Multi-element cylindrical electrostatic lens systems for focusing and controlling charged particles

This paper describes theoretical modelling of electrostatic lenses based on 3, 4 and 5 closely spaced cylindrical electrodes, respectively. In each case, modelling is carried out numerically using commercial packages SIMION and LENSYS, and a variety of performance parameters are obtained. These include the magnification, the 3rd order spherical and chromatic aberration coefficients. Special cases such as zoom lens (i.e., lenses whose magnification may be changed without losing focus) are considered. Results are obtained as a function of the ratios of the electrode lengths and gaps, and as a function of ratios of the controlling voltages. As a result, it is shown that how a multi-element lens system can be operated with the whole focal properties in a useful mode for using in experimental studies.Comment: 20 pages, 15 figure

Resurrecting the Dead (Molecules)

Biological molecules, like organisms themselves, are subject to genetic drift and may even become “extinct”. Molecules that are no longer extant in living systems are of high interest for several reasons including insight into how existing life forms evolved and the possibility that they may have new and useful properties no longer available in currently functioning molecules. Predicting the sequence/structure of such molecules and synthesizing them so that their properties can be tested is the basis of “molecular resurrection” and may lead not only to a deeper understanding of evolution, but also to the production of artificial proteins with novel properties and even to insight into how life itself began

Angles of vision: digital storytelling on the cosmic tide?

In this report, a collaboration between Robert Gordon University and the University of the Highlands and Islands Institute for Northern Studies, the authors bring together findings from four workshops hosted as part of the My Orkney Story project. It aims to address the opportunities and challenges of developing digital storytelling platforms through the lens of Orkney as a case study. However, the findings from this report are also intended to have a wider relevancy to the development and implementation of digital story platforms at a local and international level

Structural and functional characterization of the Redβ recombinase from bacteriophage λ

The Red system of bacteriophage λ is responsible for the genetic rearrangements that contribute to its rapid evolution and has been successfully harnessed as a research tool for genome manipulation. The key recombination component is Redβ, a ring-shaped protein that facilitates annealing of complementary DNA strands. Redβ shares functional similarities with the human Rad52 single-stranded DNA (ssDNA) annealing protein although their evolutionary relatedness is not well established. Alignment of Rad52 and Redβ sequences shows an overall low level of homology, with 15% identity in the N-terminal core domains as well as important similarities with the Rad52 homolog Sak from phage ul36. Key conserved residues were chosen for mutagenesis and their impact on oligomer formation, ssDNA binding and annealing was probed. Two conserved regions were identified as sites important for binding ssDNA; a surface basic cluster and an intersubunit hydrophobic patch, consistent with findings for Rad52. Surprisingly, mutation of Redβ residues in the basic cluster that in Rad52 are involved in ssDNA binding disrupted both oligomer formation and ssDNA binding. Mutations in the equivalent of the intersubunit hydrophobic patch in Rad52 did not affect Redβ oligomerization but did impair DNA binding and annealing. We also identified a single amino acid substitution which had little effect on oligomerization and DNA binding but which inhibited DNA annealing, indicating that these two functions of Redβ can be separated. Taken together, the results provide fresh insights into the structural basis for Redβ function and the important role of quaternary structure