Applying the European hydroacoustic standard on fish abundance estimation (EN 15910)

Hydroacoustics is an internationally approved method to study fish for abundance estimates and behaviour to increase our understanding of aquatic ecosystems. In Europe and North- America, the need to compare results between years, lakes and countries has been recognized and as a consequence of this, acoustic methods are being standardized. To study how the European standard Water quality – Guidance on the estimation of fish abundance with mobile hydroacoustic methods (CEN 2014) was perceived by different users, a joint evaluation of the implementation of the standard was performed in 2014 by hydroacoustic experts from three European countries. In some parts of the standard the participants´ actions were different from what was described by the standard, and in some cases methods differed among the participants. A general explanation for most of these cases was that stable equipment performance and experience from discrete surveys reduce the need of controlling actions. We suggest that the results of this study should be considered at the revision of the standard (EN 15910) scheduled for 2017

Latitudinal variation in sexual dimorphism in life-history traits of a freshwater fish

Peer reviewe

Water Framework Directive Intercalibration: Central-Baltic Lake Fish fauna ecological assessment methods

The European Water Framework Directive (WFD) requires the national classifications of good ecological status to be harmonised through an intercalibration exercise. In this exercise, significant differences in status classification among Member States are harmonized by comparing and, if necessary, adjusting the good status boundaries of the national assessment methods. Intercalibration is performed for rivers, lakes, coastal and transitional waters, focusing on selected types of water bodies (intercalibration types), anthropogenic pressures and Biological Quality Elements. Intercalibration exercises are carried out in Geographical Intercalibration Groups - larger geographical units including Member States with similar water body types - and followed the procedure described in the WFD Common Implementation Strategy Guidance document on the intercalibration process (European Commission, 2011). The Technical report on the Water Framework Directive intercalibration describes in detail how the intercalibration exercise has been carried out for the water categories and biological quality elements. The Technical report is organized in volumes according to the water category (rivers, lakes, coastal and transitional waters), Biological Quality Element and Geographical Intercalibration group. This volume addresses the intercalibration of the Lake Central-Baltic Fish ecological assessment methods. Part A: This document comprises an overview and detailed descriptions of fish-based lake ecological assessment methods. Part B describes the construction of multiple pressure index in the Central-Baltic region. Part C describes the procedure and results of the boundary harmonisation of national fish-based lake assessment systemsJRC.D.2-Water and Marine Resource

Modelling of the LTDE-SD radionuclide diffusion experiment in crystalline rock at the Aspo Hard Rock Laboratory (Sweden)

This study shows a comparison and analysis of results from a modelling exercise concerning a field experiment involving the transport and retention of different radionuclide tracers in crystalline rock. This exercise was performed within the Swedish Nuclear Fuel and Waste Management Company (SKB) Task Force on Modelling of Groundwater Flow and Transport of Solutes (Task Force GWFTS). Task 9B of the Task Force GWFTS was the second subtask within Task 9 and focused on the modelling of experimental results from the Long Term Sorption Diffusion Experiment in situ tracer test. The test had been performed at a depth of about 410m in the Aspo Hard Rock Laboratory. Synthetic groundwater containing a cocktail of radionuclide tracers was circulated for 198 days on the natural surface of a fracture and in a narrow slim hole drilled in unaltered rock matrix. Overcoring of the rock after the end of the test allowed for the measurement of tracer distribution profiles in the rock from the fracture surface (A cores) and also from the slim hole (D cores). The measured tracer activities in the rock samples showed long profiles (several cm) for non-or weakly-sorbing tracers (Cl-36, Na-22), but also for many of the more strongly-sorbing radionuclides. The understanding of this unexpected feature was one of the main motivations for this modelling exercise. However, re-evaluation and revision of the data during the course of Task 9B provided evidence that the anomalous long tails at low activities for strongly sorbing tracers were artefacts due to cross-contamination during rock sample preparation. A few data points remained for Cs-137, Ba-133, Ni-63 and Cd-109, but most measurements at long distances from the tracer source (>10mm) were now below the reported detection limits. Ten different modelling teams provided results for this exercise, using different concepts and codes. The tracers that were finally considered were Na-22, Cl-36, Co-57, Ni-63, Ba-133, Cs-137, Cd-109, Ra-226 and Np-237. Three main types of models were used: i) analytical solutions to the transport-retention equations, ii) continuum -porous-medium numerical models, and iii) microstructure-based models accounting for small-scale heterogeneity (i.e. mineral grains, porosities and/or microfracture distributions) and potential centimetre-scale fractures. The modelling by the different teams led to some important conclusions, concerning for instance the presence of a disturbed zone (a few mm in thickness) next to the fracture surface and to the wall of the slim hole and the role of micro-fractures and cm-scale fractures in the transport of weakly sorbing tracers. These conclusions could be reached after the re-evaluation and revision of the experimental data (tracer profiles in the rock) and the analysis of the different sets of model results provided by the different teams.Peer reviewe

Positioning aquatic animals with acoustic transmitters

Geolocating aquatic animals with acoustic tags has been ongoing for decades, relying on the detection of acoustic signals at multiple receivers with known positions to calculate a 2D or 3D position, and ultimately recreate the path of an aquatic animal from detections at fixed stations.This method of underwater geolocation is evolving with new software and hardware options available to help investigators design studies and calculate positions using solvers based predominantly on time-difference-of-arrival and time-of-arrival.We provide an overview of the considerations necessary to implement positioning in aquatic acoustic telemetry studies, including how to design arrays of receivers, test performance, synchronize receiver clocks and calculate positions from the detection data. We additionally present some common positioning algorithms, including both the free open-source solvers and the 'black-box' methods provided by some manufacturers for calculating positions.This paper is the first to provide a comprehensive overview of methods and considerations for designing and implementing better positioning studies that will support users, and encourage further knowledge advances in aquatic systems

Intercalibration of the national classifications of ecological status for Central-Baltic Lakes: Biological Quality Element: Fish fauna: Part B and C

The European Water Framework Directive (WFD) requires the national classifications of good ecological status to be harmonised through an intercalibration exercise. In this exercise, significant differences in status classification among Member States are harmonized by comparing and, if necessary, adjusting the good status boundaries of the national assessment methods. Intercalibration is performed for rivers, lakes, coastal and transitional waters, focusing on selected types of water bodies (intercalibration types), anthropogenic pressures and Biological Quality Elements. Intercalibration exercises are carried out in Geographical Intercalibration Groups - larger geographical units including Member States with similar water body types - and followed the procedure described in the WFD Common Implementation Strategy Guidance document on the intercalibration process (European Commission, 2011). The Technical report on the Water Framework Directive intercalibration describes in detail how the intercalibration exercise has been carried out for the water categories and biological quality elements. The Technical report is organized in volumes according to the water category (rivers, lakes, coastal and transitional waters), Biological Quality Element and Geographical Intercalibration group. This volume addresses the intercalibration of the Lake Central-Baltic Fish ecological assessment methods. This volume on intercalibration of the Lake Central Baltic Fish ecological assessment methods is split into three parts: Part A, a document that provides an overview and detailed descriptions of fish-based lake ecological assessment methods. Parts B and C: This document comprises two Parts, B and C. Part B describes the construction of multiple pressure index in the Central-Baltic region. Part C describes the procedure and results of the boundary harmonisation of national fish-based lake assessment systems.  JRC.D.2-Water and Marine Resource

Speed Up of Volumetric Non-Local Transform-Domain Filter Utilising HPC Architecture

This paper presents a parallel implementation of a non-local transform-domain filter (BM4D). The effectiveness of the parallel implementation is demonstrated by denoising image series from computed tomography (CT) and magnetic resonance imaging (MRI). The basic idea of the filter is based on grouping and filtering similar data within the image. Due to the high level of similarity and data redundancy, the filter can provide even better denoising quality than current extensively used approaches based on deep learning (DL). In BM4D, cubes of voxels named patches are the essential image elements for filtering. Using voxels instead of pixels means that the area for searching similar patches is large. Because of this and the application of multi-dimensional transformations, the computation time of the filter is exceptionally long. The original implementation of BM4D is only single-threaded. We provide a parallel version of the filter that supports multi-core and many-core processors and scales on such versatile hardware resources, typical for high-performance computing clusters, even if they are concurrently used for the task. Our algorithm uses hybrid parallelisation that combines open multi-processing (OpenMP) and message passing interface (MPI) technologies and provides up to 283× speedup, which is a 99.65% reduction in processing time compared to the sequential version of the algorithm. In denoising quality, the method performs considerably better than recent DL methods on the data type that these methods have yet to be trained on

Applying the European hydroacoustic standard on fish abundance estimation (EN 15910) Survey experiences from three European countries

Hydroacoustics is an internationally approved method to study fish for abundance estimatesand behaviour to increase our understanding of aquatic ecosystems. In Europe and North-America, the need to compare results between years, lakes and countries has been recognizedand as a consequence of this, acoustic methods are being standardized. To study how theEuropean standard Water quality – Guidance on the estimation of fish abundance with mobilehydroacoustic methods (CEN 2014) was perceived by different users, a joint evaluationof the implementation of the standard was performed in 2014 by hydroacoustic experts fromthree European countries. In some parts of the standard the participants´ actions were differentfrom what was described by the standard, and in some cases methods differed among theparticipants. A general explanation for most of these cases was that stable equipment performanceand experience from discrete surveys reduce the need of controlling actions. Wesuggest that the results of this study should be considered at the revision of the standard (EN15910) scheduled for 2017

Can Energy Depletion of Wild Atlantic Salmon Kelts Negotiating Hydropower Facilities Lead to Reduced Survival?

Repeat spawners constitute an important component of Atlantic salmon populations, but survival of post-spawning individuals (kelts) are often compromised by anthropogenic structures such as hydropower plants (HPPs). Potential effects of HPPs include migration delays and associated increased energy depletion, which potentially results in increased overall mortality. We combined a detailed 3D hydraulic model with high-resolution 3D tracking of tagged kelts (length 73–104 cm) to obtain estimates of kelt movement through water. These estimates were then used in an energetics model to estimate hourly energy expenditure while negotiating the HPP area. Hourly kelt energy expenditure varied between 0.8 and 10.1 kJ × h−1 and was dependent on kelt length. Degree of additional energy depletion can amount to several percent of remaining energy content (our study indicates 4–5 percentage points) potentially leading to reduced post-spawning survival. In turn, this can nullify the iteroparous breeding strategy and jeopardize long-term stability and persistence of Atlantic salmon populations inhabiting HPP rivers