealing temperature, paying particular attention to the formation of the
Si-P heterodimer. Dosing the Si(001) surface with 0.002 Langmuirs of
PH results in the adsorption of PH (x=2,3) onto the surface and
some etching of Si to form individual Si ad-dimers. Annealing to 350C
results in the incorporation of P into the surface layer to form Si-P
heterodimers and the formation of short 1-dimensional Si dimer chains and
monohydrides. In filled state STM images, isolated Si-P heterodimers appear as
zig-zag features on the surface due to the static dimer buckling induced by the
heterodimer. In the presence of a moderate coverage of monohydrides this static
buckling is lifted, rending the Si-P heterodimers invisible in filled state
images. However, we find that we can image the heterodimer at all H coverages
using empty state imaging. The ability to identify single P atoms incorporated
into Si(001) will be invaluable in the development of nanoscale electronic
devices based on controlled atomic-scale doping of Si.Comment: 6 pages, 4 figures (only 72dpi
Direct observation by resonant tunneling of the B^+ level in a delta-doped silicon barrier
We observe a resonance in the conductance of silicon tunneling devices with a
delta-doped barrier. The position of the resonance indicates that it arises
from tunneling through the B^+ state of the boron atoms of the delta-layer.
Since the emitter Fermi level in our devices is a field-independent reference
energy, we are able to directly observe the diamagnetic shift of the B^+ level.
This is contrary to the situation in magneto-optical spectroscopy, where the
shift is absorbed in the measured ionization energy.Comment: submitted to PR
Split-off dimer defects on the Si(001)2x1 surface
Dimer vacancy (DV) defect complexes in the Si(001)2x1 surface were
investigated using high-resolution scanning tunneling microscopy and first
principles calculations. We find that under low bias filled-state tunneling
conditions, isolated 'split-off' dimers in these defect complexes are imaged as
pairs of protrusions while the surrounding Si surface dimers appear as the
usual 'bean-shaped' protrusions. We attribute this to the formation of pi-bonds
between the two atoms of the split-off dimer and second layer atoms, and
present charge density plots to support this assignment. We observe a local
brightness enhancement due to strain for different DV complexes and provide the
first experimental confirmation of an earlier prediction that the 1+2-DV
induces less surface strain than other DV complexes. Finally, we present a
previously unreported triangular shaped split-off dimer defect complex that
exists at SB-type step edges, and propose a structure for this defect involving
a bound Si monomer.Comment: 8 pages, 7 figures, submitted to Phys. Rev.
An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics
For a decade, The Cancer Genome Atlas (TCGA) program collected clinicopathologic annotation data along with multi-platform molecular profiles of more than 11,000 human tumors across 33 different cancer types. TCGA clinical data contain key features representing the democratized nature of the data collection process. To ensure proper use of this large clinical dataset associated with genomic features, we developed a standardized dataset named the TCGA Pan-Cancer Clinical Data Resource (TCGA-CDR), which includes four major clinical outcome endpoints. In addition to detailing major challenges and statistical limitations encountered during the effort of integrating the acquired clinical data, we present a summary that includes endpoint usage recommendations for each cancer type. These TCGA-CDR findings appear to be consistent with cancer genomics studies independent of the TCGA effort and provide opportunities for investigating cancer biology using clinical correlates at an unprecedented scale. Analysis of clinicopathologic annotations for over 11,000 cancer patients in the TCGA program leads to the generation of TCGA Clinical Data Resource, which provides recommendations of clinical outcome endpoint usage for 33 cancer types
The first Hubble diagram and cosmological constraints using superluminous supernovae
This paper has gone through internal review by the DES collaboration.
It has Fermilab preprint number 19-115-AE and DES
publication number 13387. We acknowledge support from EU/FP7-
ERC grant 615929. RCN would like to acknowledge support from
STFC grant ST/N000688/1 and the Faculty of Technology at the
University of Portsmouth. LG was funded by the European Union’s
Horizon 2020 Framework Programme under the Marie Skłodowska-
Curie grant agreement no. 839090. This work has been partially
supported by the Spanish grant PGC2018-095317-B-C21 within
the European Funds for Regional Development (FEDER). Funding
for the DES Projects has been provided by the U.S. Department
of Energy, the U.S. National Science Foundation, the Ministry
of Science and Education of Spain, the Science and Technology
Facilities Council of the United Kingdom, the Higher Education
Funding Council for England, the National Center for Supercomputing
Applications at the University of Illinois at Urbana-Champaign,
the Kavli Institute of Cosmological Physics at the University of
Chicago, the Center for Cosmology and Astro-Particle Physics at
the Ohio State University, the Mitchell Institute for Fundamental
Physics and Astronomy at Texas A&M University, Financiadora
de Estudos e Projetos, Fundac¸ ˜ao Carlos Chagas Filho de Amparo
`a Pesquisa do Estado do Rio de Janeiro, Conselho Nacional de
Desenvolvimento Cient´ıfico e Tecnol´ogico and the Minist´erio da
Ciˆencia, Tecnologia e Inovac¸ ˜ao, the Deutsche Forschungsgemeinschaft,
and the Collaborating Institutions in the Dark Energy Survey.
The Collaborating Institutions are Argonne National Laboratory, the
University of California at Santa Cruz, the University of Cambridge,
Centro de Investigaciones Energ´eticas, Medioambientales y Tecnol
´ogicas-Madrid, the University of Chicago, University College
London, the DES-Brazil Consortium, the University of Edinburgh,
the Eidgen¨ossische Technische Hochschule (ETH) Z¨urich, Fermi
NationalAccelerator Laboratory, theUniversity of Illinois atUrbana-
Champaign, the Institut de Ci`encies de l’Espai (IEEC/CSIC), the
Institut de F´ısica d’Altes Energies, Lawrence Berkeley National
Laboratory, the Ludwig-Maximilians Universit¨at M¨unchen and the
associated Excellence Cluster Universe, the University of Michigan,
the National Optical Astronomy Observatory, the University of
Nottingham, The Ohio State University, the University of Pennsylvania,
the University of Portsmouth, SLAC National Accelerator
Laboratory, Stanford University, the University of Sussex, Texas
A&M University, and the OzDES Membership Consortium. Based
in part on observations at Cerro Tololo Inter-American Observatory,
National Optical Astronomy Observatory, which is operated by the
Association of Universities for Research in Astronomy (AURA) under a cooperative agreement with the National Science Foundation.
The DES data management system is supported by the
National Science Foundation under grant numbers AST-1138766
and AST-1536171. The DES participants from Spanish institutions
are partially supported by MINECO under grants AYA2015-
71825, ESP2015-66861, FPA2015-68048, SEV-2016-0588, SEV-
2016-0597, and MDM-2015-0509, some of which include ERDF
funds from the European Union. IFAE is partially funded by the
CERCA program of the Generalitat de Catalunya. Research leading
to these results has received funding from the European Research
Council under the European Union Seventh Framework Programme
(FP7/2007-2013) including ERC grant agreements 240672, 291329,
and 306478.We acknowledge support from the Australian Research
Council Centre of Excellence for All-skyAstrophysics (CAASTRO),
through project number CE110001020, and the Brazilian Instituto
Nacional de Ciˆencia e Tecnologia (INCT) e-Universe (CNPq grant
465376/2014-2).
This paper has been authored by Fermi Research Alliance, LLC
under Contract No.DE-AC02-07CH11359 with theU.S.Department
of Energy, Office of Science, Office of High Energy Physics. The
United States Government retains and the publisher, by accepting
the paper for publication, acknowledges that the United States
Government retains a non-exclusive, paid-up, irrevocable, worldwide
license to publish or reproduce the published form of this paper,
or allow others to do so, for United States Government purposes.We present the first Hubble diagram of superluminous supernovae (SLSNe) out to a redshift of two, together with constraints
on the matter density, M, and the dark energy equation-of-state parameter, w(≡p/ρ). We build a sample of 20 cosmologically
useful SLSNe I based on light curve and spectroscopy quality cuts. We confirm the robustness of the peak–decline SLSN I
standardization relation with a larger data set and improved fitting techniques than previous works. We then solve the SLSN
model based on the above standardization via minimization of the χ2 computed from a covariance matrix that includes statistical
and systematic uncertainties. For a spatially flat cold dark matter ( CDM) cosmological model, we find M = 0.38+0.24
−0.19,
with an rms of 0.27 mag for the residuals of the distance moduli. For a w0waCDM cosmological model, the addition of SLSNe I
to a ‘baseline’ measurement consisting of Planck temperature together with Type Ia supernovae, results in a small improvement
in the constraints of w0 and wa of 4 per cent.We present simulations of future surveys with 868 and 492 SLSNe I (depending on
the configuration used) and show that such a sample can deliver cosmological constraints in a flat CDM model with the same
precision (considering only statistical uncertainties) as current surveys that use Type Ia supernovae, while providing a factor of
2–3 improvement in the precision of the constraints on the time variation of dark energy, w0 and wa. This paper represents the
proof of concept for superluminous supernova cosmology, and demonstrates they can provide an independent test of cosmology
in the high-redshift (z > 1) universe.EU/FP7-ERC grant 615929STFC grant ST/N000688/1Faculty of Technology at the
University of PortsmouthEuropean Union’s
Horizon 2020 Framework Programme under the Marie Skłodowska-
Curie grant agreement no. 839090Spanish grant PGC2018-095317-B-C21 within
the European Funds for Regional Development (FEDER)U.S. Department
of EnergyU.S. National Science FoundationMinistry
of Science and Education of SpainScience and Technology
Facilities Council of the United KingdomHigher Education
Funding Council for EnglandNational Center for Supercomputing
Applications at the University of Illinois at Urbana-Champaign,Kavli Institute of Cosmological Physics at the University of
ChicagoCenter for Cosmology and Astro-Particle Physics at
the Ohio State UniversityMitchell Institute for Fundamental
Physics and Astronomy at Texas A&M University, Financiadora
de Estudos e Projetos, Fundacão Carlos Chagas Filho de Amparo
`a Pesquisa do Estado do Rio de Janeiro, Conselho Nacional de
Desenvolvimento Científico e Tecnológico and the Ministério da
Ciencia, Tecnologia e InovacãoDeutsche ForschungsgemeinschaftCollaborating Institutions in the Dark Energy Survey.National Science Foundation under grant numbers AST-1138766
and AST-1536171.T MINECO under grants AYA2015-
71825, ESP2015-66861, FPA2015-68048, SEV-2016-0588, SEV-
2016-0597, and MDM-2015-0509, some of which include ERDF
funds from the European Union.CERCA program of the Generalitat de Catalunya.European Research
Council under the European Union Seventh Framework Programme
(FP7/2007-2013) including ERC grant agreements 240672, 291329,
and 306478.Australian Research
Council Centre of Excellence for All-skyAstrophysics (CAASTRO),
through project number CE110001020Brazilian Instituto
Nacional de Ciˆencia e Tecnologia (INCT) e-Universe (CNPq grant
465376/2014-2)Fermi Research Alliance, LLC
under Contract No.DE-AC02-07CH11359 with theU.S.Department
of Energy, Office of Science, Office of High Energy Physic
First cosmology results using SNe Ia from the dark energy survey: analysis, systematic uncertainties, and validation
International audienceWe present the analysis underpinning the measurement of cosmological parameters from 207 spectroscopically classified type Ia supernovae (SNe Ia) from the first three years of the Dark Energy Survey Supernova Program (DES-SN), spanning a redshift range of 0.01
First cosmology results using type Ia supernovae from the Dark Energy Survey: constraints on cosmological parameters
We present the first cosmological parameter constraints using measurements of type Ia supernovae (SNe Ia) from the Dark Energy Survey Supernova Program (DES-SN). The analysis uses a subsample of 207 spectroscopically confirmed SNe Ia from the first three years of DES-SN, combined with a low-redshift sample of 122 SNe from the literature. Our "DES-SN3YR" result from these 329 SNe Ia is based on a series of companion analyses and improvements covering SN Ia discovery, spectroscopic selection, photometry, calibration, distance bias corrections, and evaluation of systematic uncertainties. For a flat LCDM model we find a matter density Omega_m = 0.331 +_ 0.038. For a flat wCDM model, and combining our SN Ia constraints with those from the cosmic microwave background (CMB), we find a dark energy equation of state w = -0.978 +_ 0.059, and Omega_m = 0.321 +_ 0.018. For a flat w0waCDM model, and combining probes from SN Ia, CMB and baryon acoustic oscillations, we find w0 = -0.885 +_ 0.114 and wa = -0.387 +_ 0.430. These results are in agreement with a cosmological constant and with previous constraints using SNe Ia (Pantheon, JLA)
Driver Fusions and Their Implications in the Development and Treatment of Human Cancers.
Gene fusions represent an important class of somatic alterations in cancer. We systematically investigated fusions in 9,624 tumors across 33 cancer types using multiple fusion calling tools. We identified a total of 25,664 fusions, with a 63% validation rate. Integration of gene expression, copy number, and fusion annotation data revealed that fusions involving oncogenes tend to exhibit increased expression, whereas fusions involving tumor suppressors have the opposite effect. For fusions involving kinases, we found 1,275 with an intact kinase domain, the proportion of which varied significantly across cancer types. Our study suggests that fusions drive the development of 16.5% of cancer cases and function as the sole driver in more than 1% of them. Finally, we identified druggable fusions involving genes such as TMPRSS2, RET, FGFR3, ALK, and ESR1 in 6.0% of cases, and we predicted immunogenic peptides, suggesting that fusions may provide leads for targeted drug and immune therapy
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