Co-designed FreeRTOS deployed on FPGA

Most embedded systems are bound to real-time constraints. Two of the critical metrics presented in these systems are determinism and latency. Due to growing in complexity of embedded applications, real time operating systems (RTOS) are needed, not only to hide the increasingly complex hardware, but also to provide services to the system’s running tasks. Unfortunately, this new layer on an embedded system puts more pressure on the aforementioned metrics. One of the ways to cope with this problem is to offload RTOS run-time services to the hardware layer. This paper presents a hybrid hardware/software implementation of this technique upon the well known FreeRTOS, improving system’s latency and predictability, by migrating critical runtime services to hardware. The developed hardware accelerators were synthesized on a field-programmable gate array (FPGA), exploiting the point-to-point bus Fast Simplex Link (FSL) to interconnect to the Xilinx’s Microbaze soft-core processor.This work has been supported by FCT - Foundation for Science and Technology within the Project Scope: PEst-OE/EEI/UI0319/2014

Integrated water management in the Seven Cities basin

Copyright © 2008 Springer.The Sete Cidades lake in the Azores, is located in a volcanic crater. Increased frequency of logging (380 hectares of production forests) and the use of fertilizers on pastures and forages (450 hectares) that sustain 750 cows, provide direct employment to 67 farmers and induce employment to more 50 actives, but also increases the eutrophycation and sedimentation of the lake. To address the issue an integrated model generates efficient land use scenarios for different degrees of phosphorus emissions with related effects in the water quality. The model is used to obtain various indicators for each scenario that feed a multi-objective program able to find the dominant solutions. The final solution is chosen by the politicians: 600 cows that produce 3.0 millions of milk, provide direct employment to 55 farmers and induce employment to more 41 actives. This, jointly with a partial stream deviation, allows a reduction of 63% of the phosphorus load to the lake. Compensatory measures pay the farmers their losses and compensate the community for the lost employment

Polyoxometalate/laccase-mediated oxidative polymerization of catechol for textile dyeing

The synergistic effect between polyoxometalates (POMs), namely K5[SiW11VVO40]·11H2O and H5[PMo10 VV2O40]·13H2O and laccase from ascomycete Myceliophthora thermophila has been employed for the first time in oxidative polymerization of catechol. Such a laccase-mediator system allowed the formation of a relatively high molecular weight polycatechol as confirmed by size exclusion chromatography and electrospray ionization mass spectrometry (ESI-MS) (3990 Da when using K5[SiW11VVO40]·11H2O and 3600 Da with H5[PMo10VV 2O40]·13H2O). The synthesized polymers were applied as dyes for the dyeing of flax fabrics. The color intensity of flax fabrics colored with polymer solutions was evaluated by diffuse reflectance spectrophotometry via k/s measurements (+10% of fixation ratio). A new synthetic process allowed a dyeing polymer, provided upon flax coloration, better color fixation and color resistance when compared to that obtained by conventional synthesis with laccase solely or with addition of organic mediator (1-hydroxybenzotriazole)

Quantitation overcoming Matrix effects of Lipophilic toxins in Mytilus galloprovincialis by liquid chromatography-full scan high resolution mass spectrometry analysis (LC-HR-MS)

The analysis of marine lipophilic toxins in shellfish products still represents a challenging task due to the complexity and diversity of the sample matrix. Liquid chromatography coupled with mass spectrometry (LC-MS) is the technique of choice for accurate quantitative measurements in complex samples. By combining unambiguous identification with the high selectivity of tandem MS, it provides the required high sensitivity and specificity. However, LC-MS is prone to matrix effects (ME) that need to be evaluated during the development and validation of methods. Furthermore, the large sample-to-sample variability, even between samples of the same species and geographic origin, needs a procedure to evaluate and control ME continuously. Here, we analyzed the toxins okadaic acid (OA), dinophysistoxins (DTX-1 and DTX-2), pectenotoxin (PTX-2), yessotoxin (YTX) and azaspiracid-1 (AZA-1). Samples were mussels (Mytilus galloprovincialis), both fresh and processed, and a toxin-free mussel reference material. We developed an accurate mass-extracted ion chromatogram (AM-XIC) based quantitation method using an Orbitrap instrument, evaluated the ME for different types and extracts of mussel samples, characterized the main compounds co-eluting with the targeted molecules and quantified toxins in samples by following a standard addition method (SAM). An AM-XIC based quantitation of lipophilic toxins in mussel samples using high resolution and accuracy full scan profiles (LC-HR-MS) is a good alternative to multi reaction monitoring (MRM) for instruments with HR capabilities. ME depend on the starting sample matrix and the sample preparation. ME are particularly strong for OA and related toxins, showing values below 50% for fresh mussel samples. Results for other toxins (AZA-1, YTX and PTX-2) are between 75% and 110%. ME in unknown matrices can be evaluated by comparing their full scan LC-HR-MS profiles with those of known samples with known ME. ME can be corrected by following SAM with AM-XIC quantitation if necessary.info:eu-repo/semantics/publishedVersio

Quinoline- and benzoselenazole-derived unsymmetrical squaraine cyanine dyes: design, synthesis, photophysicochemical features and light-triggerable antiproliferative effects against breast cancer cell lines

Photodynamic therapy is an innovative treatment approach broadly directed towards oncological diseases. Its applicability and efficiency are closely related to the interaction of three main components, namely a photosensitizer, light and molecular triplet oxygen, which should drive cell death. Recently, several studies have demonstrated that squaraine cyanine dyes have a set of photophysical and photochemical properties that have made of these compounds’ potential photosensitizers for this therapeutic modality. In the present research work, we describe the synthesis and characterization of four quinoline- and benzoselenazole-derived unsymmetrical squaraine cyanine dyes. Except for the precursor of aminosquaraine dyes, i.e., O-methylated derivative, all dyes were evaluated for their behavior and absorption capacity in different organic and aqueous solvents, their ability to form singlet oxygen, their light-stability, and in vitro phototherapeutic effects against two human breast cancer cell cultures (BT-474 and MCF-7). Regardless of the nature of the used solvents, the synthesized dyes showed intense absorption in the red and near-infrared spectral regions, despite the formation of aggregates in aqueous media. Dyes showed high light-stability against light exposure. Despite the low ability to produce singlet oxygen, aminosquaraine dyes demonstrated worthy in vitro phototherapeutic activity.This research was funded by the European Investment Funds by FEDER/COMPETE/POCI under projects POCI-01-0145-FEDER-006958 (CITAB) and POCI-01-0145-FEDER-007491 (CICS-UBI) and Funds by FCT—Portuguese Foundation for Science and technology, under the projects UIDB/ 04033/2020 (CITAB) and UIDB/ 00616/2020 (CQ-VR). This work was also supported by funds from the Health Sciences Research Center (CICS-UBI) through National Funds by FCT—Foundation for Science and Technology (UID/Multi/00709/2019).The research at iBB was supported by Project UID/NAN/50024/2019 and M-ERA-NET/0002/2015 from FCT. E.L. was supported by the FCT PhD grant SFRH/BD/147645/2019.info:eu-repo/semantics/publishedVersio

Red and near-infrared absorbing dicyanomethylene squaraine cyanine dyes: photophysicochemical properties and anti-tumor photosensitizing effects

Photodynamic therapy is a medical modality developed for the treatment of several diseases of oncological and non-oncological etiology that requires the presence of a photosensitizer, light and molecular oxygen, which combined will trigger physicochemical reactions responsible for reactive oxygen species production. Given the scarcity of photosensitizers that exhibit desirable characteristics for its potential application in this therapeutic strategy, the main aims of this work were the study of the photophysical and photochemical properties and the photobiological activity of several dicyanomethylene squaraine cyanine dyes. Thus, herein, the study of their aggregation character, photobleaching and singlet oxygen production ability, and the further application of the previously synthesized dyes in Caco-2 and HepG2 cancer cell lines, to evaluate their phototherapeutic effects, are described. Dicyanomethylene squaraine dyes exhibited moderate light-stability and, despite the low singlet oxygen quantum yields, were a core of dyes that exhibited relevant in vitro photodynamic activity, as there was an evident increase in the toxicity of some of the tested dyes exclusive to radiation treatments.This research was funded by the European Investment Funds by FEDER/COMPETE/POCI under projects POCI-01-0145-FEDER-006958 (CITAB) and POCI-01-0145-FEDER-007491 (CICS-UBI) and Funds by FCT – Portuguese Foundation for Science and technology, under the projects UIDB/04033/2019 (CITAB) and UIDB/00616/2020 (CQ-VR). This work was also supported by funds from the Health Sciences Research Center (CICS-UBI) through National Funds by FCT—Foundation for Science and Technology (UID/Multi/00709/2019). The research at CQFM was supported by Project UID/NAN/50024/2019 and M-ERA-NET/0002/2015 from FCT. E. L. was supported by the FCT PhD grant SFRH/BD/147645/2019

Expression of sugarcane genes induced by inoculation with Gluconacetobacter diazotrophicus and Herbaspirillum rubrisubalbicans

Several Brazilian sugarcane varieties have the ability to grow with little addition of inorganic nitrogen fertilizers, showing high contributions of Biological Nitrogen Fixation (BNF). A particular type of nitrogen-fixing association has been described in this crop, where endophytic diazotrophs such as Gluconacetobacter diazotrophicus and Herbaspirillum spp. colonize plant tissues without causing disease symptoms. In order to gain insight into the role played by the sugarcane in the interaction between this plant and endophytic diazotrophs, we investigated gene expression profiles of sugarcane plants colonized by G. diazotrophicus and H. rubrisubalbicans by searching the sugarcane expressed sequence tag SUCEST Database (http://sucest.lad.ic.unicamp.br/en/). We produced an inventory of sugarcane genes, candidates for exclusive or preferential expression during the nitrogen-fixing association. This data suggests that the host plant might be actively involved in the establishment of the interaction with G. diazotrophicus and H. rubrisubalbicans.Diversos genótipos brasileiros de cana-de-açúcar são capazes de crescer com baixa adição de adubos nitrogenados, obtendo elevadas contribuições da Fixação Biológica de Nitrogênio (FBN). Um tipo especial de associação com bactérias fixadoras de nitrogênio foi descrito em cana-de-açúcar, onde as bactérias endofíticas, como Gluconacetobacter diazotrophicus e Herbaspirillum spp., colonizam o interior dos tecidos vegetais, sem causar sintomas de doença. Com o objetivo de tentar entender o papel da cana-de-açúcar nesse tipo de associação, nós investigamos os perfis de expressão gênica de plantas colonizadas pelos diazotróficos endofíticos, usando o banco de dados do SUCEST. Um catálogo com os genes de cana-de-açúcar que são candidatos a se expressar exclusivamente ou preferencialmente durante a associação foi gerado. Esses dados preliminares sugerem que a cana-de-açúcar deve ter uma participação ativa na interação, respondendo a diversos processos metabólicos durante a associação.199206Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES

Optical lithography patterning of SiO2 layers for interface passivation of thin film solar cells

Ultrathin Cu(In,Ga)Se2 solar cells are a promising way to reduce costs and to increase the electrical performance of thin film solar cells. In this work, we develop an optical lithography process that can produce sub-micrometer contacts in a SiO2 passivation layer at the CIGS rear contact. Furthermore, an optimization of the patterning dimensions reveals constrains over the features sizes. High passivation areas of the rear contact are needed to passivate the CIGS interface so that high performing solar cells can be obtained. However, these dimensions should not be achieved by using long distances between the contacts as they lead to poor electrical performance due to poor carrier extraction. This study expands the choice of passivation materials already known for ultrathin solar cells and its fabrication techniques.publishe

The influence of Amazonian and Atlantic flora in the vegetation of cerrado sensu stricto

A contribuição das floras Atlântica e Amazônica foi analisada em doze localidades no bioma do cerrado. Um total de 290 espécies de arbustos e árvores foram registradas nas localidades de cerrado. Deste total 41,1% ocorreram apenas no cerrado, sendo provavelmente endêmicas e 58,9% ocorreram nas florestas Atlântica e Amazônica. Para as espécies não endêmicas, a contribuição da floresta Atlântica foi maior (44,8%) do que a da floresta Amazônica (1,4%), com as 12,7% de espécies restantes ocorrendo nos dois biomas florestais. A proporção de espécies com centro de distribuição na floresta Atlântica e Amazônica mostraram um pequeno decréscimo em direção ao centro do bioma do cerrado. Para o primeiro, a distância explicou apenas 30% da variação na proporção de espécies, por um modelo polinomial ajustado aos dados e, para o último, um modelo linear explicou 78% da variação. A proporção de espécies com centro de distribuição na floresta Atlântica mostrou um pequeno aumento com a altitude, mas um modelo polinomial explicou apenas 18% dessa variação. Inversamente, ocorreu um decréscimo linear na proporção de espécies com a altitude para aquelas com centro de distribuição na floresta Amazônica; o modelo explicou 31% da variação. As diferenças na contribuição das floras da floresta Atlântica e Amazônica para a fisionomia de cerrado é discutida com relação às mudanças climáticas durante o Quaternário e diferenças na tolerância entre espécies às queimadas e baixas temperaturas no bioma do Cerrado.The contribution of Amazonian and Atlantic floras was analyzed in twelve localities in the cerrado biome. A total of 290 tree and shrub species were recorded in those localities. Of these, 41.1% occurred only in cerrado and are probably endemic, and 58.9% also occurred in Atlantic and/or Amazonian forest. For non-endemic species the contribution of Atlantic forest was greater (44.8%) than Amazonian ones (1.4%), with the remaining 12.7% species found in both forest biomes. The proportions of species with centers of distribution in Atlantic and Amazonian forest showed a slight decrease toward the center of cerrado biome. For the former, the distance explained only 30% of variation in proportions by a polynomial model fit to the data, and for the latter a significant linear model explained 78% of variations. The flora of Amazon forest and Atlantic forest showed a segregation with altitude. The proportions of species with centers of distribution in the Atlantic forest showed a slight increase with altitude, but a polynomial model explained only 18% of this variation. Inversely, there was a linear relationship between the proportions of species with centers of distribution in Amazonian forest and altitude that explained 31% of variation. The differences in contribution patterns of the Atlantic and Amazonian forest flora to the cerrado physiognomy is discussed with respect to climatic changes during the Quaternary and to differences in plant species tolerance to fire and low temperature in the cerrado biome