280 research outputs found
MĂ©todos para a climatização de bananas âprata-anĂŁâ produzidas na AmazĂŽnia Setentrional brasileira.
O objetivo, neste trabalho, foi avaliar o uso da climatização para a uniformização de bananas 'Prata-AnĂŁ' produzidas em Boa Vista-RR. ApĂłs colhidos, os frutos foram selecionados no formato de buquĂȘs, sanitizados, climatizados por abafamento com lona plĂĄstica ou por imersĂŁo em solução de EthrelÂź, embalados com filme de polietileno de baixa densidade e armazenados por quatro perĂodos de tempo (0; 10;20 e 30 dias) a 12 ± 1 ÂșC e 93 ± 2% de UR. ApĂłs cada perĂodo de armazenamento refrigerado (AR) os frutos foram submetidos ao armazenamento em condiçÔes ambiente (22 ± 1 ÂșC e 75 ± 3% UR), retirados das embalagens plĂĄsticas e sendo analisados apĂłs 1; 2; 3 e 4 dias. As seguintes anĂĄlises foram realizadas: perda de massa fresca, coloração da casca, produção de etileno e CO2, atividade das enzimas pectinametilesterase e poligalacturonase, acidez titulĂĄvel (AT), pectina total e solĂșvel, amido e sĂłlidos solĂșveis (SS). NĂŁo houve diferenças significativas entre os mĂ©todos de climatização, porĂ©m verificou-se que, quanto maior o perĂodo de AR e de condicionamento, menor foi o perĂodo de conservação das bananas 'Prata-AnĂŁ'. Ficou evidenciado, tambĂ©m, que a climatização, independentemente do mĂ©todo utilizado, deve ser realizada em atĂ© 20 dias apĂłs a colheita, nas condiçÔes de AR aqui testadas. Nessas condiçÔes, foi possĂvel manter a qualidade sensorial das bananas por atĂ© 3 dias apĂłs a retirada dos frutos do armazenamento refrigerado
Ceramic matrix composite turbine engine vane
A vane has an airfoil shell and a spar within the shell. The vane has an outboard shroud at an outboard end of the shell and an inboard platform at an inboard end of the shell. The spar has a first chamber essentially along the suction side and a second chamber along the pressure side opposite the first chamber
Real-time monitoring of metabolic function in liver-on-chip microdevices tracks the dynamics of mitochondrial dysfunction
Microfluidic organ-on-a-chip technology aims to replace animal toxicity testing, but thus far has demonstrated few advantages over traditional methods. Mitochondrial dysfunction plays a critical role in the development of chemical and pharmaceutical toxicity, as well as pluripotency and disease processes. However, current methods to evaluate mitochondrial activity still rely on end-point assays, resulting in limited kinetic and prognostic information. Here, we present a liver-on-chip device capable of maintaining human tissue for over a month in vitro under physiological conditions. Mitochondrial respiration was monitored in real time using two-frequency phase modulation of tissue-embedded phosphorescent microprobes. A computer-controlled microfluidic switchboard allowed contiguous electrochemical measurements of glucose and lactate, providing real-time analysis of minute shifts from oxidative phosphorylation to anaerobic glycolysis, an early indication of mitochondrial stress. We quantify the dynamics of cellular adaptation to mitochondrial damage and the resulting redistribution of ATP production during rotenone-induced mitochondrial dysfunction and troglitazone (Rezulin)-induced mitochondrial stress. We show troglitazone shifts metabolic fluxes at concentrations previously regarded as safe, suggesting a mechanism for its observed idiosyncratic effect. Our microfluidic platform reveals the dynamics and strategies of cellular adaptation to mitochondrial damage, a unique advantage of organ-on-chip technology
Colored Motifs Reveal Computational Building Blocks in the C. elegans Brain
Background: Complex networks can often be decomposed into less complex sub-networks whose structures can give hints about the functional
organization of the network as a whole. However, these structural
motifs can only tell one part of the functional story because in this
analysis each node and edge is treated on an equal footing. In real
networks, two motifs that are topologically identical but whose nodes
perform very different functions will play very different roles in the
network.
Methodology/Principal Findings: Here, we combine structural information
derived from the topology of the neuronal network of the nematode C.
elegans with information about the biological function of these nodes,
thus coloring nodes by function. We discover that particular
colorations of motifs are significantly more abundant in the worm brain
than expected by chance, and have particular computational functions
that emphasize the feed-forward structure of information processing in
the network, while evading feedback loops. Interneurons are strongly
over-represented among the common motifs, supporting the notion that
these motifs process and transduce the information from the sensor
neurons towards the muscles. Some of the most common motifs identified
in the search for significant colored motifs play a crucial role in the
system of neurons controlling the worm's locomotion.
Conclusions/Significance: The analysis of complex networks in terms of
colored motifs combines two independent data sets to generate insight
about these networks that cannot be obtained with either data set
alone. The method is general and should allow a decomposition of any
complex networks into its functional (rather than topological) motifs
as long as both wiring and functional information is available
Differential expression analysis with global network adjustment
<p>Background: Large-scale chromosomal deletions or other non-specific perturbations of the transcriptome can alter the expression of hundreds or thousands of genes, and it is of biological interest to understand which genes are most profoundly affected. We present a method for predicting a geneâs expression as a function of other genes thereby accounting for the effect of transcriptional regulation that confounds the identification of genes differentially expressed relative to a regulatory network. The challenge in constructing such models is that the number of possible regulator transcripts within a global network is on the order of thousands, and the number of biological samples is typically on the order of 10. Nevertheless, there are large gene expression databases that can be used to construct networks that could be helpful in modeling transcriptional regulation in smaller experiments.</p>
<p>Results: We demonstrate a type of penalized regression model that can be estimated from large gene expression databases, and then applied to smaller experiments. The ridge parameter is selected by minimizing the cross-validation error of the predictions in the independent out-sample. This tends to increase the model stability and leads to a much greater degree of parameter shrinkage, but the resulting biased estimation is mitigated by a second round of regression. Nevertheless, the proposed computationally efficient âover-shrinkageâ method outperforms previously used LASSO-based techniques. In two independent datasets, we find that the median proportion of explained variability in expression is approximately 25%, and this results in a substantial increase in the signal-to-noise ratio allowing more powerful inferences on differential gene expression leading to biologically intuitive findings. We also show that a large proportion of gene dependencies are conditional on the biological state, which would be impossible with standard differential expression methods.</p>
<p>Conclusions: By adjusting for the effects of the global network on individual genes, both the sensitivity and reliability of differential expression measures are greatly improved.</p>
The TM6SF2 E167K genetic variant induces lipid biosynthesis and reduces apolipoprotein B secretion in human hepatic 3D spheroids
There is a high unmet need for developing treatments for nonalcoholic fatty liver disease (NAFLD), for which there are no approved drugs today. Here, we used a human in vitro disease model to understand mechanisms linked to genetic risk variants associated with NAFLD. The model is based on 3D spheroids from primary human hepatocytes from five different donors. Across these donors, we observed highly reproducible differences in the extent of steatosis induction, demonstrating that inter-donor variability is reflected in the in vitro model. Importantly, our data indicates that the genetic variant TM6SF2 E167K, previously associated with increased risk for NAFLD, induces increased hepatocyte fat content by reducing APOB particle secretion. Finally, differences in gene expression pathways involved in cholesterol, fatty acid and glucose metabolism between wild type and TM6SF2 E167K mutation carriers (N = 125) were confirmed in the in vitro model. Our data suggest that the 3D in vitro spheroids can be used to investigate the mechanisms underlying the association of human genetic variants associated with NAFLD. This model may also be suitable to discover new treatments against NAFLD
Network 'small-world-ness': a quantitative method for determining canonical network equivalence
Background: Many technological, biological, social, and information networks fall into the broad class of 'small-world' networks: they have tightly interconnected clusters of nodes, and a shortest mean path length that is similar to a matched random graph (same number of nodes and edges). This semi-quantitative definition leads to a categorical distinction ('small/not-small') rather than a quantitative, continuous grading of networks, and can lead to uncertainty about a network's small-world status. Moreover, systems described by small-world networks are often studied using an equivalent canonical network model-the Watts-Strogatz (WS) model. However, the process of establishing an equivalent WS model is imprecise and there is a pressing need to discover ways in which this equivalence may be quantified.
Methodology/Principal Findings: We defined a precise measure of 'small-world-ness' S based on the trade off between high local clustering and short path length. A network is now deemed a 'small-world' if S. 1-an assertion which may be tested statistically. We then examined the behavior of S on a large data-set of real-world systems. We found that all these systems were linked by a linear relationship between their S values and the network size n. Moreover, we show a method for assigning a unique Watts-Strogatz (WS) model to any real-world network, and show analytically that the WS models associated with our sample of networks also show linearity between S and n. Linearity between S and n is not, however, inevitable, and neither is S maximal for an arbitrary network of given size. Linearity may, however, be explained by a common limiting growth process.
Conclusions/Significance: We have shown how the notion of a small-world network may be quantified. Several key properties of the metric are described and the use of WS canonical models is placed on a more secure footing
Differential Forms on Log Canonical Spaces
The present paper is concerned with differential forms on log canonical
varieties. It is shown that any p-form defined on the smooth locus of a variety
with canonical or klt singularities extends regularly to any resolution of
singularities. In fact, a much more general theorem for log canonical pairs is
established. The proof relies on vanishing theorems for log canonical varieties
and on methods of the minimal model program. In addition, a theory of
differential forms on dlt pairs is developed. It is shown that many of the
fundamental theorems and techniques known for sheaves of logarithmic
differentials on smooth varieties also hold in the dlt setting.
Immediate applications include the existence of a pull-back map for reflexive
differentials, generalisations of Bogomolov-Sommese type vanishing results, and
a positive answer to the Lipman-Zariski conjecture for klt spaces.Comment: 72 pages, 6 figures. A shortened version of this paper has appeared
in Publications math\'ematiques de l'IH\'ES. The final publication is
available at http://www.springerlink.co
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