Height growth reconstruction of a boreal forest canopy over a period of 58 years using a combination of photogrammetric and lidar models

Field data describing the height growth of trees or stands over several decades are very scarce. Consequently, our capacity of analyzing forest dynamics over large areas and long periods of time is somewhat limited. This study proposes a new method for retrospectively reconstructing plot-wise average dominant tree height based on a time series of high-resolution canopy height maps, termed canopy height models (CHMs). The absolute elevation of the canopy surface, or digital surface model (DSM), was first reconstructed by applying image-matching techniques to stereo-pairs of aerial photographs acquired in 1945, 1965, 1983, and 2003. The historical CHMs were then created by subtracting the bare earth elevation provided from a recent lidar survey from the DSMs. A method for estimating average dominant tree height from these historical CHMs was developed and calibrated for each photographic year. The accuracy of the resulting remote sensing height estimates was compared to ageheight data reconstructed based on dendrometric measurements. The height bias of the remote sensing estimates relative to the verification data ranged from 0.52 m to 1.55 m (1.16 m on average). The corresponding root-mean-square errors varied between 1.49 m and 2.88 m (2.03 m average). Despite being slightly less accurate than historical field data, the quality of the remote sensing estimates is sufficient for many types of forest dynamics studies. The procedures for implementing this method, with the exception of the calibration phase, are entirely automated such that forest height growth curves can be reconstructed and mapped over large areas for which recent lidar data and historical photographs exist

Ocean and climate changes in polar and sub-polar environments: proceedings from the 2010 IODP-Canada/ECORD summer school

The European Consortium for Ocean Drilling Program (ECORD), the Canadian Consortium for Ocean Drilling (CCOD), the Network of the Universités du Québec (UQ), the Université du Québec à Montréal (UQAM) and GEOTOP sponsored, in 2010, a summer school entitled Ocean and climate changes in polar and sub-polar environments. This summer school took place from 27 June to 12 July in Rimouski, Québec city and Montréal (Quebec, Canada) and was attended by nineteen students and postdoctoral fellows from seven countries: Canada, France, Germany, UK, Serbia, Portugal and the USA. Lectures, hands-on laboratory exercises and laboratory visits were conducted at the Institut des Sciences de la Mer de Rimouski (ISMER), Institut National de la Recherche Scientifique Centre Eau Terre Environnement (INRS-ETE) and UQAM, in addition to two field trips and a short geological and geophysical cruise on board the R/V Coriolis II in the St Lawrence Estuary and Saguenay Fjord. During the summer school, more than twenty researchers gave lectures on the use of several paleoceanographic and geophysical techniques to reconstruct ocean and climate changes in polar and sub-polar environments. Some of these lectures are presented as short review papers in this volume. They are intended to portray a brief, but state-of-the-art overview of an array of techniques applied to Arctic and sub-Arctic environments, as well as the geological background information needed by the summer school participants to put the scientific expedition and fieldwork into context. The volume begins with a view on the great challenges and key issues to be addressed in the Arctic Ocean (Stein) in the forthcoming years and is followed by a review (O'Regan) on Late Cenozoic paleoceanography of the Central Arctic. The two subsequent papers (St-Onge et al and de Vernal et al) deal with the oceanographic, paleoceanographic and geological context of the Saguenay Fjord, and St Lawrence Estuary and Gulf. The subsequent set of papers review the use of planktonic foraminifers (Eynaud), diatoms (Crosta) and dinocysts (de Vernal and Rochon) in polar or sub-polar environments. These articles are followed by a paper on transfer functions (Guiot) summarizing the different approaches used to reconstruct past environmental conditions from micropaleontological proxy data. Two papers on geochemical and isotopic proxies are then presented and related to either foraminifera isotopic records (Hillaire-Marcel) in high northern latitudes or changes in ocean circulation and weathering inputs derived from radiogenic isotopes (Frank). The volume concludes with a paper on the application of visible/near infrared derivative spectroscopy to Arctic sediments (Ortiz). All the papers published in this volume benefited from the reviews of at least two reviewers, whom we thank for their valuable time and comments. We also thank the crew of the Coriolis II, and the many scientists, participants and volunteers who contributed to the summer ..

Baffin Bay paleoenvironments in the LGM and HS1: Resolving the ice-shelf question

Core HU2008029-12PC from the Disko trough mouth fan on the central West Greenland continental slope is used to test whether an ice shelf covered Baffin Bay during the Last Glacial Maximum (LGM) and at the onset of the deglaciation. We use benthic and planktic foraminiferal assemblages, stable isotope analysis of planktic forams, algal biomarkers, ice-rafted detritus (IRD), lithofacies characteristics defined from CT scans, and quantitative mineralogy to reconstruct paleoceanographic conditions, sediment processes and sediment provenance. The chronology is based on radiocarbon dates on planktic foraminifers using a ∆ R of 140 ± 30 14C years, supplemented by the varying reservoir estimates of Stern and Lisiecki (2013) that provide an envelope of potential ages. HU2008029-12PC is bioturbated throughout. Sediments between the core base at 11.3 m and 4.6 m (LGM through HS1) comprise thin turbidites, plumites and hemipelagic sediments with Greenlandic provenance consistent with processes active at the Greenland Ice Sheet margin grounded at or near the shelf edge. Abundance spikes of planktic forams coincide with elevated abundance of benthic forams in assemblages indicative of chilled Atlantic Water, meltwater and intermittent marine productivity. IRD and IP25 are rare in this interval, but brassicasterol, an indicator of marine productivity reaches and sustains low levels during the LGM. These biological characteristics are consistent with a sea-ice covered ocean experiencing periods of more open water such as leads or polynyas in the sea ice cover, with chilled Atlantic Water at depth, rather than full ice-shelf cover. They do not support the existence of a full Baffin Bay ice shelf cover extending from grounded ice on the Davis Strait. Initial ice retreat from the West Greenland margin is manifested by a pronounced lithofacies shift to bioturbated, diatomaceous mud with rare IRD of Greenlandic origin at 467 cm (16.2 cal ka BP; ∆ R = 140 yrs) within HS1. A spike in foraminiferal abundance and ocean warmth indicator benthic forams precedes the initial ice retreat from the shelf edge. At the end of HS1, IP25, brassicasterol and benthic forams indicative of sea-ice edge productivity increase, indicating warming interstadial conditions. Within the Bølling/Allerød interstadial a strong rise in IP25 content and IRD spikes rich in detrital carbonate from northern Baffin Bay indicate that northern Baffin Bay ice streams were retreating and provides evidence for increased open water, advection of Atlantic Water in the West Greenland Current, and formation of an IRD belt along the W. Greenland margin

Ptarmigan Fiord basement-cover thrust imbricates, Baffin Island, Nunavut

The rocks at Ptarmigan Fiord on the Hall Peninsula of Baffin Island underwent midcrustal deformation during the formation of the Paleoproterozoic Trans-Hudson Orogen. The structural style in the region is dominated by imbricate panels of Archean basement orthogneiss and Paleoproterozoic supracrustal strata, interpreted to have been deformed by thick- skinned ductile thrusting. Basement rocks comprise amphibolite-facies metatonalite, metagranodiorite, metaquartz-diorite and metamonzogranite, and cover rocks comprise amphibolite-facies migmatitic pelitic and semipelitic schist, psammitic schist, amphibolite, calcsilicate and quartzite. The S 1a penetrative foliation is variably present in basement rocks and consis- tently present in cover rocks, and is defined by alignment of biotite, sillimanite and leucogranite that formed before and dur- ing the thermal metamorphic peak. The S 1a foliation was deformed by F 1b isoclinal folds with an amplitude of 100 m. These structures are interpreted as forming during a D 1 east-west crustal shortening event. Basement and cover imbrication oc- curred after the thermal metamorphic peak and is interpreted as D 2 thick-skinned ductile thrusting. Ductile thrust faults at the base of seven basement-cover slices are identified on the basis of repetition of units and strain localization, and are inter- preted as predominantly south-to-southeast verging on the basis of shear-sense indicators. There are two structural panels of D 2 thrust imbricates, one in the northwestern part of the map area and one in the eastern part of the map area. Map-scale crosscutting relationships indicate that the northwestern panel overthrusted the eastern panel on a southeasterly T 2c -di- rected thrust fault, following a F 2b folding event that folded the T 2a basement-cover thrust imbricates in the eastern panel. The Ptarmigan Fiord area contains a world-class exposure of thick-skinned structures as they are spectacularly delineated by belts of distinctive grey-weathering Archean basement rocks and brown- to black-weathering Paleoproterozoic supra- crustal rocks

Implications of differing input data sources and approaches upon forest carbon stock estimation

Site index is an important forest inventory attribute that relates productivity and growth expectation of forests over time. In forest inventory programs, site index is used in conjunction with other forest inventory attributes (i.e., height, age) for the estimation of stand volume. In turn, stand volumes are used to estimate biomass (and biomass components) and enable conversion to carbon. In this research, we explore the implications and consequences of different estimates of site index on carbon stock characterization for a 2,500-ha Douglas-fir-dominated landscape located on Eastern Vancouver Island, British Columbia, Canada. We compared site index estimates from an existing forest inventory to estimates generated from a combination of forest inventory and light detection and ranging (LIDAR)-derived attributes and then examined the resultant differences in biomass estimates generated from a carbon budget model (Carbon Budget Model of the Canadian Forest Sector (CBM-CFS3)). Significant differences were found between the original and LIDAR-derived site indices for all species types and for the resulting 5-m site classes (p < 0.001). The LIDAR-derived site class was greater than the original site class for 42{\%} of stands; however, 77{\%} of stands were within +/-1 site class of the original class. Differences in biomass estimates between the model scenarios were significant for both total stand biomass and biomass per hectare (p < 0.001); differences for Douglas-fir-dominated stands (representing 85{\%} of all stands) were not significant (p = 0.288). Overall, the relationship between the two biomass estimates was strong (R(2) = 0.92, p < 0.001), suggesting that in certain circumstances, LIDAR may have a role to play in site index estimation and biomass mapping

Quantifying Water Diffusivity and Metamorphic Reaction Rates Within Mountain Belts, and Their Implications for the Rheology of Cratons

Abstract: The distribution of rheologically strong cratons, and their weakening by metamorphic hydration reactions, is of fundamental importance for understanding first‐order strength contrasts within the crust and the resulting controls on the tectonic evolution of the continents. In this study, the Douglas Harbor structural window within the Paleoproterozoic Trans‐Hudson orogen of Canada is used to study the hydration of the footwall Archean Superior craton basement by water released from the overlying Paleoproterozoic Cape Smith thrust‐fold belt. Phase equilibria modeling is applied to quantify the Archean and Paleoproterozoic metamorphic conditions, and to determine the effect of hydration on basement mineralogy. The amount of structurally bound water within the basement is calculated and shown to decrease as a function of distance below the basal décollement of the thrust‐fold belt. Applying a reactive fluid transport model to these results, the rate coefficient for fluid‐rock reaction is constrained to be 10 − 19 m o l − 1 m 3 s − 1 , and the diffusivity of water through the grain boundary network to be 10 − 9 m 2 s − 1 at the ambient metamorphic conditions of 570 ° C and 7.5 kbar. This newly documented rate of water diffusion is three orders of magnitude slower than thermal diffusion, implying that hydration by diffusion may be the rate‐limiting factor in the weakening of cratons, and therefore plays an important role in their geological persistence. This conclusion is consistent with field observations that Paleoproterozoic strain in the Douglas Harbor structural window is restricted to hydrated portions of the Archean Superior craton basement

Forschendes Lernen. Konzeptuelle Grundlagen und Potenziale digitaler Medien

Im folgenden Artikel wird dargelegt, was unter dem Konzept des forschenden Lernens zu verstehen ist und welche Einsatzmöglichkeiten sich für das forschende Lernen im Kontext Universität ergeben. Dabei werden speziell diejenigen Merkmale theoretisch herausgearbeitet, die aus Lehrendenperspektive Anknüpfungspunkte für einen prozessbegleitenden Medieneinsatz bieten. Exemplarisch wird eine Lehrveranstaltung angeführt, die auf Fallebene zeigt, wie ein forschungsorientiertes Seminar um digitale Medien angereichert werden kann und welche Chancen und Grenzen sich bei der selbstgesteuerten Verwendung digitaler Medienangebote ergeben. Die Evaluation des Seminars zeigt, dass die Studierenden einen großen Lernzuwachs erleben, jedoch teilweise durch die Offenheit des Lernens überfordert sind. Diese und andere Gründe führen dazu, dass die von Lehrenden vorgeschlagenen Medienangebote selten bis kaum genutzt werden. Zudem sehen Lernende die Qualität virtuell distribuierter Inhalte kritisch, was sich auf die Akzeptanz und die Nutzung der vorhandenen digitalen Medienangebote auswirkt. (DIPF/Orig.

Molecular probe technology detects bacteria without culture

<p>Abstract</p> <p>Background</p> <p>Our ultimate goal is to detect the entire human microbiome, in health and in disease, in a single reaction tube, and employing only commercially available reagents. To that end, we adapted molecular inversion probes to detect bacteria using solely a massively multiplex molecular technology. This molecular probe technology does not require growth of the bacteria in culture. Rather, the molecular probe technology requires only a sequence of forty sequential bases unique to the genome of the bacterium of interest. In this communication, we report the first results of employing our molecular probes to detect bacteria in clinical samples.</p> <p>Results</p> <p>While the assay on Affymetrix GenFlex Tag16K arrays allows the multiplexing of the detection of the bacteria in each clinical sample, one Affymetrix GenFlex Tag16K array must be used for each clinical sample. To multiplex the clinical samples, we introduce a second, independent assay for the molecular probes employing Sequencing by Oligonucleotide Ligation and Detection. By adding one unique oligonucleotide barcode for each clinical sample, we combine the samples after processing, but before sequencing, and sequence them together.</p> <p>Conclusions</p> <p>Overall, we have employed 192 molecular probes representing 40 bacteria to detect the bacteria in twenty-one vaginal swabs as assessed by the Affymetrix GenFlex Tag16K assay and fourteen of those by the Sequencing by Oligonucleotide Ligation and Detection assay. The correlations among the assays were excellent.</p