150 research outputs found

    Seismic Data Interpolation based on Denoising Diffusion Implicit Models with Resampling

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    The incompleteness of the seismic data caused by missing traces along the spatial extension is a common issue in seismic acquisition due to the existence of obstacles and economic constraints, which severely impairs the imaging quality of subsurface geological structures. Recently, deep learning-based seismic interpolation methods have attained promising progress, while achieving stable training of generative adversarial networks is not easy, and performance degradation is usually notable if the missing patterns in the testing and training do not match. In this paper, we propose a novel seismic denoising diffusion implicit model with resampling. The model training is established on the denoising diffusion probabilistic model, where U-Net is equipped with the multi-head self-attention to match the noise in each step. The cosine noise schedule, serving as the global noise configuration, promotes the high utilization of known trace information by accelerating the passage of the excessive noise stages. The model inference utilizes the denoising diffusion implicit model, conditioning on the known traces, to enable high-quality interpolation with fewer diffusion steps. To enhance the coherency between the known traces and the missing traces within each reverse step, the inference process integrates a resampling strategy to achieve an information recap on the former interpolated traces. Extensive experiments conducted on synthetic and field seismic data validate the superiority of our model and its robustness on various missing patterns. In addition, uncertainty quantification and ablation studies are also investigated.Comment: 14 pages, 13 figure

    A Dual-Bacterial Coupled Fermentation Strategy for Nicotinamide Mononucleotide Synthesis

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    In this study, a dual-bacterial coupled fermentation system containing nicotinamide nucleoside kinase (NRK) and polyphosphatase (PPK) was constructed, and the application of PPK-based ATP regeneration system in NMN production was achieved. First, engineering strains expressing NRK1 and NRK2 were constructed, and the highly active Escherichia coli BL21 (DE3)-pET28a-NRK1 was selected, with NMN yield and productivity of 5.17 g/L and 77.4%, respectively. Then, the induced expression conditions of NRK1 were optimized, and a low temperature of 16 ℃, an isopropyl-β-D-thiogalactopyranoside (IPTG) concentration of 0.7 mmol/L, an inoculation amount of 3% and an induction duration of 22 h were found to be optimal the soluble expression of NRK1 protein. The optimal synthesis conditions of NMN by E. coli BL21 (DE3)-pET28a-NRK1 were explored. It was found that after 12 h culture at 18 ℃ at an initial cell concentration of 100 g/L and a ratio of ATP to NR of 1:1.5, the highest yield of NMN of 5.73 g/L was obtained with a productivity of 85.78%. Finally, the optimal conditions that provided maximal NMN production (11.81 g/L) by coupled fermentation with E. coli BL21 (DE3) pET28a-PPK and E. coli BL21 (DE3)-pET28a-NRK1 were determined as 1:3.5, 1:2 and 16 h for ATP to NR ratio, initial cell concentration and fermentation time, respectively. The high-density dual-bacterial coupled fermentation strategy established in this study opens up a new pathway for high-efficiency, low-cost and large-scale production of NMN

    STIDNet: Identity-Aware Face Forgery Detection with Spatiotemporal Knowledge Distillation

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    The impressive development of facial manipulation techniques has raised severe public concerns. Identity-aware methods, especially suitable for protecting celebrities, are seen as one of promising face forgery detection approaches with additional reference video. However, without in-depth observation of fake video’s characteristics, most existing identity-aware algorithms are just naive imitation of face verification model and fail to exploit discriminative information. In this article, we argue that it is necessary to take both spatial and temporal perspectives into consideration for adequate inconsistency clues and propose a novel forgery detector named SpatioTemporal IDentity network (STIDNet). To effectively capture heterogeneous spatiotemporal information in a unified formulation, our STIDNet is following a knowledge distillation architecture that the student identity extractor receives supervision from a spatial information encoder (SIE) and a temporal information encoder (TIE) through multiteacher training. Specifically, a regional sensitive identity modelling paradigm is proposed in SIE by introducing facial blending augmentation but with uniform identity label, thus encourage model to focus on spatial discriminative region like outer face. Meanwhile, considering the strong temporal correlation between audio and talking face video, our TIE is devised in a cross-modal pattern that the audio information is introduced to supervise model exploiting temporal personalized movements. Benefit from knowledge transfer from SIE and TIE, STIDNet is able to capture individual’s essential spatiotemporal identity attributes and sensitive to even subtle identity deviation caused by manipulation. Extensive experiments indicate the superiority of our STIDNet compared with previous works. Moreover, we also demonstrate STIDNet is more suitable for real-world implementation in terms of model complexity and reference set size

    Heteroaggregation of nanoparticles with biocolloids and geocolloids

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    The application of nanoparticles has raised concern over the safety of these materials to human health and the ecosystem. After release into an aquatic environment, nanoparticles are likely to experience heteroaggregation with biocolloids, geocolloids, natural organic matter (NOM) and other types of nanoparticles. Heteroaggregation is of vital importance for determining the fate and transport of nanoparticles in aqueous phase and sediments. In this article, we review the typical cases of heteroaggregation between nanoparticles and biocolloids and/or geocolloids, mechanisms, modeling, and important indicators used to determine heteroaggregation in aqueous phase. The major mechanisms of heteroaggregation include electric force, bridging, hydrogen bonding, and chemical bonding. The modeling of heteroaggregation typically considers DLVO, X-DLVO, and fractal dimension. The major indicators for studying heteroaggregation of nanoparticles include surface charge measurements, size measurements, observation of morphology of particles and aggregates, and heteroaggregation rate determination. In the end, we summarize the research challenges and perspective for the heteroaggregation of nanoparticles, such as the determination of αhetero values and heteroaggregation rates; more accurate analytical methods instead of DLS for heteroaggregation measurements; sensitive analytical techniques to measure low concentrations of nanoparticles in heteroaggregation systems; appropriate characterization of NOM at the molecular level to understand the structures and fractionation of NOM; effects of different types, concentrations, and fractions of NOM on the heteroaggregation of nanoparticles; the quantitative adsorption and desorption of NOM onto the surface of nanoparticles and heteroaggregates; and a better understanding of the fundamental mechanisms and modeling of heteroaggregation in natural water which is a complex system containing NOM, nanoparticles, biocolloids and geocolloids

    31st Annual Meeting and Associated Programs of the Society for Immunotherapy of Cancer (SITC 2016) : part two

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    Background The immunological escape of tumors represents one of the main ob- stacles to the treatment of malignancies. The blockade of PD-1 or CTLA-4 receptors represented a milestone in the history of immunotherapy. However, immune checkpoint inhibitors seem to be effective in specific cohorts of patients. It has been proposed that their efficacy relies on the presence of an immunological response. Thus, we hypothesized that disruption of the PD-L1/PD-1 axis would synergize with our oncolytic vaccine platform PeptiCRAd. Methods We used murine B16OVA in vivo tumor models and flow cytometry analysis to investigate the immunological background. Results First, we found that high-burden B16OVA tumors were refractory to combination immunotherapy. However, with a more aggressive schedule, tumors with a lower burden were more susceptible to the combination of PeptiCRAd and PD-L1 blockade. The therapy signifi- cantly increased the median survival of mice (Fig. 7). Interestingly, the reduced growth of contralaterally injected B16F10 cells sug- gested the presence of a long lasting immunological memory also against non-targeted antigens. Concerning the functional state of tumor infiltrating lymphocytes (TILs), we found that all the immune therapies would enhance the percentage of activated (PD-1pos TIM- 3neg) T lymphocytes and reduce the amount of exhausted (PD-1pos TIM-3pos) cells compared to placebo. As expected, we found that PeptiCRAd monotherapy could increase the number of antigen spe- cific CD8+ T cells compared to other treatments. However, only the combination with PD-L1 blockade could significantly increase the ra- tio between activated and exhausted pentamer positive cells (p= 0.0058), suggesting that by disrupting the PD-1/PD-L1 axis we could decrease the amount of dysfunctional antigen specific T cells. We ob- served that the anatomical location deeply influenced the state of CD4+ and CD8+ T lymphocytes. In fact, TIM-3 expression was in- creased by 2 fold on TILs compared to splenic and lymphoid T cells. In the CD8+ compartment, the expression of PD-1 on the surface seemed to be restricted to the tumor micro-environment, while CD4 + T cells had a high expression of PD-1 also in lymphoid organs. Interestingly, we found that the levels of PD-1 were significantly higher on CD8+ T cells than on CD4+ T cells into the tumor micro- environment (p < 0.0001). Conclusions In conclusion, we demonstrated that the efficacy of immune check- point inhibitors might be strongly enhanced by their combination with cancer vaccines. PeptiCRAd was able to increase the number of antigen-specific T cells and PD-L1 blockade prevented their exhaus- tion, resulting in long-lasting immunological memory and increased median survival
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