Catalyst: A Social Justice Forum, Volume One, Issue One

It is with great pride that we present to you the inaugural issue of Catalyst: A Social Justice Forum. Here we have attempted to create an innovative, peer-reviewed space in which people from numerous disciplines, or even those claiming no discipline, can present research, multimedia, and art aimed at furthering the ideals of social justice, broadly defined. Social justice is not a concept owned by the academy, for attempts to create a more just world can come from many professions, or even from no profession at all. By applying the traditionally academic peer-review process to work done by activists, artists, academics and others, we hope to retain the best aspects of the digital world, such as ease of creation and access, while producing high quality work in the face of a world threatened by information overload. The purpose of this journal is to create a space for dynamic conversations that allow us to think about what social justice means and how we may be able to actualize such an ephemeral yet necessary idea

Ischemic Colitis Secondary to Ergotamine Use: A Case Study

A 48-year-old woman with a history of chronic migraines, initially admitted for inpatient management of intractable migraine headaches, developed new onset abdominal pain, hypotension, and diarrhea on hospital day number ten. In our institution's headache unit, patients are treated by a multidisciplinary approach, including individualized drug therapy based on diagnosis and previous response to therapy. Given the patient's hypotension and clinical appearance, she was transferred to the intensive care unit and treated for septic shock and metabolic acidosis. A bedside colonscopy revealed diffuse ischemic colitis. Final pathology after colon resection showed widespread, transmural necrosis of the colonic wall. We review the pathophysiology of ergotamine use and its potential association with ischemic colitis

Combined analysis of solar neutrino and solar irradiance data: further evidence for variability of the solar neutrino flux and its implications concerning the solar core

A search for any particular feature in any single solar neutrino dataset is unlikely to establish variability of the solar neutrino flux since the count rates are very low. It helps to combine datasets, and in this article we examine data from both the Homestake and GALLEX experiments. These show evidence of modulation with a frequency of 11.85 yr-1, which could be indicative of rotational modulation originating in the solar core. We find that precisely the same frequency is prominent in power spectrum analyses of the ACRIM irradiance data for both the Homestake and GALLEX time intervals. These results suggest that the solar core is inhomogeneous and rotates with sidereal frequency 12.85 yr-1. We find, by Monte Carlo calculations, that the probability that the neutrino data would by chance match the irradiance data in this way is only 2 parts in 10,000. This rotation rate is significantly lower than that of the inner radiative zone (13.97 yr-1) as recently inferred from analysis of Super-Kamiokande data, suggesting that there may be a second, inner tachocline separating the core from the radiative zone. This opens up the possibility that there may be an inner dynamo that could produce a strong internal magnetic field and a second solar cycle.Comment: 22 pages, 9 tables, 10 figure

The Pulsation of Chi Cygni Imaged by Optical Interferometry; a Novel Technique to Derive Distance and Mass of Mira Stars

We present infrared interferometric imaging of the S-type Mira star Chi Cygni. The object was observed at four different epochs in 2005-2006 with the IOTA optical interferometer (H band). Images show up to 40% variation in the stellar diameter, as well as significant changes in the limb darkening and stellar inhomogeneities. Model fitting gave precise time-dependent values of the stellar diameter, and reveals presence and displacement of a warm molecular layer. The star radius, corrected for limb darkening, has a mean value of 12.1 mas and shows a 5.1mas amplitude pulsation. Minimum diameter was observed at phase 0.94+/-0.01. Maximum temperature was observed several days later at phase 1.02+/-0.02. We also show that combining the angular acceleration of the molecular layer with CO (Delta v = 3) radial velocity measurements yields a 5.9+/-1.5 mas parallax. The constant acceleration of the CO molecules -- during 80% of the pulsation cycle -- lead us to argument for a free-falling layer. The acceleration is compatible with a gravitational field produced by a 2.1(+1.5/-0.7) solar mass star. This last value is in agreement with fundamental mode pulsator models. We foresee increased development of techniques consisting in combining radial velocity with interferometric angular measurements, ultimately allowing total mapping of the speed, density, and position of the diverse species in pulsation driven atmospheres.Comment: 36 pages, accepted in Ap

Detection of circumstellar material in a normal Type Ia Supernova

Type Ia supernovae are thought to be thermonuclear explosions of accreting white dwarfs that reach a critical mass limit. Despite their importance as cosmological distance indicators, the nature of their progenitors has remained controversial. Here we report the detection of circumstellar material in a normal Type Ia supernova. The expansion velocities, densities and dimensions of the circumstellar envelope indicate that this material was ejected from the progenitor system. The relatively low expansion velocities appear to favor a progenitor system where a white dwarf accretes material from a companion star which is in the red-giant phase at the time of explosion.Comment: 25 pages, 7 figures. Accepted for publication in Science. Full resolution version at http://www.hq.eso.org/~fpatat/science/sn06X/preprint.pdf . The original paper can be found at http://www.sciencemag.org/cgi/content/abstract/114300

Association energetics of cross-reactive and specific antibodies

HyHEL-8, HyHEL-10, and HyHEL-26 (HH8, HH10, and HH26, respectively) are murine monoclonal IgG1 antibodies which share over 90% variable-region amino acid sequence identity and recognize identical structurally characterized epitopes on hen egg white lysozyme (HEL). Previous immunochemical and surface plasmon resonance-based studies have shown that these antibodies differ widely in their tolerance of mutations in the epitope. While HH8 is the most cross-reactive, HH26 is rigidified by a more extensive network of intramolecular salt links and is highly specific, with both association and dissociation rates strongly affected by epitope mutations. HH10 is of intermediate specificity, and epitope mutations produce changes primarily in the dissociation rate. Calorimetric characterization of the association energetics of these three antibodies with the native antigen HEL and with Japanese quail egg white lysozyme (JQL), a naturally occurring avian variant, shows that the energetics of interaction correlate with cross-reactivity and specificity. These results suggest that the greater cross-reactivity of HH8 may be mediated by a combination of conformational flexibility and less specific intermolecular interactions. Thermodynamic calculations suggest that upon association HH8 incurs the largest configurational entropic penalty and also the smallest loss of enthalpic driving force with variant antigen. Much smaller structural perturbations are expected in the formation of the less flexible HH26 complex, and the large loss of enthalpic driving force observed with variant antigen reflects its specificity. The observed thermodynamic parameters correlate well with the observed functional behavior of the antibodies and illustrate fundamental differences in thermodynamic characteristics between cross-reactive and specific molecular recognition

Geologically constrained evolutionary geomechanical modelling of diapir and basin evolution: a case study from the Tarfaya basin, West African coast

We systematically incorporate burial history, sea floor geometry and tectonic loads from a sequential kinematic restoration model into a 2D evolutionary geomechanical model that simulates the formation of the Sandia salt diapir, Tarfaya basin, NW African Coast. We use a poro-elastoplastic description for the sediment behaviour and a viscoplastic description for the salt. Sedimentation is coupled with salt flow and regional shortening to determine the sediment porosity and strength and to capture the interaction between salt and sediments. We find that temporal and spatial variation in sedimentation rate is a key control on the kinematic evolution of the salt system. Incorporation of sedimentation rates from the kinematic restoration at a location east of Sandia leads to a final geomechanical model geometry very similar to that observed in seismic reflection data. We also find that changes in the variation of shortening rates can significantly affect the present-day stress state above salt. Overall, incorporating kinematic restoration data into evolutionary models provides insights into the key parameters that control the evolution of geologic systems. Furthermore, it enables more realistic evolutionary geomechanical models, which, in turn, provide insights into sediment stress and porosity

Imaging the disc rim and a moving close-in companion candidate in the pre-transitional disc of V1247 Orionis

This is the author accepted manuscript. The final version is available from EDP Sciences via the DOI in this record.Context. V1247 Orionis harbours a pre-transitional disc with a partially cleared gap. Earlier interferometric and polarimetric observations revealed strong asymmetries both in the gap region and in the outer disc. The presence of a companion was inferred to explain these asymmetric structures and the ongoing disc clearing. Aims. Using an extensive set of multi-wavelength and multi-epoch observations we aimed to identify the origin of the previously detected asymmetries. Methods. We observed V1247 Ori at three epochs spanning ∼ 678 days using sparse aperture masking interferometry with Keck/NIRC2 and VLT/NACO. In addition, we search for signs of accretion through VLT/SPHERE-ZIMPOL spectral differential imaging in Hα and R-band continuum. Our SMA sub-millimetre interferometry in 880 µm continuum and in the CO(3-2) line allows us to constrain the orientation and direction of rotation of the outer disc. Results. We find the L’-band emission to be dominated by static features which trace forward-scattered dust emission from the inner edge of the outer disc located to the north-east. In H- and K-band, we see evidence for a companion candidate that moved systematically by 45◦ within the first ∼345 days. The separation of the companion candidate is not well constrained, but the observed position angle change is consistent with Keplerian motion of a body located on a 6 au orbit. From the SMA CO moment map, the location of the disc rim, and the detected orbital motion, we deduced the 3-dimensional orientation of the disc. We see no indication of accretion in Hα and set upper limits for an accreting companion. Conclusions. The measured contrast of the companion candidate in H and K is consistent with an actively accreting protoplanet. Hence, we identify V1247 Ori as a unique laboratory for studying companion-disc interactions and disc clearing.We acknowledge support from an ERC Starting Grant (Grant Agreement No. 639889), STFC Rutherford Fellowship Article number, page 14 of 17 M. Willson et al.: Imaging the disc rim and companion candidate in V1247 Ori (ST/J004030/1), STFC Rutherford Grant (ST/K003445/1), Marie SklodowskaCurie CIG grant (Ref. 618910), and Philip Leverhulme Prize (PLP-2013-110). We additionally acknowledge support from NASA KPDA grants (JPL-1452321, 1474717, 1485953, 1496788). The Submillimeter Array is a joint project between the Smithsonian Astrophysical Observatory and the Academia Sinica Institute of Astronomy and Astrophysics and is funded by the Smithsonian Institution and the Academia Sinica. The authors wish to recognize and acknowledge the very significant cultural role and reverence that the summit of Mauna Kea has always had within the indigenous Hawaiian community. We are most fortunate to have the opportunity to conduct observations from this mountain.Some of the data presented herein were obtained at the W.M. Keck Observatory, which is operated as a scientific partnership among the California Institute of Technology, the University of California and the National Aeronautics and Space Administration. The Observatory was made possible by the generous financial support of the W.M. Keck Foundation. J. Kluska acknowledges support from the research council of the KU Leuven under grant number C14/17/082. M. Curé and S. Kanaan acknowledge financial support from Centro de Astrofísica de Valparaiso. S. Kanaan thank the support of Fondecyt iniciacíon grant No. 11130702. T. Muto is partially supported by JSPS KAKENHI grant No. 26800106

Phylogenomics of the genus Tursiops and closely related Delphininae reveals extensive reticulation among lineages and provides inference about eco-evolutionary drivers

Phylogeographic inference has provided extensive insight into the relative roles of geographical isolation and ecological processes during evolutionary radiations. However, the importance of cross-lineage admixture in facilitating adaptive radiations is increasingly being recognised, and suggested as a main cause of phylogenetic uncertainty. In this study, we used a double digest RADseq protocol to provide a high resolution (∼ 4 Million bp) nuclear phylogeny of the Delphininae. Phylogenetic resolution of this group has been especially intractable, likely because it has experienced a recent species radiation. We carried out cross-lineage reticulation analyses, and tested for several sources of potential bias in determining phylogenies from genome sampling data. We assessed the divergence time and historical demography of T. truncatus and T. aduncus by sequencing the T. aduncus genome and comparing it with the T. truncatus reference genome. Our results suggest monophyly for the genus Tursiops, with the recently proposed T. australis species falling within the T. aduncus lineage. We also show the presence of extensive cross-lineage gene flow between pelagic and European coastal ecotypes of T. truncatus, as well as in the early stages of diversification between spotted (Stenella frontalis; Stenella attenuata), spinner (Stenella longirostris), striped (Stenella coeruleoalba), common (Delphinus delphis), and Fraser’s (Lagenodelphis hosei) dolphins. Our study suggests that cross-lineage gene flow in this group has been more extensive and complex than previously thought. In the context of biogeography and local habitat dependence, these results improve our understanding of the evolutionary processes determining the history of this lineage