Data for: Ecosystem hero and villain: Native Luzon wart frog consumes rice pests, while the invasive cane toad feasts on beneficial arthropods

Raw Diet Data Description: Number of prey items found and identified within the stomachs of individual rice fields amphibians in 2015 and 2017, and appropriate classification of those prey items to order, family or genus, as well as by pest type and trophic guild. Raw Data for NMDS Description: Data of prey items consumed by individual amphibians, with identification to order only, formatted for construction of an NMDS and use in R package vegan. Meta data is also included

Data for: Ecosystem hero and villain: Native Luzon wart frog consumes rice pests, while the invasive cane toad feasts on beneficial arthropods

Raw Diet Data Description: Number of prey items found and identified within the stomachs of individual rice fields amphibians in 2015 and 2017, and appropriate classification of those prey items to order, family or genus, as well as by pest type and trophic guild. Raw Data for NMDS Description: Data of prey items consumed by individual amphibians, with identification to order only, formatted for construction of an NMDS and use in R package vegan. Meta data is also included.THIS DATASET IS ARCHIVED AT DANS/EASY, BUT NOT ACCESSIBLE HERE. TO VIEW A LIST OF FILES AND ACCESS THE FILES IN THIS DATASET CLICK ON THE DOI-LINK ABOV

Faunal biodiversity in rice-dominated wetlands - an essential component of sustainable rice production

Rice agriculture provides wetlands and complex habitats supporting biodiversity. Wetlands associated with rice agriculture since the 1960s have increased by 32% and now form nearly 12% of wetlands globally at a time when vast areas of natural wetlands are being lost. In this chapter, we set our sights beyond Sustainable Development Goal (SDG) 2 that focuses on ending hunger and achieving food security via the promotion of sustainable agriculture. Often, agricultural scientists are so motivated to achieve food security that they pay insufficient attention to the need to have a healthy and dynamic agroecosystem that promotes floral and faunal biodiversity, which may also provide ecosystem services including support for food security of smallholder families. Because of their aquatic, semi-aquatic, and terrestrial ecological phases, rice fields represent a changing mosaic of ecological niches and have the potential to sustain a broad diversity of wildlife. In addition, a multitude of studies have investigated how modifications to rice cultivation have the potential to support a greater diversity of species across biological scales while often maintaining or increasing yield. SDG 15 emphasizes the need to promote sustainable use of terrestrial ecosystems and halt biodiversity loss. Given the high losses in global biodiversity, especially in tropical zones where most of the world’s rice is grown, we set our sights on achieving both SDGs 2 and 15. We provide case studies on amphibians, bats, birds, and rodents living in and around irrigated rice-cropping systems. We report on transdisciplinary studies supported by CORIGAP that include agronomic, sociological, ecological, biochemical, environmental physiological, and genomic studies. Most of these studies identify potential positive ecosystem services provided by wildlife, which can lead to more sustainable and healthier rice production landscapes. We conclude that our current management of rice landscapes contributes to the biodiversity crisis. Rice production often overuses pesticides and fertilizers and applies unsustainable intensification practices and land modifications, which result in biodiversity loss. Finding a balance, where human population requirements for food are met without degrading the natural environment, is critical to the health of smallholder agricultural communities. We propose that future research and development projects need to: build capacity of countries to scale-up use of proven practices that reduce rice farming’s ecological footprint and conserve biodiversity, increase investment in biodiversity research in rice production landscapes, promote Green “Rice Value Chains” and “Agri-input Markets,” and monitor and evaluate the ecological benefits to biodiversity of broad scale promotion of sustainable rice production. Keywords Faunal biodiversity - Sustainable Development Goal (SDG) - Ecological footprint -Sustainable rice production

Polintons: a hotbed of eukaryotic virus, transposon and plasmid evolution

International audiencePolintons (also known as Mavericks) are large DNA transposons that are widespread in the genomes of eukaryotes. We have recently shown that Polintons encode virus capsid proteins, which suggests that these transposons might form virions, at least under some conditions. In this Opinion article, we delineate the evolutionary relationships among bacterial tectiviruses, Polintons, adenoviruses, virophages, large and giant DNA viruses of eukaryotes of the proposed order 'Megavirales', and linear mitochondrial and cytoplasmic plasmids. We hypothesize that Polintons were the first group of eukaryotic double-stranded DNA viruses to evolve from bacteriophages and that they gave rise to most large DNA viruses of eukaryotes and various other selfish genetic elements

Microvesicles from malaria-infected red blood cells activate natural killer cells via MDA5 pathway

Natural killer (NK) cells provide the first line of defense against malaria parasite infection. However, the molecular mechanisms through which NK cells are activated by parasites are largely unknown, so is the molecular basis underlying the variation in NK cell responses to malaria infection in the human population. Here, we compared transcriptional profiles of responding and non-responding NK cells following exposure to Plasmodium-infected red blood cells (iRBCs) and identified MDA5, a RIG-I-like receptor involved in sensing cytosolic RNAs, to be differentially expressed. Knockout of MDA5 in responding human NK cells by CRISPR/cas9 abolished NK cell activation, IFN-γ secretion, lysis of iRBCs. Similarly, inhibition of TBK1/IKKε, an effector molecule downstream of MDA5, also inhibited activation of responding NK cells. Conversely, activation of MDA5 by liposome-packaged poly I:C restored non-responding NK cells to lyse iRBCs. We further show that microvesicles containing large parasite RNAs from iRBCs activated NK cells by fusing with NK cells. These findings suggest that NK cells are activated through the MDA5 pathway by parasite RNAs that are delivered to the cytoplasm of NK cells by microvesicles from iRBCs. The difference in MDA5 expression between responding and non-responding NK cells following exposure to iRBCs likely contributes to the variation in NK cell responses to malaria infection in the human populatio