Genetic Pathways to Environmentally Friendly Pigs

The Environmental Protection Agency (EPA) has enacted regulations that will restrict the amount of phosphorus (P) that can be applied to land. With the vast majority of swine production sites operating at high stocking densities and having less available land on which to apply animal effluent, increased P levels in manure could substantially increase production costs

Searching for mutations in pigs using the human genome

In humans, mice, rats, primates and pigs, it has been observed that some genes contain a high number of mutations, while others contain no mutations at all. It has not been determined whether a relationship exists across species for the variability of mutation number (i.e. a gene with a large number of mutations in one species will also have a large number of mutations in a closely related species). Here, the number of mutations in regions of genes that code for proteins were compared across pig, human and mouse. For the comparison, the pig mutations were obtained using computational methods that sorted through gene sequences to find differences. The mutations in humans and mice were real mutations from studies of individuals/animals. A high human-pig correlation and a lesser human-mouse correlation were found after comparing mutation number in genes. This is the first evidence of similarity across species in the variability of mutation number in genes. It indicates that discovery of mutations in pigs could be increased by searching in pig genes that are similar to human genes previously shown to have a large number of mutations in their protein coding regions. Some of these newly discovered mutations will change the protein that is produced by the gene, which can affect the protein’s function, and result in changes in economically important traits such as growth, meat quality and reproduction. These mutations can then be used to select animals that are genetically superior

Suma

Se presenta una propuesta de trabajo en el aula a partir de la lectura de el libro El teorema, de Adam Fawer. Así se estudian conceptos como las probabilidades, la criptografía o los juegos de azar, mediante problemas a resolver en las clases.Universitat de Barcelona. Biblioteca de Ciències de l'Educació; Passeig de la Vall d'hebron, 171; 08035 Barcelona; +34934021035; +34934021034;ES

IGR J16318-4848: 7 Years of INTEGRAL Observations

Since the discovery of IGR 116318-4848 in 2003 January, INTEGRAL has accumulated more than 5.8 Ms in IBIS/ISGRI. We present the first extensive analysis of the archival INTEGRAL data (IBIS/ISGRI, and JEM-X when available) for this source, together with the observations carried out by XMM-Newton (twice in 2003, and twice in 2004) and Suzaku (2006). The source is very variable in the long-term, with periods of low activity, where the source is almost not detected, and flares with a luminosity approximately 10 times greater than its average value (5.4 cts/s). IGR 116318-4848 is a HMXB containing a sgB[e] star and a compact object (most probably a neutron star) deeply embedded in the stellar wind of the mass donor. The variability of the source (also in the short-term) can be ascribed to the wind of the optical star being very clumpy. We study the variation of the spectral parameters in time scales of INTEGRAL revolutions. The photoelectric absorption is, with NH around 10(exp 24)/ square cm, unusually high. During brighter phases the strong K-alpha iron line known from XMM-Newton and Suzaku observations is also detectable with the JEM-X instrument

The Grizzly, April 13, 2023

Photo Essay: Spring Has Sprung! • Escape Velocity: Avenge [ance] in the Air • Ursinus Installs New Sustainable Rain Garden • GSA: Creating a Safe Space on Campus • Senior Honors Projects • Opinions: What Renovations Do You Want to See in Lower Wismer? • Playing Ball Like a Girl • Raising the Bar : Ursinus College Women\u27s Lacrosse Teamhttps://digitalcommons.ursinus.edu/grizzlynews/2012/thumbnail.jp

A Comprehensive Spectral Analysis of the X-Ray Pulsar 4U 1907+09 from Two Observations with the Suzaku X-Ray Observatory

We present results from two observations of the wind-accreting X-ray pulsar 4U 1907+09 using the Suzaku observatory. The broadband time-averaged spectrum allows us to examine the continuum emission of the source and the cyclotron resonance scattering feature at ~19 keV. Additionally, using the narrow CCD response of Suzaku near 6 keV allows us to study in detail the Fe K bandpass and to quantify the Fe K beta line for this source for the first time. The source is absorbed by fully-covering material along the line of sight with a column density of NH ~2e22 /cm^2, consistent with a wind accreting geometry, and a high Fe abundance (~3-4 x solar). Time and phase-resolved analyses allow us to study variations in the source spectrum. In particular, dips found in the 2006 observation which are consistent with earlier observations occur in the hard X-ray bandpass, implying a variation of the whole continuum rather than occultation by intervening material, while a dip near the end of the 2007 observation occurs mainly in the lower energies implying an increase in NH along the line of sight, perhaps indicating clumpiness in the stellar wind.Comment: Accepted for publication in ApJ. 12 pages, 16 figure

Suzaku observations of the HMXB 1A 1118-61

We present broad band analysis of the Be/X-ray transient 1A 1118-61 by Suzaku at the peak of its 3rd observed outburst in January 2009 and 2 weeks later when the source flux had decayed by an order of magnitude. The continuum was modeled with a \texttt{cutoffpl} model as well as a compTT model, with both cases requiring an additional black body component at lower energies. We confirm the detection of a cyclotron line at ~5 keV and discuss the possibility of a first harmonic at ~110 keV. Pulse profile comparisons show a change in the profile structure at lower energies, an indication for possible changes in the accretion geometry. Phase resolved spectroscopy in the outburst data show a change in the continuum throughout the pulse period. The decrease in the CRSF centroid energy also indicates that the viewing angle on the accretion column is changing throughout the pulse period.Comment: accepted by Ap

Biosignature stability in space enables their use for life detection on Mars

Two rover missions to Mars aim to detect biomolecules as a sign of extinct or extant life with, among other instruments, Raman spectrometers. However, there are many unknowns about the stability of Raman-detectable biomolecules in the martian environment, clouding the interpretation of the results. To quantify Raman-detectable biomolecule stability, we exposed seven biomolecules for 469 days to a simulated martian environment outside the International Space Station. Ultraviolet radiation (UVR) strongly changed the Raman spectra signals, but only minor change was observed when samples were shielded from UVR. These findings provide support for Mars mission operations searching for biosignatures in the subsurface. This experiment demonstrates the detectability of biomolecules by Raman spectroscopy in Mars regolith analogs after space exposure and lays the groundwork for a consolidated space-proven database of spectroscopy biosignatures in targeted environments

EPG5-related Vici syndrome: a paradigm of neurodevelopmental disorders with defective autophagy

Vici syndrome is a progressive neurodevelopmental multisystem disorder due to recessive mutations in the key autophagy gene EPG5. We report genetic, clinical, neuroradiological, and neuropathological features of 50 children from 30 families, as well as the neuronal phenotype of EPG5 knock-down in Drosophila melanogaster. We identified 39 different EPG5 mutations, most of them truncating and predicted to result in reduced EPG5 protein. Most mutations were private, but three recurrent mutations (p.Met2242Cysfs*5, p.Arg417*, and p.Gln336Arg) indicated possible founder effects. Presentation was mainly neonatal, with marked hypotonia and feeding difficulties. In addition to the five principal features (callosal agenesis, cataracts, hypopigmentation, cardiomyopathy, and immune dysfunction), we identified three equally consistent features (profound developmental delay, progressive microcephaly, and failure to thrive). The manifestation of all eight of these features has a specificity of 97%, and a sensitivity of 89% for the presence of an EPG5 mutation and will allow informed decisions about genetic testing. Clinical progression was relentless and many children died in infancy. Survival analysis demonstrated a median survival time of 24 months (95% confidence interval 0–49 months), with only a 10th of patients surviving to 5 years of age. Survival outcomes were significantly better in patients with compound heterozygous mutations (P = 0.046), as well as in patients with the recurrent p.Gln336Arg mutation. Acquired microcephaly and regression of skills in long-term survivors suggests a neurodegenerative component superimposed on the principal neurodevelopmental defect. Two-thirds of patients had a severe seizure disorder, placing EPG5 within the rapidly expanding group of genes associated with early-onset epileptic encephalopathies. Consistent neuroradiological features comprised structural abnormalities, in particular callosal agenesis and pontine hypoplasia, delayed myelination and, less frequently, thalamic signal intensity changes evolving over time. Typical muscle biopsy features included fibre size variability, central/internal nuclei, abnormal glycogen storage, presence of autophagic vacuoles and secondary mitochondrial abnormalities. Nerve biopsy performed in one case revealed subtotal absence of myelinated axons. Post-mortem examinations in three patients confirmed neurodevelopmental and neurodegenerative features and multisystem involvement. Finally, downregulation of epg5 (CG14299) in Drosophila resulted in autophagic abnormalities and progressive neurodegeneration. We conclude that EPG5-related Vici syndrome defines a novel group of neurodevelopmental disorders that should be considered in patients with suggestive features in whom mitochondrial, glycogen, or lysosomal storage disorders have been excluded. Neurological progression over time indicates an intriguing link between neurodevelopment and neurodegeneration, also supported by neurodegenerative features in epg5-deficient Drosophila, and recent implication of other autophagy regulators in late-onset neurodegenerative disease

Limits of Life and the Habitability of Mars: The ESA Space Experiment BIOMEX on the ISS

BIOMEX (BIOlogy and Mars EXperiment) is an ESA/Roscosmos space exposure experiment housed within the exposure facility EXPOSE-R2 outside the Zvezda module on the International Space Station (ISS). The design of the multiuser facility supports—among others—the BIOMEX investigations into the stability and level of degradation of space-exposed biosignatures such as pigments, secondary metabolites, and cell surfaces in contact with a terrestrial and Mars analog mineral environment. In parallel, analysis on the viability of the investigated organisms has provided relevant data for evaluation of the habitability of Mars, for the limits of life, and for the likelihood of an interplanetary transfer of life (theory of lithopanspermia). In this project, lichens, archaea, bacteria, cyanobacteria, snow/permafrost algae, meristematic black fungi, and bryophytes from alpine and polar habitats were embedded, grown, and cultured on a mixture of martian and lunar regolith analogs or other terrestrial minerals. The organisms and regolith analogs and terrestrial mineral mixtures were then exposed to space and to simulated Mars-like conditions by way of the EXPOSE-R2 facility. In this special issue, we present the first set of data obtained in reference to our investigation into the habitability of Mars and limits of life. This project was initiated and implemented by the BIOMEX group, an international and interdisciplinary consortium of 30 institutes in 12 countries on 3 continents. Preflight tests for sample selection, results from ground-based simulation experiments, and the space experiments themselves are presented and include a complete overview of the scientific processes required for this space experiment and postflight analysis. The presented BIOMEX concept could be scaled up to future exposure experiments on the Moon and will serve as a pretest in low Earth orbit