Donor-strand exchange in chaperone-assisted pilus assembly revealed in atomic detail by molecular dynamics

Adhesive multi-subunit fibres are assembled on the surface of many pathogenic bacteria via the chaperone-usher pathway. In the periplasm, a chaperone donates a β-strand to a pilus subunit to complement its incomplete immunoglobulin-like fold. At the outer membrane, this is replaced with a β-strand formed from the N-terminal extension (Nte) of an incoming pilus subunit by a donorstrand exchange (DSE) mechanism. This reaction has previously been shown to proceed via a concerted mechanism, in which the Nte interacts with the chaperone:subunit complex before the chaperone has been displaced, forming a ternary intermediate. Thereafter, the pilus and chaperone β-strands have been postulated to undergo a strand swap by a ‘zip-in-zip-out’ mechanism, whereby the chaperone strand zips out, residue by residue, as the Nte simultaneously zips in. Here, molecular dynamics simulations have been used to probe the DSE mechanism during formation of the Salmonella enterica Saf pilus at an atomic level, allowing the direct investigation of the zip-inzip- out hypothesis. The simulations provide an explanation of how the incoming Nte is able to dock and initiate DSE due to inherent dynamic fluctuations within the chaperone:subunit complex. The chaperone donor-strand is shown to unbind from the pilus subunit residue by residue, in direct support of the zip-in-zip-out hypothesis. In addition, an interaction of a residue towards the Nterminus of the Nte with a specific binding pocket (P*) on the adjacent pilus subunit is shown to stabilise the DSE product against unbinding, which also proceeds by a zippering mechanism. Together, the study provides an in-depth picture of DSE, including the first insights into the molecular events occurring during the zip-in-zip-out mechanism

Microbial interactions with phosphorus containing glasses representative of vitrified radioactive waste

The presence of phosphorus in borosilicate glass (at 0.1 – 1.3 mol% P2O5) and in iron-phosphate glass (at 53 mol% P2O5) stimulated the growth and metabolic activity of anaerobic bacteria in model systems. Dissolution of these phosphorus containing glasses was either inhibited or accelerated by microbial metabolic activity, depending on the solution chemistry and the glass composition. The breakdown of organic carbon to volatile fatty acids increased glass dissolution. The interaction of microbially reduced Fe(II) with phosphorus-containing glass under anoxic conditions decreased dissolution rates, whereas the interaction of Fe(III) with phosphorus-containing glass under oxic conditions increased glass dissolution. Phosphorus addition to borosilicate glasses did not significantly affect the microbial species present, however, the diversity of the microbial community was enhanced on the surface of the iron phosphate glass. Results demonstrate the potential for microbes to influence the geochemistry of radioactive waste disposal environments with implication for wasteform durability

A new species of Dichaea (Orchidaceae) for northern Brazil

Dichaea é o maior gênero da subtribo Zygopetalinae e possui sua maior diversidade de espécies na América do Sul. Diante disto, este trabalho teve o objetivo de descrever uma nova espécie de Dichaea ocorrente na região norte do Brasil, Dichaea bragae Valsko, Krahl & Holanda. A nova espécie foi coleta ao norte de Manaus em área de floresta ombrifila e floresceu em cultivo. O epíteto é em homenagem ao Dr. Pedro Ivo Soares Braga (in memorian), orquidilogo que realizou vários estudos na Amazônia brasileira. A nova espécie possui afinidade com espécies de Dichaea serão Dichaeopsis, contudo são diferenciadas vegetativamente e na morfologia do labelo

The effect on melanoma risk of genes previously associated with telomere length.

Telomere length has been associated with risk of many cancers, but results are inconsistent. Seven single nucleotide polymorphisms (SNPs) previously associated with mean leukocyte telomere length were either genotyped or well-imputed in 11108 case patients and 13933 control patients from Europe, Israel, the United States and Australia, four of the seven SNPs reached a P value under .05 (two-sided). A genetic score that predicts telomere length, derived from these seven SNPs, is strongly associated (P = 8.92x10(-9), two-sided) with melanoma risk. This demonstrates that the previously observed association between longer telomere length and increased melanoma risk is not attributable to confounding via shared environmental effects (such as ultraviolet exposure) or reverse causality. We provide the first proof that multiple germline genetic determinants of telomere length influence cancer risk.This is the final version of the article. It first appeared from Oxford University Press via http://dx.doi.org/10.1093/jnci/dju26

The Majorana Neutrinoless Double-Beta Decay Experiment

The proposed Majorana double-beta decay experiment is based on an array of segmented intrinsic Ge detectors with a total mass of 500 kg of Ge isotopically enriched to 86% in 76Ge. A discussion is given of background reduction by: material selection, detector segmentation, pulse shape analysis, and electro-formation of copper parts and granularity. Predictions of the experimental sensitivity are given. For an experimental running time of 10 years over the construction and operation of Majorana, a half-life sensitivity of ~4x10^27 y (neutrinoless) is predicted. This corresponds to an effective Majorana mass of the electron neutrino of ~0.03-0.04 eV, according to recent QRPA and RQRPA matrix element calculations.Comment: 10 pages, 7 figure

Reproductive biology of Cattleya eldorado, a species of Orchidaceae from the Amazonian white sand campinas

The orchid plants are highly prized for their lush exotic flowers. It is the largest plant family with more than 24000 species, which indicates a high diversity of forms and adaptations to different environments, including the capacity to attract, deceive and manipulate visitors involved in cross-pollination. Cattleya eldorado occurs in areas of white sand campinas, a typical vegetation type of the Amazon region, which is under strong anthropogenic pressure. This work's main objectives to know the biological processes of C. eldorado providing subsidies to maintain and manage it in its natural habitat. This study was conducted from 2000 to 2006 in the Campina Biological Reserve, during its flowering period. C. eldorado is an epiphytic orchid species that has the melittophyly syndrome and is adapted to its pollinator, the bee Eulaema mocsaryi recognizing their flowers by smell and by visual stimuli, through their color and reflection of ultraviolet light. C. eldorado is self-compatible, even if it requires a pollinating agent for the transfer of the pollinarium until its deposition in the stigmatic cavity of the flower.", 'enAs Orchidaceae são muito apreciadas por suas flores exóticas e exuberantes. É a maior família de plantas apresentando mais de 24000 espécies, o que denota uma alta diversidade de formas e adaptações a diferentes ambientes, como também para atração, engano e manipulação de visitantes na realização da polinização cruzada. Cattleya eldorado ocorre em áreas de campinas, que são formações vegetais típicas da região amazônica, que se encontram sob forte ação antrópica. Este trabalho tem como um de seus principais objetivos conhecer parte dos processos biológicos de C. eldorado fornecendo subsídios para conservá-la e manejá-la em seu habitat natural. Este estudo foi desenvolvido na Reserva Biológica de Campina, de 2000 a 2006, durante a sua floração. C. eldorado é uma espécie epifítica que apresenta a síndrome de melitofilia, estando adaptada ao seu polinizador, a abelha Eulaema mocsaryi, que reconhece suas flores pelo odor e pelo estímulo visual através de sua coloração e reflexão de luz ultravioleta. C. eldorado é uma espécie autocompatível, embora necessite de um agente polinizador para a transferência do polinário até sua deposição na cavidade estigmática da flor