150 research outputs found
Collapse of the N=28 shell closure in Si
The energies of the excited states in very neutron-rich Si and
P have been measured using in-beam -ray spectroscopy from the
fragmentation of secondary beams of S at 39 A.MeV. The low 2
energy of Si, 770(19) keV, together with the level schemes of
P provide evidence for the disappearance of the Z=14 and N=28
spherical shell closures, which is ascribed mainly to the action of
proton-neutron tensor forces. New shell model calculations indicate that
Si is best described as a well deformed oblate rotor.Comment: 4 pages, 3 figures, accepted for publication in Phys. Rev. let
Absorbing photonic crystals for thin film photovoltaics
The absorption of thin hydrogenated amorphous silicon layers can be
efficiently enhanced through a controlled periodic patterning. Light is trapped
through coupling with photonic Bloch modes of the periodic structures, which
act as an absorbing planar photonic crystal. We theoretically demonstrate this
absorption enhancement through one or two dimensional patterning, and show the
experimental feasibility through large area holographic patterning. Numerical
simulations show over 50% absorption enhancement over the part of the solar
spectrum comprised between 380 and 750nm. It is experimentally confirmed by
optical measurements performed on planar photonic crystals fabricated by laser
holography and reactive ion etching.Comment: 6 pages. SPIE Photonics Europe pape
Nucleic Acids Res
In plants, the voltage-dependent anion-selective channel (VDAC) is a major component of a pathway involved in transfer RNA (tRNA) translocation through the mitochondrial outer membrane. However, the way in which VDAC proteins interact with tRNAs is still unknown. Potato mitochondria contain two major mitochondrial VDAC proteins, VDAC34 and VDAC36. These two proteins, composed of a N-terminal α-helix and of 19 ÎČ-strands forming a ÎČ-barrel structure, share 75% sequence identity. Here, using both northwestern and gel shift experiments, we report that these two proteins interact differentially with nucleic acids. VDAC34 binds more efficiently with tRNAs or other nucleic acids than VDAC36. To further identify specific features and critical amino acids required for tRNA binding, 21 VDAC34 mutants were constructed and analyzed by northwestern. This allowed us to show that the ÎČ-barrel structure of VDAC34 and the first 50 amino acids that contain the α-helix are essential for RNA binding. Altogether the work shows that during evolution, plant mitochondrial VDAC proteins have diverged so as to interact differentially with nucleic acids, and this may reflect their involvement in various specialized biological functions
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High-speed optical mapping of heart and brain voltage activities in zebrafish larvae exposed to environmental contaminants
Data availability: Data will be made available on request.Supplementary data are available online at https://www.sciencedirect.com/science/article/pii/S235218642300192X?via%3Dihub#appSB .Copyright © 2023 The Author(s). Environmental contaminants represent a poorly understood ecotoxicological and health risk. Here, we advanced a high-speed optical mapping (OM) technique to non-invasively track voltage dynamics in living zebrafish larvaeâs heart and brain and investigate the effects of selected pesticides.
OM allowed high resolution (
17x) and fast acquisition (100 to 200 frames/s) of the voltage signal generated in the heart and brain after immersion of the zebrafish larvae in a voltage-sensitive dye. First, we used varying temperatures (20 °C to 25 °C) to test the adequacy of OM in capturing cardiac and brain voltage changes. Then, we tested the effects of glyphosate or a selected pesticide cocktail (2 to 120 h post-fertilization), accounting for their environmental thresholds and mimicking high-level exposure. Glyphosate (0.1 and 1000
g/L) and the pesticide cocktail (0.1 and 10
g/L) did not alter cardiac activity, except for a trend increase in heart rate variability at high glyphosate dose. Fourier transform (FT) analyses indicated that glyphosate reduced the abundance of low-amplitude voltage activities in the brain at the target low-frequency range of 0.2â15 Hz. The anatomical fragmentation of the brain into four regions, right and left diencephalon (RD and LD) and right and left optic tectum (ROT and LOT), confirmed the impact of glyphosate on the larvae brain and revealed a specific adaptation to the pesticide cocktail in the RD and ROT regions.
In summary, OM captured heart and brain voltage changes in zebrafish larvae, with discrete patterns of brain depolarization in the presence of specific water contaminants. Here we discuss the relevance of these findings to ecotoxicology and exposome research.This work was supported by ANR-Hepatobrain and Epidimicmac ANSES to NM, and âSoutien Ă la Recherche 2021â of the University of Montpellier and Fondation pour la Recherche sur le Cerveau, France: Espoir en tĂȘte 2022/23 to AGT. Partially funded by OptoFish ANSES, ANR-EpiCatcher, ANR/Era-Net Neu-Vasc to NM and the Fondation pour la Recherche MĂ©dicale, France (FRM, grant DPC2017 to M.E.M)
The \u3cem\u3eChlamydomonas\u3c/em\u3e Genome Reveals the Evolution of Key Animal and Plant Functions
Chlamydomonas reinhardtii is a unicellular green alga whose lineage diverged from land plants over 1 billion years ago. It is a model system for studying chloroplast-based photosynthesis, as well as the structure, assembly, and function of eukaryotic flagella (cilia), which were inherited from the common ancestor of plants and animals, but lost in land plants. We sequenced the âŒ120-megabase nuclear genome of Chlamydomonas and performed comparative phylogenomic analyses, identifying genes encoding uncharacterized proteins that are likely associated with the function and biogenesis of chloroplasts or eukaryotic flagella. Analyses of the Chlamydomonas genome advance our understanding of the ancestral eukaryotic cell, reveal previously unknown genes associated with photosynthetic and flagellar functions, and establish links between ciliopathy and the composition and function of flagella
Structural and Content Diversity of Mitochondrial Genome in Beet: A Comparative Genomic Analysis
Despite their monophyletic origin, mitochondrial (mt) genomes of plants and animals have developed contrasted evolutionary paths over time. Animal mt genomes are generally small, compact, and exhibit high mutation rates, whereas plant mt genomes exhibit low mutation rates, little compactness, larger sizes, and highly rearranged structures. We present the (nearly) whole sequences of five new mt genomes in the Beta genus: four from Beta vulgaris and one from B. macrocarpa, a sister species belonging to the same Beta section. We pooled our results with two previously sequenced genomes of B. vulgaris and studied genome diversity at the species level with an emphasis on cytoplasmic male-sterilizing (CMS) genomes. We showed that, contrary to what was previously assumed, all three CMS genomes belong to a single sterile lineage. In addition, the CMSs seem to have undergone an acceleration of the rates of substitution and rearrangement. This study suggests that male sterility emergence might have been favored by faster rates of evolution, unless CMS itself caused faster evolution
In-beam spectroscopic studies of S nucleus
The structure of the S nucleus has been studied at GANIL through the
one proton knock-out reaction from a Cl secondary beam at 42
AMeV. The rays following the de-excitation of S were
detected in flight using the 70 BaF detectors of the Ch\^{a}teau de
Cristal array. An exhaustive -coincidence analysis allowed an
unambiguous construction of the level scheme up to an excitation energy of 3301
keV. The existence of the spherical 2 state is confirmed and three new
-ray transitions connecting the prolate deformed 2 level were
observed. Comparison of the experimental results to shell model calculations
further supports a prolate and spherical shape coexistence with a large mixing
of states built on the ground state band in S.Comment: 6 pages, 5 figures, accepted for publication in Physical Review
The nuclear and organellar tRNA-derived RNA fragment population in Arabidopsis thaliana is highly dynamic
In the expanding repertoire of small noncoding RNAs (ncRNAs), tRNA-derived RNA fragments (tRFs) have been identified in all domains of life. Their existence in plants has been already proven but no detailed analysis has been performed. Here, short tRFs of 19-26 nucleotides were retrieved from Arabidopsis thaliana small RNA libraries obtained from various tissues, plants submitted to abiotic stress or fractions immunoprecipitated with ARGONAUTE 1 (AGO1). Large differences in the tRF populations of each extract were observed. Depending on the tRNA, either tRF-5D (due to a cleavage in the D region) or tRF-3T (via a cleavage in the T region) were found and hot spots of tRNA cleavages have been identified. Interestingly, up to 25% of the tRFs originate from plastid tRNAs and we provide evidence that mitochondrial tRNAs can also be a source of tRFs. Very specific tRF-5D deriving not only from nucleus-encoded but also from plastid-encoded tRNAs are strongly enriched in AGO1 immunoprecipitates. We demonstrate that the organellar tRFs are not found within chloroplasts or mitochondria but rather accumulate outside the organelles. These observations suggest that some organellar tRFs could play regulatory functions within the plant cell and may be part of a signaling pathway.Cognat, Valerie
Morelle, Geoffrey
Megel, Cyrille
Lalande, Stephanie
Molinier, Jean
Vincent, Timothee
Small, Ian
Duchene, Anne-Marie
Marechal-Drouard, Laurence
eng
England
2016/12/03 06:00
Nucleic Acids Res. 2017 Apr 7;45(6):3460-3472. doi: 10.1093/nar/gkw1122.PMC538970
The Complete Chloroplast and Mitochondrial Genome Sequences of Boea hygrometrica: Insights into the Evolution of Plant Organellar Genomes
The complete nucleotide sequences of the chloroplast (cp) and mitochondrial (mt) genomes of resurrection plant Boea hygrometrica (Bh, Gesneriaceae) have been determined with the lengths of 153,493 bp and 510,519 bp, respectively. The smaller chloroplast genome contains more genes (147) with a 72% coding sequence, and the larger mitochondrial genome have less genes (65) with a coding faction of 12%. Similar to other seed plants, the Bh cp genome has a typical quadripartite organization with a conserved gene in each region. The Bh mt genome has three recombinant sequence repeats of 222 bp, 843 bp, and 1474 bp in length, which divide the genome into a single master circle (MC) and four isomeric molecules. Compared to other angiosperms, one remarkable feature of the Bh mt genome is the frequent transfer of genetic material from the cp genome during recent Bh evolution. We also analyzed organellar genome evolution in general regarding genome features as well as compositional dynamics of sequence and gene structure/organization, providing clues for the understanding of the evolution of organellar genomes in plants. The cp-derived sequences including tRNAs found in angiosperm mt genomes support the conclusion that frequent gene transfer events may have begun early in the land plant lineage
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