386 research outputs found

    PITX1, a specificity determinant in the HIF-1α-mediated transcriptional response to hypoxia

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    Hypoxia is an important developmental cue for multicellular organisms but it is also a contributing factor for several human pathologies, such as stroke, cardiovascular diseases and cancer. In cells, hypoxia activates a major transcriptional program coordinated by the Hypoxia Inducible Factor (HIF) family. HIF can activate more than one hundred targets but not all of them are activated at the same time, and there is considerable cell type variability. In this report we identified the paired-like homeodomain pituitary transcription factor (PITX1), as a transcription factor that helps promote specificity in HIF-1α dependent target gene activation. Mechanistically, PITX1 associates with HIF-1β and it is important for the induction of certain HIF-1 dependent genes but not all. In particular, PITX1 controls the HIF-1α-dependent expression of the histone demethylases; JMJD2B, JMJD2A, JMJD2C and JMJD1B. Functionally, PITX1 is required for the survival and proliferation responses in hypoxia, as PITX1 depleted cells have higher levels of apoptotic markers and reduced proliferation. Overall, our study identified PITX1 as a key specificity factor in HIF-1α dependent responses, suggesting PITX1 as a protein to target in hypoxic cancers

    Lithostratigraphy, biostratigraphy, and stable-isotope stratigraphy of cores from ODP Leg 105 site surveys, Labrador Sea and Baffin Bay

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    Trigger weight (TWC) and piston (PC) cores obtained from surveys of the three sites drilled during Ocean Drilling Program (ODP) Leg 105 were studied in detail for benthic foraminiferal assemblages, total carbonate (all sites), planktonic foraminiferal abundances (Sites 645 and 647), and stable isotopes (Sites 646 and 647). These high-resolution data provide the link between modern environmental conditions represented by the sediment in the TWC and the uppermost cores of the ODP holes. This link provides essential control data for interpretating late Pleistocene paleoceanographic records from these core holes. At Site 645 in Baffin Bay, local correlation is difficult because the area is dominated by ice-rafted deposits and by debris flows and/or turbidite sedimentation. At the two Labrador Sea sites (646 and 647), the survey cores and uppermost ODP cores can be correlated. High-resolution data from the site survey cores also provide biostratigraphic data that refine the interpretations compiled from core-catcher samples at each ODP site

    Silk from Crickets: A New Twist on Spinning

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    Raspy crickets (Orthoptera: Gryllacrididae) are unique among the orthopterans in producing silk, which is used to build shelters. This work studied the material composition and the fabrication of cricket silk for the first time. We examined silk-webs produced in captivity, which comprised cylindrical fibers and flat films. Spectra obtained from micro-Raman experiments indicated that the silk is composed of protein, primarily in a beta-sheet conformation, and that fibers and films are almost identical in terms of amino acid composition and secondary structure. The primary sequences of four silk proteins were identified through a mass spectrometry/cDNA library approach. The most abundant silk protein was large in size (300 and 220 kDa variants), rich in alanine, glycine and serine, and contained repetitive sequence motifs; these are features which are shared with several known beta-sheet forming silk proteins. Convergent evolution at the molecular level contrasts with development by crickets of a novel mechanism for silk fabrication. After secretion of cricket silk proteins by the labial glands they are fabricated into mature silk by the labium-hypopharynx, which is modified to allow the controlled formation of either fibers or films. Protein folding into beta-sheet structure during silk fabrication is not driven by shear forces, as is reported for other silks

    How Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS) progresses. The natural history of ME/CFS

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    We propose a framework for understanding and interpreting the pathophysiology of Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS) that considers wider determinants of health and long-term temporal variation in pathophysiological features and disease phenotype throughout the natural history of the disease. As in other chronic diseases, ME/CFS evolves through different stages, from asymptomatic predisposition, progressing to a prodromal stage, and then to symptomatic disease. Disease incidence depends on genetic makeup and environment factors, the exposure to singular or repeated insults, and the nature of the host response. In people who develop ME/CFS, normal homeostatic processes in response to adverse insults may be replaced by aberrant responses leading to dysfunctional states. Thus, the predominantly neuro-immune manifestations, underlined by a hyper-metabolic state, that characterize early disease, may be followed by various processes leading to multi-systemic abnormalities and related symptoms. This abnormal state and the effects of a range of mediators such as products of oxidative and nitrosamine stress, may lead to progressive cell and metabolic dysfunction culminating in a hypometabolic state with low energy production. These processes do not seem to happen uniformly; although a spiraling of progressive inter-related and self-sustaining abnormalities may ensue, reversion to states of milder abnormalities is possible if the host is able to restate responses to improve homeostatic equilibrium. With time variation in disease presentation, no single ME/CFS case description, set of diagnostic criteria, or molecular feature is currently representative of all patients at different disease stages. While acknowledging its limitations due to the incomplete research evidence, we suggest the proposed framework may support future research design and health care interventions for people with ME/CFS

    Atlas of modern dinoflagellate cyst distributions in the Black Sea Corridor: From Aegean to Aral Seas, including Marmara, Black, Azov and Caspian Seas

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    We present the first comprehensive taxonomic and environmental study of dinoflagellate cysts in 185 surface sediment samples from the Black Sea Corridor (BSC) which is a series of marine basins extending from the Aegean to the Aral Seas (including Marmara, Black, Azov and Caspian Seas). For decades, these low-salinity, semi-enclosed or endorheic basins have experienced large-scale changes because of intensive agriculture and industrialisation, with consequent eutrophication and increased algal blooms. The BSC atlas data provide a baseline for improved understanding of linkages between surface water conditions and dinoflagellate cyst (dinocyst) distribution, diversity and morphological variations. By cross-reference to dinocyst occurrences in sediment cores with radiocarbon ages covering the past c. 11,700 years, the history of recent biodiversity changes can be evaluated. The seabed cyst samples integrate seasonal and multi-year data which are not usually captured by plankton samples, and the cyst composition can point to presence of previously unrecorded motile dinoflagellate species in the BSC. Results show the presence of at least 71 dinocyst taxa of which 36% can be related to motile stages recorded in the plankton. Comparison with sediment core records shows that five new taxa appear to have entered or re-entered the region over the past century. Statistical analysis of the atlas data reveals the presence of four ecological assemblages which are primarily correlated with seasonal and annual surface water salinity and temperature; correlation with phosphate, nitrate and silicate nutrients, chlorophyll-a and bottom water oxygen is less clear but may be important for some taxa. Biodiversity indices reveal strong west − east biogeographical differences among the basins that reflect the different histories of Mediterranean versus Ponto-Caspian connections. The atlas data provide a standardised taxonomy and regional database for interpreting downcore cyst variations in terms of quantitative oceanographic changes. The atlas also provides a baseline for monitoring further changes in the BSC dinocysts that may accompany the accelerating development of the region

    New structural insights into densely assembled reduced graphene oxide membranes

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    Densely assembled graphene-based membranes have attracted substantial interest for their widespread applications, such as compact capacitive energy storage, ion/molecular separation, gas barrier films, and flexible electronics. However, the multiscale structure of densely packed graphene membranes remains ambiguously understood. This article combines X-ray and light scattering techniques as well as dynamic electrosorption analysis to uncover the stacking structure of the densely stacked reduced graphene oxide (rGO) membranes. The membranes are produced by reducing graphene oxide (GO) membranes with hydrazine, during which the colloidal interactions between GO sheets are modulated by the electrolyte solution. In contrast to the common notion that direct reduction of densely assembled GO sheets in parallel tends to result in significant “graphitization”, this article unexpectedly discovers that the resultant densely packed rGO membrane can still retain the interconnected network nanochannels and show good capacitive performances. This inspires the development of a hierarchical structural model to describe the densely packed rGO membranes. This article further shows that the nanochannel network can be fine-tuned at the sub-nanometer level by tailoring the salt concentration and the reduction temperature to render exceptional volumetric capacitance and good rate performance for rGO membranes even with increased packing density

    Ancient DNA derived from alkenone-biosynthesizing haptophytes and other algae in Holocene sediments from the Black Sea

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    Author Posting. © American Geophysical Union, 2006. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Paleoceanography 21 (2006): PA1005, doi:10.1029/2005PA001188.Holocene sea surface temperatures (SST) of the Black Sea have been reconstructed using sedimentary C37 unsaturated alkenones assumed to be derived from the coccolithophorid haptophyte Emiliania huxleyi, whose fossil coccoliths are an important constituent of the unit I sediments. However, alkenones can also be biosynthesized by haptophyte species that do not produce microscopic recognizable coccoliths. A species-specific identification of haptophytes is important in such U 37 K′-based past SST reconstructions since different species have different alkenone-SST calibrations. We showed that 18S rDNA of E. huxleyi made up only a very small percentage (less than 0.8%) of the total eukaryotic 18S rDNA within the up to 3600-year-old fossil record obtained from the depocenter (>2000 m) of the Black Sea. The predominant fossil 18S rDNA was derived from dinoflagellates (Gymnodinium spp.), which are predominant members of the summer phytoplankton bloom in the modern Black Sea. Using a polymerase chain reaction/denaturing gradient gel electrophoresis method selective for haptophytes, we recovered substantial numbers of a preserved 458-base-pair (bp)-long 18S rDNA fragment of E. huxleyi from the Holocene Black Sea sediments. Additional fossil haptophyte sequences were not detected, indicating that the E. huxleyi alkenone-SST calibration can be applied for at least the last ∼3600 years. The ancient E. huxleyi DNA was well protected against degradation since the DNA/alkenone ratio did not significantly decrease throughout the whole sediment core and 20% of ∼2700-year-old fossil E. huxleyi DNA was still up to 23,000 base pairs long. We showed that fossil DNA offers great potential to study the Holocene paleoecology and paleoenvironment of anoxic deep-sea settings in unprecedented detail.This work was supported by a grant from the Netherlands Organization for Scientific Research (NWO) (Open Competition Program 813.13.001 to M.J.L.C.) and NSF grant OCE0117824 to S.G.W., which we greatly appreciate

    EPidemiology Of Cardiogenic sHock in Scotland (EPOCHS):a multicentre, prospective observational study of the prevalence, management and outcomes of cardiogenic shock in Scotland

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    BackgroundDespite high rates of cardiovascular disease in Scotland, the prevalence and outcomes of patients with cardiogenic shock are unknown.MethodsWe undertook a prospective observational cohort study of consecutive patients with cardiogenic shock admitted to the intensive care unit (ICU) or coronary care unit at 13 hospitals in Scotland for a six-month period. Denominator data from the Scottish Intensive Care Society Audit Group were used to estimate ICU prevalence; data for coronary care units were unavailable. We undertook multivariable logistic regression to identify factors associated with in-hospital mortality.ResultsIn total, 247 patients with cardiogenic shock were included. After exclusion of coronary care unit admissions, this comprised 3.0% of all ICU admissions during the study period (95% confidence interval [CI] 2.6 to 3.5%). Aetiology was acute myocardial infarction (AMI) in 48%. The commonest vasoactive treatment was noradrenaline (56%) followed by adrenaline (46%) and dobutamine (40%). Mechanical circulatory support was used in 30%. Overall in-hospital mortality was 55%. After multivariable logistic regression, age (odds ratio [OR] 1.04, 95% CI 1.02 to 1.06), admission lactate (OR 1.10, 95% CI 1.05 to 1.19), Society for Cardiovascular Angiographic Intervention stage D or E at presentation (OR 2.16, 95% CI 1.10 to 4.29), and use of adrenaline (OR 2.73, 95% CI 1.40 to 5.40) were associated with mortality.ConclusionsIn Scotland the prevalence of cardiogenic shock was 3% of all ICU admissions; more than half died prior to discharge. There was significant variation in treatment approaches, particularly with respect to vasoactive support strategy. <br/
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