Juvenile Dungeness crab foraging behavior and lipid composition is altered more by food quantity than seawater pH in a multi-stressor experiment

Increases in atmospheric, anthropogenic carbon are driving reductions in seawater pH, a process referred to as ocean acidification. Reduced seawater pH can influence behavior of marine animals, but little is currently known about how juvenile crustaceans will respond. We conducted lab experiments to improve our understanding of the consequences of pH exposure and food quantity on juvenile Dungeness crab (Metacarcinus magister, (Dana, 1852)) behavior and nutritional condition. To understand the foraging and pH sensing behavior of juvenile crab, and how this interacts with their nutritional status, we exposed recently settled second instar juveniles to either ambient pH or reduced pH for 42-d, crossed with either a ‘maintenance’- or low-quantity ‘challenge’ diet treatment. After the experimental exposure period, we introduced crab into foraging and sensing pH behavior experiments. In the foraging experiment, we placed crab in a behavior arena with unidirectional flow, where we measured the food discovery time and time allocation of activities in 300-s trials for all individual crab. Food quantity and pH exposure influenced both the speed with which juvenile crab identified and allocation of activities but there was no interactive effect of experimental factors. For our pH sensing experiment, we used a two-current flume plumbed with both ambient and reduced pH seawater. This flow-through flume provided a choice between the pH treatment waters and allowed us to measure the amount of time individuals spent on either side of the arena in 300-s trials. There was no effect of prior diet or pH exposure on the amount of time juvenile crab spent in either seawater pH condition. In addition to the behavior trials, we evaluated crab nutritional condition by quantifying the total lipid content of whole-body tissues and fatty acid profile composition of juvenile crab fed either the maintenance or low-quantity diet during the experimental pH exposure period. The proportional fatty acid profiles differed for crab based on their diet and pH exposure, with no interactive effects. However, we did not detect differences in the concentrations of key summary categories of fatty acids (e.g., saturated, monounsaturated, or polyunsaturated) based on pH exposure. Our results indicate that reduced food availability has a greater impact on juvenile Dungeness crab foraging behavior and nutritional condition than reduced seawater pH exposure representing the 0.3 pH unit decrease predicted by 2100.National Oceanic and Atmospheric Administration's National Sea Grant College Program. National Science Foundation. US Department of Commerce. Oregon State Legislature. M. J. Murdock Trust Partners-in-Science.Highlights -- Abstract -- Keywords -- 1. Introduction -- 2. Materials and methods -- 3. Results -- 4. Discussion -- CRediT authorship contribution statement -- Declaration of Competing Interest -- Acknowledgements -- Appendix A. Supplementary data -- Data availability -- References.Ye

Age of red blood cells and mortality in the critically ill

INTRODUCTION: In critically ill patients, it is uncertain whether exposure to older red blood cells (RBCs) may contribute to mortality. We therefore aimed to evaluate the association between the age of RBCs and outcome in a large unselected cohort of critically ill patients in Australia and New Zealand. We hypothesized that exposure to even a single unit of older RBCs may be associated with an increased risk of death. METHODS: We conducted a prospective, multicenter observational study in 47 ICUs during a 5-week period between August 2008 and September 2008. We included 757 critically ill adult patients receiving at least one unit of RBCs. To test our hypothesis we compared hospital mortality according to quartiles of exposure to maximum age of RBCs without and with adjustment for possible confounding factors. RESULTS: Compared with other quartiles (mean maximum red cell age 22.7 days; mortality 121/568 (21.3%)), patients treated with exposure to the lowest quartile of oldest RBCs (mean maximum red cell age 7.7 days; hospital mortality 25/189 (13.2%)) had an unadjusted absolute risk reduction in hospital mortality of 8.1% (95% confidence interval = 2.2 to 14.0%). After adjustment for Acute Physiology and Chronic Health Evaluation III score, other blood component transfusions, number of RBC transfusions, pretransfusion hemoglobin concentration, and cardiac surgery, the odds ratio for hospital mortality for patients exposed to the older three quartiles compared with the lowest quartile was 2.01 (95% confidence interval = 1.07 to 3.77). CONCLUSIONS: In critically ill patients, in Australia and New Zealand, exposure to older RBCs is independently associated with an increased risk of death

Variation in Vaccination Data Available at School Entry Across the United States

Objectives. To compile substate-level data on US school-age children’s vaccination rates. Methods. For states that did not have suitable data online, in 2015 we submitted information requests to the state health department and followed up with the state’s Freedom of Information Act when necessary. Results. The accessibility, scale, and types of vaccination data varied considerably. Whereas 26 states provided data online, 14 released data only after a Freedom of Information Act request. School or school-district data were available for 24 states, 19 at the county level, 2 at the health department level, and 6 provided no substate-level data. Conclusions. Effective vaccination policy requires a robust understanding of vaccination behavior. Some states make it difficult to access data or provide low-resolution data of limited value for identifying vaccination behavior. The relationships among vaccination recommendations and policies, vaccine uptake, and the rates of exemptions from school-entry vaccination requirements are of great interest to public health officials. This information is especially valuable when it allows the identification of specific communities where vaccination coverage rates are below recommended thresholds and populations may be more vulnerable to outbreaks. State-level data are helpful for identifying national trends in kindergarten vaccination and exemption rates,1 but they do not allow examinations of within-state differences in vaccination coverage. Vaccination-related behavior has proven to be highly spatially variable within states or larger regions.2–4 Communities with very low vaccination rates are often located in close proximity to communities with much higher vaccination rates. State-level data, or even county-level data, on vaccination coverage and exemption rates may not allow the identification of the most at-risk communities. Our ability to improve scientific knowledge about of the links between vaccination coverage rates and infectious disease outbreaks is dependent on having access to data at a fine spatial resolution. The challenges associated with accessing spatial data about immunization have been described for some individual states,4,5 but the availability of data has not been systematically examined across the country

Complexity of the Basic Reproduction Number (R0)

The basic reproduction number (R0), also called the basic reproduction ratio or rate or the basic reproductive rate, is an epidemiologic metric used to describe the contagiousness or transmissibility of infectious agents. R0 is affected by numerous biological, sociobehavioral, and environmental factors that govern pathogen transmission and, therefore, is usually estimated with various types of complex mathematical models, which make R0 easily misrepresented, misinterpreted, and misapplied. R0 is not a biological constant for a pathogen, a rate over time, or a measure of disease severity, and R0 cannot be modified through vaccination campaigns. R0 is rarely measured directly, and modeled R0 values are dependent on model structures and assumptions. Some R0 values reported in the scientific literature are likely obsolete. R0 must be estimated, reported, and applied with great caution because this basic metric is far from simple

Seawater carbonate chemistry and juvenile dungeness crab foraging behavior and lipid composition

To understand the foraging and pH sensing behavior of juvenile crab, and how this interacts with their nutritional status, we exposed recently settled second instar juveniles to either ambient pH or reduced pH for 42-d, crossed with either a 'maintenance'- or low-quantity 'challenge' diet treatment. After the experimental exposure period, we introduced crab into foraging and sensing pH behavior experiments. In the foraging experiment, we placed crab in a behavior arena with unidirectional flow, where we measured the food discovery time and time allocation of activities in 300-s trials for all individual crab. This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were provided by the author of the related paper (see Related to) to the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-05-06

Large-scale map of RNA-binding protein interactomes across the mRNA life cycle

mRNAs interact with RNA-binding proteins (RBPs) throughout their processing and maturation. While efforts have assigned RBPs to RNA substrates, less exploration has leveraged protein-protein interactions (PPIs) to study proteins in mRNA life-cycle stages. We generated an RNA-aware, RBP-centric PPI map across the mRNA life cycle in human cells by immunopurification-mass spectrometry (IP-MS) of ∼100 endogenous RBPs with and without RNase, augmented by size exclusion chromatography-mass spectrometry (SEC-MS). We identify 8,742 known and 20,802 unreported interactions between 1,125 proteins and determine that 73% of the IP-MS-identified interactions are RNA regulated. Our interactome links many proteins, some with unknown functions, to specific mRNA life-cycle stages, with nearly half associated with multiple stages. We demonstrate the value of this resource by characterizing the splicing and export functions of enhancer of rudimentary homolog (ERH), and by showing that small nuclear ribonucleoprotein U5 subunit 200 (SNRNP200) interacts with stress granule proteins and binds cytoplasmic RNA differently during stress