Interaction of Sesbania Mosaic Virus Movement Protein with VPg and P10: Implication to Specificity of Genome Recognition

Sesbania mosaic virus (SeMV) is a single strand positive-sense RNA plant virus that belongs to the genus Sobemovirus. The mechanism of cell-to-cell movement in sobemoviruses has not been well studied. With a view to identify the viral encoded ancillary proteins of SeMV that may assist in cell-to-cell movement of the virus, all the proteins encoded by SeMV genome were cloned into yeast Matchmaker system 3 and interaction studies were performed. Two proteins namely, viral protein genome linked (VPg) and a 10-kDa protein (P10) c v gft encoded by OFR 2a, were identified as possible interacting partners in addition to the viral coat protein (CP). Further characterization of these interactions revealed that the movement protein (MP) recognizes cognate RNA through interaction with VPg, which is covalently linked to the 5′ end of the RNA. Analysis of the deletion mutants delineated the domains of MP involved in the interaction with VPg and P10. This study implicates for the first time that VPg might play an important role in specific recognition of viral genome by MP in SeMV and shed light on the possible role of P10 in the viral movement

Cosmological Simulations of Galaxy Groups and Clusters-III: Constraining Quasar Feedback Models with the Atacama Large Millimeter Array

The thermal Sunyaev-Zeldovich (SZ) effect serves as a direct potential probe of the energetic outflows from quasars that are responsible for heating the intergalactic medium. In this work, we use the GIZMO meshless finite mass hydrodynamic cosmological simulation SIMBA (Dave et al. 2019), which includes different prescriptions for quasar feedback, to compute the SZ effect arising from different feedback modes. From these theoretical simulations, we perform mock observations of the Atacama Large Millimeter Array (ALMA) in four bands (320 GHz, 135 GHZ, 100 GHz and 42 GHz) to characterize the feasibility of direct detection of the quasar SZ signal. Our results show that for all the systems we get an enhancement of the SZ signal, when there is radiative feedback, while the signal gets suppressed when the jet mode of feedback is introduced in the simulations. Our mock ALMA maps reveal that, with the current prescription of jet feedback, the signal goes below the detection threshold of ALMA. We also find that the signal is higher for high redshift systems, making it possible for ALMA and cross SZ-X-ray studies to disentangle the varying modes of quasar feedback and their relative importance in the cosmological context.Comment: Accepted for publication in Ap

A study on epidemiology of HER2/NEU positive breast cancer of patients presented in a tertiary care teaching hospital, Kolkata, West Bengal

Background: Breast cancer is the second most common cancer now, after lung cancer, when ranked by cancer occurrence in both sexes. The aim of this study was to determine the correlation between various modifiable and non modifiable risk factors among women with HER2/neu positive breast cancer attending at Medical College and Hospital, Kolkata. Materials & Methods: A cross sectional analytical epidemiological study in Out Patient Department & Emergency Department of General Surgery, Medical College& Hospital, Kolkata. Period of study was between January 2018 to June 2019. All the adult breast cancer patients attending Department of General Surgery, Medical College & Hospital, Kolkata were included in the study and that came out to be 25 HER2 neu positive and 35 HER2 neu negative patients. All together 60 patients were included. Results: We have found 60 patients among them 25 patients were HER2/neu positive and 35 patients were HER2/neu negative i.e. 42% of patients in our study found to be HER2/neu positive. Among these patients the patient with minimum age was 38 years old, and the maximum aged patient was 65 years old.The average age was 57.33 years. The average age of HER2/neu positive group was 57.77 years and the HER2/neu negative group was 56.48 years. About 35% of these patients had history of OCP intake. Among HER2/neu positive patients 57.1% & HER2/neu negative 42.9% had history of OCP intake. Most of the patients in this study are in pre-obese (BMI 25-29.99) class as per BMI. About 18 HER2/neu positive patients and 26 HER2/neu negative patients are within this group. Five (14.28%) patient in HER2/neu negative group and 3 (12%) in HER2/neu positive group has positive family history of breast cancer. In our study we have found that menarche of minimum age of 9 years and maximum age at 15 years. Maximum no. of patients found their menarche at the age of 12 years. Conclusion: From our study and analysis we could not establish any obvious significant difference between epidemiological distributions of breast cancer patients in respect to HER2/neu status. Hence this can be concluded from our study that there is no different epidemiological pattern of breast cancer in respect to HER2/neu status

MUSiC : a model-unspecific search for new physics in proton-proton collisions at root s=13TeV

Results of the Model Unspecific Search in CMS (MUSiC), using proton-proton collision data recorded at the LHC at a centre-of-mass energy of 13 TeV, corresponding to an integrated luminosity of 35.9 fb(-1), are presented. The MUSiC analysis searches for anomalies that could be signatures of physics beyond the standard model. The analysis is based on the comparison of observed data with the standard model prediction, as determined from simulation, in several hundred final states and multiple kinematic distributions. Events containing at least one electron or muon are classified based on their final state topology, and an automated search algorithm surveys the observed data for deviations from the prediction. The sensitivity of the search is validated using multiple methods. No significant deviations from the predictions have been observed. For a wide range of final state topologies, agreement is found between the data and the standard model simulation. This analysis complements dedicated search analyses by significantly expanding the range of final states covered using a model independent approach with the largest data set to date to probe phase space regions beyond the reach of previous general searches.Peer reviewe

Measurement of prompt open-charm production cross sections in proton-proton collisions at root s=13 TeV

The production cross sections for prompt open-charm mesons in proton-proton collisions at a center-of-mass energy of 13TeV are reported. The measurement is performed using a data sample collected by the CMS experiment corresponding to an integrated luminosity of 29 nb(-1). The differential production cross sections of the D*(+/-), D-+/-, and D-0 ((D) over bar (0)) mesons are presented in ranges of transverse momentum and pseudorapidity 4 < p(T) < 100 GeV and vertical bar eta vertical bar < 2.1, respectively. The results are compared to several theoretical calculations and to previous measurements.Peer reviewe

Measurement of B-c(2S)(+) and B-c*(2S)(+) cross section ratios in proton-proton collisions at root s=13 TeV

Peer reviewe

Global, regional, and national disability-adjusted life-years (DALYs) for 333 diseases and injuries and healthy life expectancy (HALE) for 195 countries and territories, 1990–2016: a systematic analysis for the Global Burden of Disease Study 2016

BACKGROUND: Measurement of changes in health across locations is useful to compare and contrast changing epidemiological patterns against health system performance and identify specific needs for resource allocation in research, policy development, and programme decision making. Using the Global Burden of Diseases, Injuries, and Risk Factors Study 2016, we drew from two widely used summary measures to monitor such changes in population health: disability-adjusted life-years (DALYs) and healthy life expectancy (HALE). We used these measures to track trends and benchmark progress compared with expected trends on the basis of the Socio-demographic Index (SDI). METHODS: We used results from the Global Burden of Diseases, Injuries, and Risk Factors Study 2016 for all-cause mortality, cause-specific mortality, and non-fatal disease burden to derive HALE and DALYs by sex for 195 countries and territories from 1990 to 2016. We calculated DALYs by summing years of life lost and years of life lived with disability for each location, age group, sex, and year. We estimated HALE using age-specific death rates and years of life lived with disability per capita. We explored how DALYs and HALE differed from expected trends when compared with the SDI: the geometric mean of income per person, educational attainment in the population older than age 15 years, and total fertility rate. FINDINGS: The highest globally observed HALE at birth for both women and men was in Singapore, at 75·2 years (95% uncertainty interval 71·9-78·6) for females and 72·0 years (68·8-75·1) for males. The lowest for females was in the Central African Republic (45·6 years [42·0-49·5]) and for males was in Lesotho (41·5 years [39·0-44·0]). From 1990 to 2016, global HALE increased by an average of 6·24 years (5·97-6·48) for both sexes combined. Global HALE increased by 6·04 years (5·74-6·27) for males and 6·49 years (6·08-6·77) for females, whereas HALE at age 65 years increased by 1·78 years (1·61-1·93) for males and 1·96 years (1·69-2·13) for females. Total global DALYs remained largely unchanged from 1990 to 2016 (-2·3% [-5·9 to 0·9]), with decreases in communicable, maternal, neonatal, and nutritional (CMNN) disease DALYs offset by increased DALYs due to non-communicable diseases (NCDs). The exemplars, calculated as the five lowest ratios of observed to expected age-standardised DALY rates in 2016, were Nicaragua, Costa Rica, the Maldives, Peru, and Israel. The leading three causes of DALYs globally were ischaemic heart disease, cerebrovascular disease, and lower respiratory infections, comprising 16·1% of all DALYs. Total DALYs and age-standardised DALY rates due to most CMNN causes decreased from 1990 to 2016. Conversely, the total DALY burden rose for most NCDs; however, age-standardised DALY rates due to NCDs declined globally. INTERPRETATION: At a global level, DALYs and HALE continue to show improvements. At the same time, we observe that many populations are facing growing functional health loss. Rising SDI was associated with increases in cumulative years of life lived with disability and decreases in CMNN DALYs offset by increased NCD DALYs. Relative compression of morbidity highlights the importance of continued health interventions, which has changed in most locations in pace with the gross domestic product per person, education, and family planning. The analysis of DALYs and HALE and their relationship to SDI represents a robust framework with which to benchmark location-specific health performance. Country-specific drivers of disease burden, particularly for causes with higher-than-expected DALYs, should inform health policies, health system improvement initiatives, targeted prevention efforts, and development assistance for health, including financial and research investments for all countries, regardless of their level of sociodemographic development. The presence of countries that substantially outperform others suggests the need for increased scrutiny for proven examples of best practices, which can help to extend gains, whereas the presence of underperforming countries suggests the need for devotion of extra attention to health systems that need more robust support. FUNDING: Bill & Melinda Gates Foundation

Measurement of the W gamma Production Cross Section in Proton-Proton Collisions at root s=13 TeV and Constraints on Effective Field Theory Coefficients

A fiducial cross section for W gamma production in proton-proton collisions is measured at a center-of-mass energy of 13 TeV in 137 fb(-1) of data collected using the CMS detector at the LHC. The W -> e nu and mu nu decay modes are used in a maximum-likelihood fit to the lepton-photon invariant mass distribution to extract the combined cross section. The measured cross section is compared with theoretical expectations at next-to-leading order in quantum chromodynamics. In addition, 95% confidence level intervals are reported for anomalous triple-gauge couplings within the framework of effective field theory.Peer reviewe