Ideas and perspectives: climate-relevant marine biologically driven mechanisms in Earth system models

The current generation of marine biogeochemical modules in Earth system models (ESMs) considers mainly the effect of marine biota on the carbon cycle. We propose to also implement other biologically driven mechanisms in ESMs so that more climate-relevant feedbacks are captured. We classify these mechanisms in three categories according to their functional role in the Earth system: (1) "biogeochemical pumps", which affect the carbon cycling; (2) "biological gas and particle shuttles", which affect the atmospheric composition; and (3) "biogeophysical mechanisms", which affect the thermal, optical, and mechanical properties of the ocean. To resolve mechanisms from all three classes, we find it sufficient to include five functional groups: bulk phyto- and zooplankton, calcifiers, and coastal gas and surface mat producers. We strongly suggest to account for a larger mechanism diversity in ESMs in the future to improve the quality of climate projections

Microstructure and composition of marine aggregates as co-determinants for vertical particulate organic carbon transfer in the global ocean

Marine aggregates are the vector for biogenically bound carbon and nutrients from the euphotic zone to the interior of the oceans. To improve the representation of this biological carbon pump in the global biogeochemical HAMburg Ocean Carbon Cycle (HAMOCC) model, we implemented a novel Microstructure, Multiscale, Mechanistic, Marine Aggregates in the Global Ocean (M4AGO) sinking scheme. M4AGO explicitly represents the size, microstructure, heterogeneous composition, density and porosity of aggregates and ties ballasting mineral and particulate organic carbon (POC) fluxes together. Additionally, we incorporated temperature-dependent remineralization of POC. We compare M4AGO with the standard HAMOCC version, where POC fluxes follow a Martin curve approach with (i) linearly increasing sinking velocity with depth and (ii) temperature-independent remineralization. Minerals descend separately with a constant speed. In contrast to the standard HAMOCC, M4AGO reproduces the latitudinal pattern of POC transfer efficiency, as recently constrained by Weber et al. (2016). High latitudes show transfer efficiencies of ≈0.25±0.04, and the subtropical gyres show lower values of about 0.10±0.03. In addition to temperature as a driving factor for remineralization, diatom frustule size co-determines POC fluxes in silicifier-dominated ocean regions, while calcium carbonate enhances the aggregate excess density and thus sinking velocity in subtropical gyres. Prescribing rising carbon dioxide (CO2) concentrations in stand-alone runs (without climate feedback), M4AGO alters the regional ocean atmosphere CO2 fluxes compared to the standard model. M4AGO exhibits higher CO2 uptake in the Southern Ocean compared to the standard run, while in subtropical gyres, less CO2 is taken up. Overall, the global oceanic CO2 uptake remains the same. With the explicit representation of measurable aggregate properties, M4AGO can serve as a test bed for evaluating the impact of aggregate-associated processes on global biogeochemical cycles and, in particular, on the biological carbon pump

Abschlussbericht KMU-innovativ: Verbundprojekt Titan Industrial DevOps Plattform für iterative Prozessintegration und Automatisierung

Unternehmensprozesse zu digitalisieren und dabei eine IT-Infrastruktur aufzubauen, ist komplex. Neue, zum Teil teure Technologien werden eingesetzt, jedoch fehlen erprobte Praktiken. Die daraus entstehende Komplexität lässt sich mit dem klassischen Projektmodell nur ungenügend adressieren. Klassische Planungen basieren auf Annahmen, die sich oft zu spät und als falsch erweisen. Mechanismen, den einmal geplanten Weg zum gesetzten Ziel zu korrigieren, bietet das traditionelle Projektmodell nur eingeschränkt. Ziel des titan-Projekts ist die Integration von Entwicklungswerkzeugen und Betriebs-Technologie in eine Software-Plattform. Kombiniert mit innovativen „Industrial DevOps“- Methoden soll die komplexe Aufgabe einer iterativen Systemintegration im industriellen Umfeld erheblich vereinfacht werden. Im titan-Projekt ist der Prototyp einer Software-Plattform entstanden, die es industriellen Anwendern erlaubt, diese Praktiken auf Problemstellungen der Digitalisierung anzuwenden. Neben Zielen wie Sicherstellung und Überprüfbarkeit von Qualität, Widerstandsfähigkeit und Skalierbarkeit ist die Eliminierung des Vendor-Lock-In ein zentraler Aspekt des Projekts. Insbesondere werden Prozessanpassungen durch die Anwender mittels Flow Based Automation ermöglicht, neue Softwareversionen und Veränderungen können am System routinemäßig in Betrieb genommen werden und domänenspezifische Komponenten können für komplexe Aufgaben genutzt und verwaltet werden. Im Rahmen einer Community wird die titan-Open-Source-Plattform weiterentwickelt. Die während des Projekts entstandenen Innovationen werden so verfeinert und in verschiedenen Bereichen angewendet. Die Erfahrungen aus Projekten fließen in die Software ein und werden innerhalb der Community verbreitet

Importance of seasonally resolved oceanic emissions for bromoform delivery from the tropical Indian Ocean and west Pacific to the stratosphere

Oceanic very short-lived substances (VSLSs), such as bromoform (CHBr3), contribute to stratospheric halogen loading and, thus, to ozone depletion. However, the amount, timing, and region of bromine delivery to the stratosphere through one of the main entrance gates, the Indian summer monsoon circulation, are still uncertain. In this study, we created two bromoform emission inventories with monthly resolution for the tropical Indian Ocean and west Pacific based on new in situ bromoform measurements and novel ocean biogeochemistry modeling. The mass transport and atmospheric mixing ratios of bromoform were modeled for the year 2014 with the particle dispersion model FLEXPART driven by ERA-Interim reanalysis. We compare results between two emission scenarios: (1) monthly averaged and (2) annually averaged emissions. Both simulations reproduce the atmospheric distribution of bromoform from ship- and aircraft-based observations in the boundary layer and upper troposphere above the Indian Ocean reasonably well. Using monthly resolved emissions, the main oceanic source regions for the stratosphere include the Arabian Sea and Bay of Bengal in boreal summer and the tropical west Pacific Ocean in boreal winter. The main stratospheric injection in boreal summer occurs over the southern tip of India associated with the high local oceanic sources and strong convection of the summer monsoon. In boreal winter more bromoform is entrained over the west Pacific than over the Indian Ocean. The annually averaged stratospheric injection of bromoform is in the same range whether using monthly averaged or annually averaged emissions in our Lagrangian calculations. However, monthly averaged emissions result in the highest mixing ratios within the Asian monsoon anticyclone in boreal summer and above the central Indian Ocean in boreal winter, while annually averaged emissions display a maximum above the west Indian Ocean in boreal spring. In the Asian summer monsoon anticyclone bromoform atmospheric mixing ratios vary by up to 50% between using monthly averaged and annually averaged oceanic emissions. Our results underline that the seasonal and regional stratospheric bromine injection from the tropical Indian Ocean and west Pacific critically depend on the seasonality and spatial distribution of the VSLS emissions

Incorporating a prognostic representation of marine nitrogen fixers into the global ocean biogeochemical model HAMOCC

Nitrogen (N2) fixation is a major source of bioavailable nitrogen to the euphotic zone, thereby exerting an important control on ocean biogeochemical cycling. This paper presents the incorporation of prognostic N2 fixers into the HAMburg Ocean Carbon Cycle model (HAMOCC), a component of the Max Planck Institute Earth System Model (MPI‐ESM). Growth dynamics of N2 fixers in the model are based on physiological characteristics of the cyanobacterium Trichodesmium. The applied temperature dependency confines diazotrophic growth and N2 fixation to the tropical and subtropical ocean roughly between 40°S and 40°N. Simulated large‐scale spatial patterns compare well with observations, and the global N2 fixation rate of 135.6 Tg N yr−1 is within the range of current estimates. The vertical distribution of N2 fixation also matches well the observations, with a major fraction of about 85% occurring in the upper 20 m. The observed seasonal variability at the stations BATS and ALOHA is reasonably reproduced, with highest fixation rates in northern summer/fall. Iron limitation was found to be an important factor in controlling the simulated distribution of N2 fixation, especially in the Pacific Ocean. The new model component considerably improves the representation of present‐day N2 fixation in HAMOCC. It provides the basis for further studies on the role of diazotrophs in global biogeochemical cycles, as well as on the response of N2 fixation to changing environmental conditions

26th Annual Computational Neuroscience Meeting (CNS*2017): Part 3 - Meeting Abstracts - Antwerp, Belgium. 15–20 July 2017

This work was produced as part of the activities of FAPESP Research,\ud Disseminations and Innovation Center for Neuromathematics (grant\ud 2013/07699-0, S. Paulo Research Foundation). NLK is supported by a\ud FAPESP postdoctoral fellowship (grant 2016/03855-5). ACR is partially\ud supported by a CNPq fellowship (grant 306251/2014-0)

A statistical atmosphere model

For simple analysis of stochastic climate models the ocean is often forced with a statistical atmosphere model. The atmosphere model mimics the observed statistics of the atmospheric forcing, e.g. the heat fluxes and the wind stress. This study serves as the beginning of the development of such a global statistical atmosphere model. The starting point of the development is a Monte-Carlo-like model written by Dietmar Dommenget, which is coupled to an one-dimensional model of the upper ocean. An important question in this context is how good the existing model simulates the atmospheric forcing. For that purpose the probability distribution functions of the net heat flux and the wind stress (respectively the surface fricion velocity u* ) derived from observations and a coupled run of the GCM ECHAM5 with the above mentioned ocean model are examined. The results are compared to the output of the statistical atmosphere model. The spatial and temporal patterns of the statistical moments mean, standard deviation, skewness and kurtosis are considered particularly. The investigation of the moments shows considerable differences between the model data and the observations. Especially the wind speed and thereby the friction velocity of the observations differs from that calculated by ECHAM5. The distributions of the friction velocity simulated by the statistical model deviate from both the observations and the ECHAM5 model data. By performing sensitivity studies it is shown that the deviations between the probability distribution functions have a non-negligible influence on the evolution of the sea surface temperature. The results of this analysis lead to possible modifcations of the statistical atmosphere model. Two different atmosphere models including these modifcations are presented. Another approach for the development of a statistical model, the usage of spatial correlation patterns is elucidated. Because of the enormous number of EOF modes needed to reach 90 percent of explained variance, even in the coupled EOF analysis between u* and the netflux, it is refrained from developing a statistical atmosphere based on these EOF modes. Finally an atmosphere model based on the bulk formulas is formulated as a result of a cross spectral analysis, which indicates an underrepresentation of the low-frequency variability in the SST time series caused by the direct forcing of the ocean with the surface fluxes. The SST time series simulated by this model exhibit a much higher coherency with the SST of the ECHAM5 model run

Simulated Bromoform emission and concentration using the ocean biogeochemistry model MPIOM/HAMOCC forced by 6-hourly NCEP data

Bromoform (CHBr3) is one important precursor of atmospheric reactive bromine species that are involved in ozone depletion in the troposphere and stratosphere. In the open ocean bromoform production is linked to phytoplankton that contains the enzyme bromoperoxidase. Coastal sources of bromoform are higher than open ocean sources. However, open ocean emissions are important because the transfer of tracers into higher altitude in the air, i.e. into the ozone layer, strongly depends on the location of emissions. For example, emissions in the tropics are more rapidly transported into the upper atmosphere than emissions from higher latitudes. Global spatio-temporal features of bromoform emissions are poorly constrained. Here, a global three-dimensional ocean biogeochemistry model (MPIOM-HAMOCC) is used to simulate bromoform cycling in the ocean and emissions into the atmosphere using recently published data of global atmospheric concentrations (Ziska et al., 2013) as upper boundary conditions. Our simulated surface concentrations of CHBr3 match the observations well. Simulated global annual emissions based on monthly mean model output are lower than previous estimates, including the estimate by Ziska et al. (2013), because the gas exchange reverses when less bromoform is produced in non-blooming seasons. This is the case for higher latitudes, i.e. the polar regions and northern North Atlantic. Further model experiments show that future model studies may need to distinguish different bromoform-producing phytoplankton species and reveal that the transport of CHBr3 from the coast considerably alters open ocean bromoform concentrations, in particular in the northern sub-polar and polar regions