A Detection Method for Tropical Race 4 of the Banana Pathogen Fusarium oxysporum f. sp. cubense

Fusarium oxysporum f. sp. cubense (Foc) is the causal agent of Fusarium wilt, the devastating disease that ruined the ‘Gros Michel’ (AAA)-based banana production in the first half of the 20th century. The occurrence of a new variant in Southeast Asia that overcomes the resistance in Cavendish clones such as ‘Grand Naine’ (AAA) is a major concern to current banana production worldwide. The threat posed by this new variant, called tropical race 4 (TR4), may be overcome by the introduction of resistant cultivars. However, the identification of new resistant sources or breeding for resistance is a long-term effort. Currently, the only option to control the disease is to avoid or reduce the spread of the pathogen by eradication of infected plants and isolation of infested plantations. This requires sensitive and highly specific diagnostics that enable early detection of the pathogen. A two-locus database of DNA sequences, from over 800 different isolates from multiple formae speciales of F. oxysporum, was used to develop a molecular diagnostic tool that specifically detects isolates from the vegetative compatibility group (VCG) 01213, which encompasses the Foc TR4 genotype. This diagnostic tool was able to detect all Foc TR4 isolates tested, while none of the Foc isolates from 19 VCGs other than 01213 showed any reaction. In addition, the developed diagnostic tool was able to detect Foc TR4 when using DNA samples from different tissues of ‘Grand Naine’ plants inoculated with TR4 isolate

Agronomic evaluation of a Colombian passion fruit (Passiflora edulis Sims) germplasm collection

ArticlePassion fruit (Passiflora edulis Sims) is one of the most promissory crops in Colombia with approximately 7,400 ha cultivated, an average production of 89,000 t and an average yield of 15 t ha-1. However, low yields as well as harvest problems including fruit quality, generate important losses, mainly due to lack of improved cultivars with particular characteristics for each market (fresh consumption, agroindustry) and specific adaptations to biotic and abiotic stress factors in producer areas. Therefore, as a pre-breeding phase, this study aimed at characterizing preliminary the production and physiochemical characteristics of 60 passion fruit germplasm accessions maintained in Corporación Colombiana de Investigación Agropecuaria (AGROSAVIA). We cultivated these accessions in the field for 22 months between 2014 and 2015, measuring 17 variables associated to both yield production and fruit quality. We analysed data using phenetic and multivariate methods to establish levels of genetic diversity. Additionally, we constructed a selection index (SI) with the most informative variables to select individuals according to fruit weight, shape and colour, as well as juice percentage. Results of genetic grouping and principal components showed a broad genetic diversity across the working collection, without any population substructure. Fruit volume, pulp and seed weight were the variables that explained 80% of the phenotypic variation. Finally, we identified 30 promissory accessions as parental for the first cycle of recurrent selection using the SI. We conclude that this core collection represents the diversity included in the working collection with promissory accessions to initiate an intra-population recurrent selection program

Identification and Validation of EST-Derived Molecular Markers, TRAP and VNTRs, for Banana Research

The advent of high-throughput sequencing technology has generated abundant information on DNA sequences for the genomes of many plant species. Expressed Sequence Tags (ESTs), which are unique DNA sequences derived from a cDNA library and therefore representing genes transcribed in specific tissues or at some stage of development, are one type of DNA sequences highly available today for many important crop species. Molecular markers are used for bridging DNA sequence information with particular phenotypes and are useful tools for genotyping germplasm collections and also for tagging genes involved in desirable agronomic traits. In this sense, there is always a strong demand for suitable marker techniques to better utilise existing sequence information. A transcriptome database from banana (Musa spp.), DATAMusa, containing 42,724 ESTs from 11 different cDNA libraries and encompassing approximately 24 Mb of DNA sequence, was used in this study for the design of primers to PCR-amplify two types of EST-derived molecular markers, Variable Nucleotide Tandem Repeat (VNTR) and Target Region Amplification Polymorphism (TRAP). These primers were then validated against a panel of 14 diploid Musa genotypes and produced 32 (VNTR) and 119 (TRAP) alleles. Used separately or together, both types of markers were able to discriminate Musa genotypes from different genome background (A or B genomes). The TRAP alleles identified were derived from only one EST, while the VNTR alleles were derived from 12 unigenes. Based on the results of this study, EST-derived markers can be an important source of polymorphism to be used in genetic diversity and gene discovery studies in banan

Use Of Organic Compost Containing Waste From Small Ruminants In Corn Production

Composting is a useful way of transforming livestock waste into organic fertilizer, which is proven to increase soil nutrient levels, and thus crop yield. Remains from production and slaughter of small ruminants can become a source of important elements for plant growth, such as N, after microorganism-driven decomposition.The aim of this investigation was to evaluate the effects of this compost on soil fertility and on the nutritional status and yield of the corn crop. The experiment was conducted in a Haplic Luvisol in a randomized block design with six treatments and five application rates of the organic compound in Mg ha-1: 3 (half the standard rate), 6 (standard rate), 9 (one and a half times the standard rate), 12 (twice the standard rate), and 24 (four times the standard rate) and an additional treatment with mineral fertilizers (110, 50 e 30 kg ha-1 of N, P2O5 and K2O, respectively), with four blocks. Evaluations were performed for two harvests of rainfed crops, measuring soil fertility, nutritional status, and grain yield. The compost increased P, K, Na and Zn values in the 0.00-0.20 m layer in relation of mineral fertilization in 616, 21, 114 and 90% with rate 24 Mg ha-1 in second crop. Leaf N, Mg, and S contents, relative chlorophyll content, and the productivity of corn kernels increased in 27, 32, 36, 20 e 85%, respectively, of low rate (3 Mg ha-1) to high rate (24 Mg ha-1) with of application of the compost. Corn yield was higher with application of organic compost in rate of 24 Mg ha-1 than mineral fertilizer combination in second crop. © 2016, Revista Brasileira de Ciencia do Solo. All rights reserved.4

Effective Action for QED with Fermion Self-Interaction in D=2 and D=3 Dimensions

In this work we discuss the effect of the quartic fermion self-interaction of Thirring type in QED in D=2 and D=3 dimensions. This is done through the computation of the effective action up to quadratic terms in the photon field. We analyze the corresponding nonlocal photon propagators nonperturbatively in % \frac{k}{m}, where k is the photon momentum and m the fermion mass. The poles of the propagators were determined numerically by using the Mathematica software. In D=2 there is always a massless pole whereas for strong enough Thirring coupling a massive pole may appear . For D=3 there are three regions in parameters space. We may have one or two massive poles or even no pole at all. The inter-quark static potential is computed analytically in D=2. We notice that the Thirring interaction contributes with a screening term to the confining linear potential of massive QED_{2}. In D=3 the static potential must be calculated numerically. The screening nature of the massive QED$_{3}$ prevails at any distance, indicating that this is a universal feature of % D=3 electromagnetic interaction. Our results become exact for an infinite number of fermion flavors.Comment: Latex, 13 pages, 3 figure

Performance And Economic Analysis Of Finished Lambs In Feedlot

This study aimed to evaluate animal performance and economic performance of feedlot crossbred lambs (Santa Inês+ - Suffolk) fed different diets based on hay from Cynodon dactylon genotypes, through the use of financial measures considering only the period of feedlot, without relating it to the complete management cycle. A total of 30 intact crossbred Suffolk lambs, identified with earrings, with an average age of 90 days and an average body weight of 21.5 kg were used in this study. Diets were formulated using as treatments a standard concentrate and hay of the Cynodon dactylon genotypes Jiggs, Vaquero, Tifton 68, Coast-Cross, Tifton 85 and Russell in a 60:40 forage-to-concentrate ratio. The treatments were distributed in a randomized complete block design with five replicates. There were significant differences between diets in terms of total expenditure on food, and the highest values were obtained for the Jiggs genotype (BRL 48.96/animal). The animals fed diets based on Tifton 68 hay had a higher rate of return (2.16%) and profitability (34.63%) compared to the other diets. The use of diets based on Tifton 68 hay for feedlot lambs in the finishing phase brings higher economic returns compared to the remaining diets.37129330

Structural aspects of the fermion-boson mapping in two-dimensional gauge and anomalous gauge theories with massive fermions

Using a synthesis of the functional integral and operator approaches we discuss the fermion-boson mapping and the role played by the Bose field algebra in the Hilbert space of two-dimensional gauge and anomalous gauge field theories with massive fermions. In the $QED_2$ with quartic self-interaction among massive fermions, the use of an auxiliary vector field introduces a redundant Bose field algebra that should not be considered as an element of the intrinsic algebraic structure defining the model. In the anomalous chiral $QED_2$ with massive fermions the effect of the chiral anomaly leads to the appearance in the mass operator of a spurious Bose field combination. This phase factor carries no fermion selection rule and the expected absence of $\theta$-vacuum in the anomalous model is displayed from the operator solution. Even in the anomalous model with massive Fermi fields, the introduction of the Wess-Zumino field replicates the theory, changing neither its algebraic content nor its physical content.Comment: 26 pages, Revte

Structural Aspects of Two-Dimensional Anomalous Gauge Theories

A foundational investigation of the basic structural properties of two-dimensional anomalous gauge theories is performed. The Hilbert space is constructed as the representation of the intrinsic local field algebra generated by the fundamental set of field operators whose Wightman functions define the model. We examine the effect of the use of a redundant field algebra in deriving basic properties of the models and show that different results may arise, as regards the physical properties of the generalized chiral model, in restricting or not the Hilbert space as representation of the intrinsic local field algebra. The question referring to considering the vector Schwinger model as a limit of the generalized anomalous model is also discussed. We show that this limit can only be consistently defined for a field subalgebra of the generalized model.Comment: 40 pages. Latex, to appear in Annals of Physic

Nonlinear absolutely summing operators revisited

In the last decades many authors have become interested in the study of multilinear and polynomial generalizations of families of operator ideals (such as, for instance, the ideal of absolutely summing operators). However, these generalizations must keep the essence of the given operator ideal and there seems not to be a universal method to achieve this. The main task of this paper is to discuss, study, and introduce multilinear and polynomial extensions of the aforementioned operator ideals taking into account the already existing methods of evaluating the adequacy of such generalizations. Besides this subject's intrinsic mathematical interest, the main motivation is our belief (based on facts that shall be presented) that some of the already existing approaches are not adequate