Finishing the euchromatic sequence of the human genome

The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead

Use of provisioning ecosystem services drives loss of functional traits across land use intensification gradients in tropical forests in Madagascar

Ecosystems services are threatened by the rapid degradation of tropical rainforests. In light of these threats, questions remain about how societies on the forest fringe who depend on provisioning services affect plant functional traits. This study assessed the relationship between plant functional traits, forest-dependent societies and provisioning ecosystem services along a forest–agriculture matrix gradient in tropical humid forests of Madagascar. Data were collected for six functional traits and six provisioning services. We evaluated functional diversity (FD) and utilitarian diversity (FD of provisioning services) along disturbance gradients. We also determined the traits most susceptible to loss along the gradient as well as the relationship between functional traits and provisioning services. The results showed that FD, utilitarian diversity and species richness decreased significantly across all modified habitats. There was a distinct suite of traits absent from intensely used habitats and those same traits were associated with the two most important provisioning services in the region (firewood and construction). The activities of people living on the forest fringe seem to be a strong selective force on trait loss in plant communities, which in turn will influence future species assembly and trait diversity and distribution. Moreover, this study suggests that it is possible to predict trait loss from plant communities in forests where degradation is mediated primarily through subsistence agriculture and resource extraction. Conservation efforts should recognize that forest degradation and deforestation are contextually specific, determined mostly by people’s efforts to maintain their basic livelihood, and therefore necessitate local-scale interventions that feed into landscape-scale policy initiatives