EARLY STAGES OF LIGNITE FORMATION IN PTOLEMAIS BASIN: A COAL-PETROGRAPHIC APPROACH

With the present study it is intended to assess the depositional palaeoenvironment of the lower part of the Lignite-bearing Sequence in the Ptolemais Basin, and more specifically in the areas of Notio-Field and Tomeas-6 open pits. The sediments under study represent the seam between the Volcanic Tephra Layer and the Basal Marl, which constitute the roof and the floor, respectively. Coal-petrographic results showed that Huminite is the main macerai group (84-96%), while macérais from Liptinite and Inertinite groups display low values (<10%). In bulk lignite samples the main mineral phases are quartz, calcite, clay minerals and feldspars, while in the ashes the main phases are quartz, anhydrite and lime. The palaeoenvironment of the lignite formation was reconstructed using the lithological, coalpetrographic and mineralogical data, as well as coal-facies diagrammes. In Notio-Field Mine, at the early stages of lignite formation the conditions used to be limnotelmatic, while in Tomeas-6 Mine they were telmatic. Upwards the conditions turned to more telmatic in both mine areas. The vegetation was mainly herbaceous with some arboreal elements occurring mostly in Tomeas-6 area. The water influx was generally intense resulting in enhanced inorganic inpu

Staphylococcus aureus forms spreading dendrites that have characteristics of active motility

Staphylococcus aureus is historically regarded as a non-motile organism. More recently it has been shown that S. aureus can passively move across agar surfaces in a process called spreading. We re-analysed spreading motility using a modified assay and fo- cused on observing the formation of dendrites: branching structures that emerge from the central colony. We discovered that S. aureus can spread across the surface of media in struc- tures that we term ‘comets’, which advance outwards and precede the formation of dendrites. We observed comets in a diverse selection of S. aureus isolates and they exhibit the following behaviours: (1) They consist of phenotypically distinct cores of cells that move forward and seed other S. aureus cells behind them forming a comet ‘tail’; (2) they move when other cells in the comet tail have stopped moving; (3) the comet core is held together by a matrix of slime; and (4) the comets etch trails in the agar as they move forwards. Comets are not con- sistent with spreading motility or other forms of passive motility. Comet behaviour does share many similarities with a form of active motility known as gliding. Our observations therefore suggest that S. aureus is actively motile under certain conditions

EARLY STAGES OF LIGNITE FORMATION IN PTOLEMAIS BASIN: A COAL-PETROGRAPHIC APPROACH

With the present study it is intended to assess the depositional palaeoenvironment of the lower part of the Lignite-bearing Sequence in the Ptolemais Basin, and more specifically in the areas of Notio-Field and Tomeas-6 open pits. The sediments under study represent the seam between the Volcanic Tephra Layer and the Basal Marl, which constitute the roof and the floor, respectively. Coal-petrographic results showed that Huminite is the main macerai group (84-96%), while macérais from Liptinite and Inertinite groups display low values (&lt;10%). In bulk lignite samples the main mineral phases are quartz, calcite, clay minerals and feldspars, while in the ashes the main phases are quartz, anhydrite and lime. The palaeoenvironment of the lignite formation was reconstructed using the lithological, coalpetrographic and mineralogical data, as well as coal-facies diagrammes. In Notio-Field Mine, at the early stages of lignite formation the conditions used to be limnotelmatic, while in Tomeas-6 Mine they were telmatic. Upwards the conditions turned to more telmatic in both mine areas. The vegetation was mainly herbaceous with some arboreal elements occurring mostly in Tomeas-6 area. The water influx was generally intense resulting in enhanced inorganic inpu

Defining motility in the Staphylococci

The ability of bacteria to move is critical for their survival in diverse environments and multiple ways have evolved to achieve this. Two forms of motility have recently been described for Staphylococcus aureus, an organism previously considered to be non-motile. One form is called spreading, which is a type of sliding motility and the second form involves comet formation, which has many observable characteristics associated with gliding motility. Darting motility has also been observed in Staphylococcus epidermidis. This review describes how motility is defined and how we distinguish between passive and active motility. We discuss the characteristics of the various forms of Staphylococci motility, the molecular mechanisms involved and the potential future research directions

Distribution, organization and expression of genes concerned with anaerobic lactate utilization in human intestinal bacteria

Lactate accumulation in the human gut is linked to a range of deleterious health impacts. However, lactate is consumed and converted to the beneficial short-chain fatty acids butyrate and propionate by indigenous lactate-utilizing bacteria. To better understand the underlying genetic basis for lactate utilization, transcriptomic analyses were performed for two prominent lactate-utilizing species from the human gut, Anaerobutyricum soehngenii and Coprococcus catus , during growth on lactate, hexose sugar or hexose plus lactate. In A. soehngenii L2-7 six genes of the lactate utilization (lct) cluster, including NAD-independent d-lactate dehydrogenase (d-iLDH), were co-ordinately upregulated during growth on equimolar d- and l-lactate (dl-lactate). Upregulated genes included an acyl-CoA dehydrogenase related to butyryl-CoA dehydrogenase, which may play a role in transferring reducing equivalents between reduction of crotonyl-CoA and oxidation of lactate. Genes upregulated in C. catus GD/7 included a six-gene cluster (lap) encoding propionyl CoA-transferase, a putative lactoyl-CoA epimerase, lactoyl-CoA dehydratase and lactate permease, and two unlinked acyl-CoA dehydrogenase genes that are candidates for acryloyl-CoA reductase. A d-iLDH homologue in C. catus is encoded by a separate, partial lct, gene cluster, but not upregulated on lactate. While C. catus converts three mols of dl-lactate via the acrylate pathway to two mols propionate and one mol acetate, some of the acetate can be re-used with additional lactate to produce butyrate. A key regulatory difference is that while glucose partially repressed lct cluster expression in A. soehngenii , there was no repression of lactate-utilization genes by fructose in the non-glucose utilizer C. catus . This suggests that these species could occupy different ecological niches for lactate utilization in the gut, which may be important factors to consider when developing lactate-utilizing bacteria as novel candidate probiotics

A convenient and versatile culturomics platform to expand the human gut culturome of Lachnospiraceae and Oscillospiraceae

Acknowledgements N.P. was supported by a grant from the Graduate School of Medical Sciences of the University of Groningen, the Netherlands. L.L. was supported by a joint fellowship from the University Medical Center Groningen and the China Scholarship Council (CSC) (grant number CSC201908320432). A.W.W. and the Rowett Institute receive core funding support from the Scottish Government’s Rural and Environmental Science and Analytical Services (RESAS) division. The funders played no role in study design, data collection, analysis and interpretation of data, or the writing of this manuscript.Peer reviewe

The action of selected isothiocyanates on bacterial biofilm prevention and control

The activity of two selected isothiocyanates (ITCs), allylisothiocyanate (AITC) and 2-phenylethy-lisothiocyanate (PEITC) was evaluated on the prevention and control of biofilms formed by Escherichia coli, Pseudomonas aeruginosa, Staphylococcus aureus and Listeria monocytogenes. In addition, the effect of ITCs was also tested on planktonic cell susceptibility, bacterial motility and adhesion. Biofilm prevention and control were tested using a microtiter plate assay and the effect of ITCs was assessed on biofilm mass and metabolic activity. The minimum bactericidal concentration for E. coli and P. aeruginosa was 1000 μg mL−1 (AITC) and >1000 μg mL−1 (PEITC), for S. aureus and L. monocytogenes was >1000 μg mL−1 (for both ITCs). AITC caused total inhibition of swimming (P. aeruginosa) and swarming (E. coli) motilities. PEITC caused total inhibition of swimming (E. coli, P. aeruginosa and L. monocytogenes) and swarming (E. coli and P. aeruginosa) motilities. Colony spreading of S. aureus was completely inhibited with PEITC. Adhesion assessed in terms of free energy was less favorable when bacteria were exposed to AITC for E. coli and P. aeruginosa and PEITC for P. aeruginosa. Both ITCs had preventive action on biofilm formation and showed a higher potential to reduce the mass of biofilms formed by the Gram-negative bacteria. AITC and PEITC promoted reductions in biofilm activity higher than 60% for all the biofilms tested. The overall study emphasizes the potential of ITCs as emergent products to inhibit bacterial motility and prevent/control biofilms of important human pathogenic bacteria.This work was supported by Operational Programme for Competitiveness Factors - COMPETE and by FCT - Portuguese Foundation for Science and Technology through Projects Bioresist - PTDC/EBB-EBI/105085/2008; Phytodisinfectants - PTDC/DTP-SAP/1078/2012 and the PhD grant awarded to Anabela Borges (SFRH/BD/63398/2009)