DarkHistory: A code package for calculating modified cosmic ionization and thermal histories with dark matter and other exotic energy injections

We present a new public Python package, DarkHistory, for computing the effects of dark matter annihilation and decay on the temperature and ionization history of the early universe. DarkHistory simultaneously solves for the evolution of the free electron fraction and gas temperature, and for the cooling of annihilation/decay products and the secondary particles produced in the process. Consequently, we can self-consistently include the effects of both astrophysical and exotic sources of heating and ionization, and automatically take into account backreaction, where modifications to the ionization/temperature history in turn modify the energy-loss processes for injected particles. We present a number of worked examples, demonstrating how to use the code in a range of different configurations, in particular for arbitrary dark matter masses and annihilation/decay final states. Possible applications of DarkHistory include mapping out the effects of dark matter annihilation/decay on the global 21cm signal and the epoch of reionization, as well as the effects of exotic energy injections other than dark matter annihilation/decay. The code is available at https://github.com/hongwanliu/DarkHistory with documentation at https://darkhistory.readthedocs.io . Data files required to run the code can be downloaded at https://doi.org/10.7910/DVN/DUOUWA .Comment: 40 pages, 17 figure

A study of symmetry breaking in a relativistic Bose gas using the contraction algorithm

A relativistic Bose gas at finite density suffers from a sign problem that makes direct numerical simulations not feasible. One possible solution to the sign problem is to re-express the path integral in terms of Lefschetz thimbles. Using this approach we study the relativistic Bose gas both in the symmetric phase (low-density) and the spontaneously broken phase (high-density). In the high-density phase we break explicitly the symmetry and determine the dependence of the order parameter on the breaking. We study the relative contributions of the dominant and sub-dominant thimbles in this phase. We find that the sub-dominant thimble only contributes substantially when the explicit symmetry breaking is small, a regime that is dominated by finite volume effects. In the regime relevant for the thermodynamic limit, this contribution is negligible.Comment: 12 pages, 6 figures, 1 tabl

Exotic energy injection in the early universe II: CMB spectral distortions and constraints on light dark matter

We calculate the post-recombination contribution to the Cosmic Microwave Background (CMB) spectral distortion due to general exotic energy injections, including dark matter (DM) decaying or annihilating to Standard Model particles. Upon subtracting the background distortion that would be present even without such energy injections, we find residual distortions that are still potentially large enough to be detectable by future experiments such as PIXIE. The distortions also have a high-energy spectral feature that is a unique signature of the injection of high-energy particles. We present a calculation of the global ionization history in the presence of decaying dark matter with sub-keV masses, and also show that previous calculations of the global ionization history in the presence of energy injection are not significantly modified by these additional spectral distortions. Our improved treatment of low-energy electrons allows us to extend calculations of the CMB anisotropy constraints for decaying DM down to arbitrarily low masses. We also recast these bounds as constraints on the coupling of axion-like particles to photons.Comment: 23 pages, 16 figure

Exotic energy injection in the early universe I: a novel treatment for low-energy electrons and photons

Decaying or annihilating dark matter and other exotic energy injections can modify the spectrum of the universe's photon bath, resulting in e.g. new contributions to spectral distortions of the cosmic microwave background blackbody spectrum and modifications to the temperature and ionization history of the universe. Here, we present an improved version of the $\texttt{DarkHistory}$ code, which is now capable of consistently calculating the spectrum of low-energy photons by properly treating the interactions of these photons with the levels of hydrogen atoms. Other changes to the code include a more detailed treatment of energy deposition by low-energy electrons, and spectral distortions from heating of the intergalactic medium. All of the improvements we have made to $\texttt{DarkHistory}$ are publicly available.Comment: 29 pages, 12 figure

Abelian Higgs Hair for Black Holes

We find evidence for the existence of solutions of the Einstein and Abelian Higgs field equations describing a black hole pierced by a Nielsen-Olesen vortex. This situation falls outside the scope of the usual no-hair arguments due to the non-trivial topology of the vortex configuration and the special properties of its energy-momentum tensor. By a combination of numerical and perturbative techniques we conclude that the black hole horizon has no difficulty in supporting the long range fields of the Nielsen Olesen string. Moreover, the effect of the vortex can in principle be measured from infinity, thus justifying its characterization as black hole ``hair".Comment: 31 pages, plain tex, 7 figures included. minor corrections and references adde

Role of Cationic Side Chains in the Antimicrobial Activity of C18G.

Antimicrobial peptides (AMPs) have been an area of great interest, due to the high selectivity of these molecules toward bacterial targets over host cells and the limited development of bacterial resistance to these molecules throughout evolution. The peptide C18G has been shown to be a selective, broad spectrum AMP with a net +8 cationic charge from seven lysine residues in the sequence. In this work, the cationic Lys residues were replaced with other natural or non-proteinogenic cationic amino acids: arginine, histidine, ornithine, or diaminopropionic acid. These changes vary in the structure of the amino acid side chain, the identity of the cationic moiety, and the pKa of the cationic group. Using a combination of spectroscopic and microbiological methods, the influence of these cationic groups on membrane binding, secondary structure, and antibacterial activity was investigated. The replacement of Lys with most other cationic residues had, at most, 2-fold effects on minimal inhibitory concentration against a variety of Gram-positive and Gram-negative bacteria. However, the peptide containing His as the cationic group showed dramatically reduced activity. All peptide variants retained the ability to bind lipid vesicles and showed clear preference for binding vesicles that contained anionic lipids. Similarly, all peptides adopted a helical conformation when bound to lipids or membrane mimetics, although the peptide containing diaminopropionic acid exhibited a decreased helicity. The peptides exhibited a wider variety of activity in the permeabilization of bacterial membranes, with peptides containing Lys, Arg, or Orn being the most broadly active. In all, the antibacterial activity of the C18G peptide is generally tolerant to changes in the structure and identity of the cationic amino acids, yielding new possibilities for design and development of AMPs that may be less susceptible to immune and bacterial recognition or in vivo degradation

The relationship between γ Cassiopeiae’s X-ray emission and its circumstellar environment

γ Cas is the prototypical classical Be star and is recently best known for its variable hard X-ray emission. To elucidate the reasons for this emission, we mounted a multiwavelength campaign in 2010 centered around four XMM-Newton observations. The observational techniques included long baseline optical interferometry (LBOI) from two instruments at CHARA, photometry carried out by an automated photometric telescope and Hα observations. Because γ Cas is also known to be in a binary, we measured radial velocities from the Hα line and redetermined its period as 203.55 ± 0.20 days and its eccentricity as near zero. The LBOI observations suggest that the star’s decretion disk was axisymmetric in 2010, has an system inclination angle near 45°, and a larger radius than previously reported. In addition, the Be star began an “outburst” at the beginning of our campaign, made visible by a brightening and reddening of the disk during our campaign and beyond. Our analyses of the new high resolution spectra disclosed many attributes also found from spectra obtained in 2001 (Chandra) and 2004 (XMM-Newton). As well as a dominant hot ( ≈ 14 keV) thermal component, the familiar attributes included: (i) a fluorescent feature of Fe K even stronger than observed at previous times; (ii) strong lines of N VII and Ne XI lines indicative of overabundances; and (iii) a subsolar Fe abundance from K-shell lines but a solar abundance from L-shell ions. We also found that two absorption columns are required to fit the continuum. While the first one maintained its historical average of 1 × 1021 cm-2, the second was very large and doubled to 7.4 × 1023 cm-2 during our X-ray observations. Although we found no clear relation between this column density and orbital phase, it correlates well with the disk brightening and reddening both in the 2010 and earlier observations. Thus, the inference from this study is that much (perhaps all?) of the X-ray emission from this source originates behind matter ejected by γ Cas into our line of sight