Benthic diatom monitoring and assessment of freshwater environments: standard methods and future challenges

Fil: Soizic, Morin. National Research Institute of Science and Technology for Environment and Agriculture; FranceFil: Gómez, Nora. Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. Instituto de Limnología Dr. Raúl A. Ringuelet; ArgentinaFil: Tornés, Elisabet. University of Girona. Institute of Aquatic Ecology; SpainFil: Licursi, Magdalena. Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. Instituto de Limnología Dr. Raúl A. Ringuelet; ArgentinaFil: Rosebery, Juliette. Aquatic Ecosystems and Global Changes Research Unit; Franc

Benthic diatom monitoring and assessment of freshwater environments: standard methods and future challenges

Fil: Soizic, Morin. National Research Institute of Science and Technology for Environment and Agriculture; FranceFil: Gómez, Nora. Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. Instituto de Limnología Dr. Raúl A. Ringuelet; ArgentinaFil: Tornés, Elisabet. University of Girona. Institute of Aquatic Ecology; SpainFil: Licursi, Magdalena. Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. Instituto de Limnología Dr. Raúl A. Ringuelet; ArgentinaFil: Rosebery, Juliette. Aquatic Ecosystems and Global Changes Research Unit; Franc

Beta diversity of diatom species and ecological guilds : Response to environmental and spatial mechanisms along the stream watercourse

1. Understanding the mechanisms that drive beta diversity (i.e. beta-diversity), an important aspect of regional biodiversity, remains a priority for ecological research. beta-diversity and its components can provide insights into the processes generating regional biodiversity patterns. We tested whether environmental filtering or dispersal related processes predominated along the stream watercourse by analysing the responses of taxonomic and functional diatom beta-diversity to environmental and spatial factors. 2. We examined the variation in total beta-diversity and its components (turnover and nestedness) in benthic diatom species and ecological guilds (motile, planktonic, low-and high profile) with respect to watercourse position (up-, mid-and downstream) in 2,182 sites throughout France. We tested the effects of pure environmental and pure spatial factors on beta-diversity with partial Mantel tests. Environmental factors included eight physicochemical variables, while geographical distances between sites were used as spatial factors. We also correlated a and c-diversity, and the degree of nestedness (NODF metric) with environmental variables. 3. Total beta-diversity and its turnover component displayed higher values upstream than mid-and downstream. The nestedness component exhibited low values, even when NODF values increased from up-to downstream. Pure environmental factors were highly significant for explaining total beta-diversity and turnover regardless of watercourse position, but pure spatial factors were mostly significant mid-and downstream, with geographical distance being positively correlated with beta-diversity. Across sites, nutrient enrichment decreased turnover but increased the degree of nestedness. Motile and low profile diatoms comprised the most abundant guilds, but their beta-diversity patterns varied in an opposite way. The lowest guild beta-diversity was observed upstream for low profile species, and downstream for motile species. 4. In conclusion, environmental filtering seemed to play a major role in structuring metacommunities irrespective of site watercourse position. Filtering promoted strong turnover patterns, especially in disconnected upstream sites. The greater role of spatial factors mid-and downstream was consistent with mass effects rather than neutral processes because these sites had lower total beta-diversity than upstream sites. Motile species were most strongly affected by mass effects processes, whereas low profile species were primarily influenced by environmental conditions. Collectively, these findings suggest that partitioning of total beta-diversity into its components and the use of diatom ecological guilds provide a useful framework for assessing the mechanisms underlying metacommunity patterns along the stream watercourse.Peer reviewe

Diatom cooccurrence shows less segregation than predicted from niche modeling

Peer reviewe

Les cartes auto-organisatrices de Kohonen appliquées à l'étude des communautés de micro-algues des cours d'eau

Les cartes auto-organisatrices de Kohonen appliquées à l'étude des communautés de micro-algues des cours d'ea

Diatom beta-diversity in streams increases with spatial scale and decreases with nutrient enrichment across regional to sub-continental scales

Aim To quantify the relative contributions of local community assembly processes versus gamma-diversity to beta-diversity, and to assess how spatial scale and anthropogenic disturbance (i.e. nutrient enrichment) interact to dictate which driver dominates. Location France and the United States. Time period 1993-2011. Major taxa studied Freshwater stream diatoms. Methods beta-diversity along a nutrient enrichment gradient was examined across multiple spatial scales. beta-diversity was estimated using multi-site Sorensen dissimilarity. We assessed the relative importance of specialists versus generalists using Friedley coefficient, and the contribution of local community assembly versus gamma-diversity to beta-diversity across spatial scales, with a null model. Finally, we estimated the response of beta-diversity to environmental and spatial factors by testing the correlations between community, environmental and geographical distance matrices with partial Mantel tests. Results beta-diversity generally increased with spatial scale but the rate of increase depended on nutrient enrichment level. beta-diversity decreased significantly with increasing nutrient enrichment level due to the loss of specialist species. Local assembly was an important driver of beta-diversity especially under low nutrient enrichment. Significant partial Mantel correlations were observed between diatom beta-diversity and pure environmental distances under these conditions, highlighting the role of species sorting in local assembly processes. Conversely, in heavily enriched sites, only spatial distances were significantly correlated with beta-diversity, which indicated a substantial role of dispersal processes. Main conclusions Nutrient concentration mediated the expected increase in beta-diversity with spatial scales. Across spatial scales, beta-diversity was more influenced by local assembly processes rather than by gamma-diversity. Nutrient enrichment was associated with an overall decline in diatom beta-diversity and a shift in assembly processes from species sorting to dispersal, notably due to the elimination of some specialists and their subsequent replacement by generalists.Peer reviewe

Biogeographical Patterns of Species Richness and Abundance Distribution in Stream Diatoms Are Driven by Climate and Water Chemistry

In this intercontinental study of stream diatoms, we asked three important but still unresolved ecological questions: (1) What factors drive the biogeography of species richness and species abundance distribution (SAD)? (2) Are climate-related hypotheses, which have dominated the research on the latitudinal and altitudinal diversity gradients, adequate in explaining spatial biotic variability? and (3) Is the SAD response to the environment independent of richness? We tested a number of climatic theories and hypotheses (i.e., the species-energy theory, the metabolic theory, the energy variability hypothesis, and the climatic tolerance hypothesis) but found no support for any of these concepts, as the relationships of richness with explanatory variables were nonexistent, weak, or unexpected. Instead, we demonstrated that diatom richness and SAD evenness generally increased with temperature seasonality and at mid- to high total phosphorus concentrations. The spatial patterns of diatom richness and the SADmainly longitudinal in the United States but latitudinal in Finlandwere defined primarily by the covariance of climate and water chemistry with space. The SAD was not entirely controlled by richness, emphasizing its utility for ecological research. Thus, we found support for the operation of both climate and water chemistry mechanisms in structuring diatom communities, which underscores their complex response to the environment and the necessity for novel predictive frameworks.Peer reviewe

Dispersal-niche continuum index : a new quantitative metric for assessing the relative importance of dispersal versus niche processes in community assembly

Patterns in community composition are scale-dependent and generally difficult to distinguish. Therefore, quantifying the main assembly processes in various systems and across different datasets has remained challenging. Building on the PER-SIMPER method, we propose a new metric, the dispersal-niche continuum index (DNCI), which estimates whether dispersal or niche processes dominate community assembly and facilitates the comparisons of processes among datasets. The DNCI was tested for robustness using simulations and applied to observational datasets comprising organismal groups with different trophic level and dispersal potential. Based on the robustness tests, the DNCI discriminated the respective contribution of niche and dispersal processes in pairwise comparisons of site groups with less than 40% and 30% differences in their taxa and site numbers, respectively. In the observational datasets, the DNCI suggested that dispersal rather than niche assembly was the dominant assembly process which, however, varied in intensity among organismal groups and study contexts, including spatial scale and ecosystem types. The proposed DNCI measures the relative strength of community assembly processes in a way that is simple, easily quantifiable and comparable across datasets. We discuss the strengths and weaknesses of the DNCI and provide perspectives for future research.Peer reviewe

Front. Plant Sci.

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