Large-scale ocean connectivity and planktonic body size

Villarino, Ernesto ... et al.-- 13 pages, 5 figures, 5 tables, supplementary material https://dx.doi.org/10.1038/s41467-017-02535-8Global patterns of planktonic diversity are mainly determined by the dispersal of propagules with ocean currents. However, the role that abundance and body size play in determining spatial patterns of diversity remains unclear. Here we analyse spatial community structure - β-diversity - for several planktonic and nektonic organisms from prokaryotes to small mesopelagic fishes collected during the Malaspina 2010 Expedition. β-diversity was compared to surface ocean transit times derived from a global circulation model, revealing a significant negative relationship that is stronger than environmental differences. Estimated dispersal scales for different groups show a negative correlation with body size, where less abundant large-bodied communities have significantly shorter dispersal scales and larger species spatial turnover rates than more abundant small-bodied plankton. Our results confirm that the dispersal scale of planktonic and micro-nektonic organisms is determined by local abundance, which scales with body size, ultimately setting global spatial patterns of diversityThis research was funded by the project Malaspina 2010 Circumnavigation Expedition (Consolider-Ingenio 2010, CSD2008-00077) and cofounded by the Basque Government (Department Deputy of Agriculture, Fishing and Food Policy). [...] E.V. was supported by a PhD Scholarship granted by the Iñaki Goenaga−Technology Centres FoundationPeer Reviewe

Consensus of experts from the Spanish Pharmacogenetics and Pharmacogenomics Society and the Spanish Society of Medical Oncology for the genotyping of DPYD in cancer patients who are candidates for treatment with fluoropyrimidines

5-Fluorouracil (5-FU) and oral fluoropyrimidines, such as capecitabine, are widely used in the treatment of cancer, especially gastrointestinal tumors and breast cancer, but their administration can produce serious and even lethal toxicity. This toxicity is often related to the partial or complete deficiency of the dihydropyrimidine dehydrogenase (DPD) enzyme, which causes a reduction in clearance and a longer half-life of 5-FU. It is advisable to determine if a DPD deficiency exists before administering these drugs by genotyping DPYD gene polymorphisms. The objective of this consensus of experts, in which representatives from the Spanish Pharmacogenetics and Pharmacogenomics Society and the Spanish Society of Medical Oncology participated, is to establish clear recommendations for the implementation of genotype and/or phenotype testing for DPD deficiency in patients who are candidates to receive fluoropyrimidines. The genotyping of DPYD previous to treatment classifies individuals as normal, intermediate, or poor metabolizers. Normal metabolizers do not require changes in the initial dose, intermediate metabolizers should start treatment with fluoropyrimidines at doses reduced to 50%, and poor metabolizers are contraindicated for fluoropyrimidines

Temporal and spatial distribution fatal occupational injuries in Ecuador

Introduction: Ecuador is a country in South America, divided geographically by the Andean Mountain Range.  With the approval of the Resolution No C.D. 333 in 2010, companies are compelled to report all occupational accidents and diseases to the corresponding Occupational Health Public Organisms. Currently, there are no studies on the geographic and temporal distribution of deadly occupational accidents in the country. Objective: The objective of this study was to determine the temporal and geographic distribution of fatal occupational accidents (FOA) in Ecuador. Material-Methods: Ecologic Study of temporal and geographical distribution of FOA in the 24 provinces of Ecuador between 2010 and 2016. Data was obtained thru official secondary information sources. Gross and Adjusted Mortality Rates were calculated for workers affiliated to the General Mandatory Insurance, allowing the space representation in terms of the object of study. Results: During the period analyzed, 1.748 workers have passed due to work related accidents in Ecuador. The Gross Mortality Rate (x100.000-affiliated workers) presents a decreasing tendency from 2010 (13.2) to 2014 (6.3), increasing for 2015 (9.5). The main provinces with a higher Adjusted Mortality Rate (x10.000-affiliated workers) are located in the Amazon Region: Morona Santiago, Napo, Orellana and Sucumbíos. Conclusions: Ecuadorian Geography implies important differences in terms of FOA distribution by provinces and the compliance of legal norms in Safety and Occupational Health thru time. The temporal distribution and geographic representation of this phenomenon will allow the corresponding public control entities to identify provinces with high mortality rates and implement specific actions to prevent. The results of this study will help establish future research lines that will analyze more in depth this issue

Disentangling the mechanisms shaping the surface ocean microbiota

BACKGROUND: The ocean microbiota modulates global biogeochemical cycles and changes in its configuration may have large-scale consequences. Yet, the underlying ecological mechanisms structuring it are unclear. Here, we investigate how fundamental ecological mechanisms (selection, dispersal and ecological drift) shape the smallest members of the tropical and subtropical surface-ocean microbiota: prokaryotes and minute eukaryotes (picoeukaryotes). Furthermore, we investigate the agents exerting abiotic selection on this assemblage as well as the spatial patterns emerging from the action of ecological mechanisms. To explore this, we analysed the composition of surface-ocean prokaryotic and picoeukaryotic communities using DNA-sequence data (16S- and 18S-rRNA genes) collected during the circumglobal expeditions Malaspina-2010 and TARA-Oceans. RESULTS: We found that the two main components of the tropical and subtropical surface-ocean microbiota, prokaryotes and picoeukaryotes, appear to be structured by different ecological mechanisms. Picoeukaryotic communities were predominantly structured by dispersal-limitation, while prokaryotic counterparts appeared to be shaped by the combined action of dispersal-limitation, selection and drift. Temperature-driven selection appeared as a major factor, out of a few selected factors, influencing species co-occurrence networks in prokaryotes but not in picoeukaryotes, indicating that association patterns may contribute to understand ocean microbiota structure and response to selection. Other measured abiotic variables seemed to have limited selective effects on community structure in the tropical and subtropical ocean. Picoeukaryotes displayed a higher spatial differentiation between communities and a higher distance decay when compared to prokaryotes, consistent with a scenario of higher dispersal limitation in the former after considering environmental heterogeneity. Lastly, random dynamics or drift seemed to have a more important role in structuring prokaryotic communities than picoeukaryotic counterparts. CONCLUSIONS: The differential action of ecological mechanisms seems to cause contrasting biogeography, in the tropical and subtropical ocean, among the smallest surface plankton, prokaryotes and picoeukaryotes. This suggests that the idiosyncrasy of the main constituents of the ocean microbiota should be considered in order to understand its current and future configuration, which is especially relevant in a context of global change, where the reaction of surface ocean plankton to temperature increase is still unclear. Video Abstract

Observation of 1D Behavior in Si Nanowires: Toward High-Performance TFETs

This article provides experimental evidence of one-dimensional behavior of silicon (Si) nanowires (NWs) at low-temperature through both transfer (Id−VG) and capaci- tance−voltage characteristics. For the first time, operation of Si NWs in the quantum capacitance limit (QCL) is experimentally demonstrated and quantitatively analyzed. This is of relevance since working in the QCL may allow, e.g., tunneling field-effect transistors (TFETs) to achieve higher on-state currents (Ion) and larger on-/off-state current ratios (Ion/Ioff), thus addressing one of the most severe limitations of TFETs. Comparison of the experimental data with simulations finds excellent agreement using a simple capacitor model

Three versus six months of adjuvant doublet chemotherapy for patients with colorectal cancer: a multi-country cost-effectiveness and budget impact analysis

Introduction: The Short Course Oncology Treatment (SCOT) trial demonstrated non-inferiority, less toxicity and cost-effectiveness from a UK perspective of 3 versus 6 months of oxaliplatin-based chemotherapy for patients with colorectal cancer. This study assessed the cost-effectiveness of shorter treatment, and the budget impact of implementing trial findings from the perspective of all countries that recruited to SCOT: Australia, Denmark, New Zealand, Spain, Sweden and the UK. Methods: Individual cost-utility analyses (CUAs) were performed from the perspective of each country. Resource, quality of life and survival estimates from the SCOT trial (n=6,065) were used. Probabilistic sensitivity analysis and sub-group analyses were undertaken. Using undiscounted costs from these CUAs, the impact on the country specific healthcare budgets of implementing the SCOT trial findings was calculated over a 5-year period. United States dollars were the currency used, with 2019 as base year. One-way and scenario sensitivity analysis addressed uncertainty within the budget impact analysis. Results: Three months of treatment was cost-saving and cost-effective compared to 6 months from the perspective of all countries. The incremental net monetary benefit per patient ranged from $8,972 (Spain) to$13,884 (Denmark). The healthcare budget impact over 5 years for the base case scenario ranged from $3.6 million (New Zealand) to$61.4 million (UK) and totalled over $150 million across all countries. Discussion: This study has widened the transferability of results from the SCOT trial, showing shorter treatment is cost-effective from a multi-country perspective. The vast savings from implementation could fully justify the investment in conducting the SCOT trial

Pulmonary neuroendocrine (carcinoid) tumors: European Neuroendocrine Tumor Society expert consensus and recommendations for best practice for typical and atypical pulmonary carcinoids

This is an expert consensus from the European Neuroendocrine Tumor Society recommending best practice for the management of pulmonary neuroendocrine tumors including typical and atypical carcinoids. It emphasizes the latest discussion on nomenclature, advances and utility of new diagnostic techniques as well as the limited evidence and difficulties in determining the optimal therapeutic strateg

Global beta diversity patterns of microbial communities in the surface and deep ocean

This is contribution 1112 from AZTI Marine Research Division.-- 14 pages, 4 figures, 3 tables, supporting information https://doi.org/10.1111/geb.13572.-- Data Availability Statement: DNA sequences for surface prokaryotes are publicly available at the European Nucleotide Archive [http://www.ebi.ac.uk/ena; accession number PRJEB25224 (16S rRNA genes)], for deep prokaryotes at the National Center for Biotechnology Information (NCBI) Sequence Read Archive (http://www.ncbi.nlm.nih.gov/Traces/sra) under accession ID SRP031469, and for surface and deep picoeukaryotes at the European Nucleotide Archive with accession number PRJEB23771 (http://www.ebi.ac.uk/ena). Environmental data used in this study are available from https://github.com/ramalok/malaspina.surface.metabacoding, Giner et al. (2020) and Salazar et al. (2015). The code to analyze the data and produce the figures of this research is available from the corresponding author upon request.-- This is the pre-peer reviewed version of the following article: Ernesto Villarino, James R. Watson, Guillem Chust ,A. John Woodill, Benjamin Klempay, Bror Jonsson, Josep M. Gasol, Ramiro Logares, Ramon Massana, Caterina R. Giner, Guillem Salazar, X. Anton Alvarez-Salgado, Teresa S. Catala, Carlos M. Duarte, Susana Agusti, Francisco Mauro, Xabier Irigoien, Andrew D. Barton; Global beta diversity patterns of microbial communities in the surface and deep ocean; Global Ecology and Biogeography 31(11): 2323-2336 (2022), which has been published in final form at https://doi.org/10.1111/geb.13572. This article may be used for non-commercial purposes in accordance with Wiley Terms and Conditions for Use of Self-Archived VersionsAim: Dispersal and environmental gradients shape marine microbial communities, yet the relative importance of these factors across taxa with distinct sizes and dispersal capacity in different ocean layers is unknown. Here, we report a comparative analysis of surface and deep ocean microbial beta diversity and examine how these patterns are tied to oceanic distance and environmental gradients. Location: Tropical and subtropical oceans (30°N–40°S). Time period: 2010-2011. Major taxa studied: Prokaryotes and picoeukaryotes (eukaryotes between 0.2 and 3 μm). Methods: Beta diversity was calculated from metabarcoding data on prokaryotic and picoeukaryotic microbes collected during the Malaspina expedition across the tropical and subtropical oceans. Mantel correlations were used to determine the relative contribution of environment and oceanic distance driving community beta diversity. Results: Mean community similarity across all sites for prokaryotes was 38.9% in the surface and 51.4% in the deep ocean, compared to mean similarity of 25.8 and 12.1% in the surface and deep ocean, respectively, for picoeukaryotes. Higher dispersal rates and smaller body sizes of prokaryotes relative to picoeukaryotes likely contributed to the significantly higher community similarity for prokaryotes compared with picoeukaryotes. The ecological mechanisms determining the biogeography of microbes varied across depth. In the surface ocean, the environmental differences in space were a more important factor driving microbial distribution compared with the oceanic distance, defined as the shortest path between two sites avoiding land. In the deep ocean, picoeukaryote communities were slightly more structured by the oceanic distance, while prokaryotes were shaped by the combined action of oceanic distance and environmental filtering. Main conclusions: Horizontal gradients in microbial community assembly differed across ocean depths, as did mechanisms shaping them. In the deep ocean, the oceanic distance and environment played significant roles driving microbial spatial distribution, while in the surface the influence of the environment was stronger than oceanic distanceData collection was funded by the Malaspina 2010 Circumnavigation Expedition project (Consolider-Ingenio 2010, CSD2008-00077) and cofunded by the Basque Government (Department Deputy of Agriculture, Fishing and Food Policy). We acknowledge funding from the Spanish Government through the “Severo Ochoa Center of Excelence” accreditation CEX2019-000928-S. [...] We also acknowledge H2020 Mission Atlantic project (Ref. Grant Agreement Number 862428). EV was supported by an international exchange post-doc scholarship to Scripps Institution of Oceanography and Oregon State University granted by the Education Department of the Basque GovernmentPeer reviewe