Modeling of Groundwater Flow and Radionuclide Transport at the Climax Mine sub-CAU, Nevada Test Site

The Yucca Flat-Climax Mine Corrective Action Unit (CAU) on the Nevada Test Site comprises 747 underground nuclear detonations, all but three of which were conducted in alluvial, volcanic, and carbonate rocks in Yucca Flat. The remaining three tests were conducted in the very different hydrogeologic setting of the Climax Mine granite stock located in Area 15 at the northern end of Yucca Flat. As part of the Corrective Action Investigation (CAI) for the Yucca Flat-Climax Mine CAU, models of groundwater flow and radionuclide transport will be developed for Yucca Flat. However, two aspects of these CAU-scale models require focused modeling at the northern end of Yucca Flat beyond the capability of these large models. First, boundary conditions and boundary flows along the northern reaches of the Yucca Flat-Climax Mine CAU require evaluation to a higher level of detail than the CAU-scale Yucca Flat model can efficiently provide. Second, radionuclide fluxes from the Climax tests require analysis of flow and transport in fractured granite, a unique hydrologic environment as compared to Yucca Flat proper. This report describes the Climax Mine sub-CAU modeling studies conducted to address these issues, with the results providing a direct feed into the CAI for the Yucca Flat-Climax Mine CAU. Three underground nuclear detonations were conducted for weapons effects testing in the Climax stock between 1962 and 1966: Hard Hat, Pile Driver, and Tiny Tot. Though there is uncertainty regarding the position of the water table in the stock, it is likely that all three tests were conducted in the unsaturated zone. In the early 1980s, the Spent Fuel Test-Climax (SFT-C) was constructed to evaluate the feasibility of retrievable, deep geologic storage of commercial nuclear reactor wastes. Detailed mapping of fractures and faults carried out for the SFT-C studies greatly expanded earlier data sets collected in association with the nuclear tests and provided invaluable information for subsequent modeling studies at Climax. The objectives of the Climax Mine sub-CAU work are to (1) provide simulated heads and groundwater flows for the northern boundaries of the Yucca Flat-Climax Mine CAU model, while incorporating alternative conceptualizations of the hydrogeologic system with their associated uncertainty, and (2) provide radionuclide fluxes from the three tests in the Climax stock using modeling techniques that account for groundwater flow in fractured granite. Meeting these two objectives required two different model scales. The northern boundary groundwater fluxes were addressed using the Death Valley Regional Flow System (DVRFS) model (Belcher, 2004) developed by the U.S. Geological Survey as a modeling framework, with refined hydrostratigraphy in a zone north of Yucca Flat and including Climax stock. Radionuclide transport was simulated using a separate model confined to the granite stock itself, but linked to regional groundwater flow through boundary conditions and calibration targets

Predictability of the quasi-biennial oscillation and its northern winter teleconnection on seasonal to decadal timescales

Journal ArticlePublished version used with permision of the publisher.The predictability of the quasi-biennial oscillation (QBO) is examined in initialized climate forecasts extending out to lead times of years. We use initialized retrospective predictions made with coupled ocean-atmosphere climate models that have an internally generated QBO. We demonstrate predictability of the QBO extending more than 3 years into the future, well beyond timescales normally associated with internal atmospheric processes. Correlation scores with observational analyses exceed 0.7 at a lead time of 12 months. We also examine the variation of predictability with season and QBO phase and find that skill is lowest in winter. An assessment of perfect predictability suggests that higher skill may be achievable through improved initialization and climate modeling of the QBO, although this may depend on the realism of gravity wave source parameterizations in the models. Finally, we show that skilful prediction of the QBO itself does not guarantee predictability of the extratropical winter teleconnection that is important for surface winter climate prediction. Key Points The QBO is skilfully predicted in seasonal-decadal forecast systems Further improvements in predictions of the QBO are possible The QBO winter surface teleconnection is reproduced with mixed succes

HaploReg: a resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants

The resolution of genome-wide association studies (GWAS) is limited by the linkage disequilibrium (LD) structure of the population being studied. Selecting the most likely causal variants within an LD block is relatively straightforward within coding sequence, but is more difficult when all variants are intergenic. Predicting functional non-coding sequence has been recently facilitated by the availability of conservation and epigenomic information. We present HaploReg, a tool for exploring annotations of the non-coding genome among the results of published GWAS or novel sets of variants. Using LD information from the 1000 Genomes Project, linked SNPs and small indels can be visualized along with their predicted chromatin state in nine cell types, conservation across mammals and their effect on regulatory motifs. Sets of SNPs, such as those resulting from GWAS, are analyzed for an enrichment of cell type-specific enhancers. HaploReg will be useful to researchers developing mechanistic hypotheses of the impact of non-coding variants on clinical phenotypes and normal variation. The HaploReg database is available at http://compbio.mit.edu/HaploReg.National Institutes of Health (U.S.) (R01-HG004037)National Institutes of Health (U.S.) (RC1-HG005334)National Science Foundation (U.S.) (HG005334

Sistema sulco/camalhão para irrigação e drenagem em áreas de várzea.

SISTEMA SULCO/CAMALHÃO PARA IRRIGAÇÃO E DRENAGEM EM ÁREAS DE VÁRZEA - A soja e o milho são as principais culturas produtoras de grãos utilizadas na diversificação do sistema de produção nas várzeas do Rio Grande do Sul, em rotação com o arroz irrigado. Os principais fatores limitantes, para que estas culturas sejam produtivas e rentáveis neste sistema, são a deficiente drenagem natural do solo e a ocorrência de freqüentes períodos de estiagem, acarretando alternância entre o excesso e o déficit de umidade no solo. A Embrapa Clima Temperado testou e validou a técnica sulco/camalhão em áreas sistematizadas com e sem declive, para estes cultivos, com resultados bastante promissores. O sistema consiste na estruturação da lavoura para a irrigação por sulcos, obtendo-se, ao mesmo tempo, grande benefício em drenagem, com o cultivo sobre os camalhões formados entre os sulcos. Esta técnica, como sistema complementar de drenagem superficial do solo, mostrou-se muito eficiente mesmo nos cultivos em áreas sistematizadas sem declive, onde não existe um gradiente para escoamento superficial da água. O principal requisito para a irrigação por sulcos é que o terreno tenha uma declividade constante e uniforme, requerendo geralmente a sistematização do terreno. Para irrigações mais uniformes e eficientes, a declividade deve variar de 0,10% a 0,50%, sendo que valores intermediários entre 0,15% e 0,30% são os mais indicadosbitstream/item/31294/1/comunicado-165.pd

Correction: Contribution of the Cpx envelope stress system to metabolism and virulence regulation in Salmonella enterica serovar Typhimurium

[This corrects the article DOI: 10.1371/journal.pone.0211584.]

The Migration of Elites in a Borderless World: Citizenship as an Incentive for Professionals and Managers?

Der Artikel geht der Frage nach, inwiefern die geöffneten Türen für die Immigration Hochqualifizierter in den OECD-Ländern tatsächlich zu einer verstärkten Migrationsbewegung führen. Die Analyse von Daten zu Eliten- und Hochqualifiziertenmigration in Ostasien, Europa und den USA führt zu dem Ergebnis, dass diese dem Muster einer „brain circulation“ folgt und die Staatsbürgerrechte dabei keine entscheidende Rolle spielen

High temporal resolution parametric MRI monitoring of the initial ischemia/reperfusion phase in experimental acute kidney injury

Ischemia/reperfusion (I/R) injury, a consequence of kidney hypoperfusion or temporary interruption of blood flow is a common cause of acute kidney injury (AKI). There is an unmet need to better understand the mechanisms operative during the initial phase of ischemic AKI. Non-invasive parametric magnetic resonance imaging (MRI) may elucidate spatio-temporal pathophysiological changes in the kidney by monitoring the MR relaxation parameters T* and T, which are known to be sensitive to blood oxygenation. The aim of our study was to establish the technical feasibility of fast continuous T*/T mapping throughout renal I/R. MRI was combined with a remotely controlled I/R model and a segmentation model based semi-automated quantitative analysis. This technique enabled the detailed assessment of changes in all kidney regions during ischemia and early reperfusion. Significant changes in T* and T were observed shortly after induction of renal ischemia and during the initial reperfusion phase. Our study demonstrated for the first time that continuous and high temporal resolution parametric MRI is feasible for monitoring and characterization of I/R induced AKI in rats. This technique may help in the identification of the timeline of key events responsible for development of renal damage in hypoperfusion-induced AKI

UniPROBE: an online database of protein binding microarray data on protein–DNA interactions

The UniPROBE (Universal PBM Resource for Oligonucleotide Binding Evaluation) database hosts data generated by universal protein binding microarray (PBM) technology on the in vitro DNA-binding specificities of proteins. This initial release of the UniPROBE database provides a centralized resource for accessing comprehensive PBM data on the preferences of proteins for all possible sequence variants (‘words’) of length k (‘k-mers’), as well as position weight matrix (PWM) and graphical sequence logo representations of the k-mer data. In total, the database hosts DNA-binding data for over 175 nonredundant proteins from a diverse collection of organisms, including the prokaryote Vibrio harveyi, the eukaryotic malarial parasite Plasmodium falciparum, the parasitic Apicomplexan Cryptosporidium parvum, the yeast Saccharomyces cerevisiae, the worm Caenorhabditis elegans, mouse and human. Current web tools include a text-based search, a function for assessing motif similarity between user-entered data and database PWMs, and a function for locating putative binding sites along user-entered nucleotide sequences. The UniPROBE database is available at http://thebrain.bwh.harvard.edu/uniprobe/