234 research outputs found

    Cloud-based Medical Image Collection Database with Automated Annotation

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    Typical medical image annotation systems use manual annotation or complex proprietary software such as computer-assisted-diagnosis. A more objective approach is required to achieve generalised Content Based Image Retrieval (CBIR) functionality. The Automated Medical Image Collection Annotation (AMICA) toolkit described here addresses this need. A range of content analysis functions are provided to tag images and image regions. The user uploads a DICOM file to an online portal and the software finds and displays images that have similar characteristics. AMICA has been developed to run in the Microsoft cloud environment using the Windows Azure platform, to cater for the storage requirements of typical large medical image databases

    A toolbox for animal call recognition

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    Monitoring the natural environment is increasingly important as habit degradation and climate change reduce theworld’s biodiversity.We have developed software tools and applications to assist ecologists with the collection and analysis of acoustic data at large spatial and temporal scales.One of our key objectives is automated animal call recognition, and our approach has three novel attributes. First, we work with raw environmental audio, contaminated by noise and artefacts and containing calls that vary greatly in volume depending on the animal’s proximity to the microphone. Second, initial experimentation suggested that no single recognizer could dealwith the enormous variety of calls. Therefore, we developed a toolbox of generic recognizers to extract invariant features for each call type. Third, many species are cryptic and offer little data with which to train a recognizer. Many popular machine learning methods require large volumes of training and validation data and considerable time and expertise to prepare. Consequently we adopt bootstrap techniques that can be initiated with little data and refined subsequently. In this paper, we describe our recognition tools and present results for real ecological problems

    Visual threads: the benefits of multithreading in visual programming languages

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    technical reportAfter working with the CWave visual programming language, we discovered that many of our target domains required the ability to define parallel computations within a program. CWave has a strongly hierarchical model of computation, so it seemed like adding the ability to take a part of the hierarchy and execute it in parallel would provide a good way of solving the problem. This led us to the concept of the Visual Thread and its associated components. Effectively, the Visual Thread allows the programmer to specify a part of the hierarchy and execute that part in parallel with the rest of program. We have used this implementation in several domains and demonstrated that it allows easy mapping of real world problems into our language. It eliminates most of the complexities often associated with programming parallel applications. We have also used a first prototype of our code generation system to translate CWave into Promela which allows us to verify correctness properties of the programs

    The biogenesis and function of nucleosome arrays

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    Numerous chromatin remodeling enzymes position nucleosomes in eukaryotic cells. Aside from these factors, transcription, DNA sequence, and statistical positioning of nucleosomes also shape the nucleosome landscape. The precise contributions of these processes remain unclear due to their functional redundancy in vivo. By incisive genome engineering, we radically decreased their redundancy in Saccharomyces cerevisiae. The transcriptional machinery strongly disrupts evenly spaced nucleosomes. Proper nucleosome density and DNA sequence are critical for their biogenesis. The INO80 remodeling complex helps space nucleosomes in vivo and positions the first nucleosome over genes in an H2A.Z-independent fashion. INO80 requires its Arp8 subunit but unexpectedly not the Nhp10 module for spacing. Cells with irregularly spaced nucleosomes suffer from genotoxic stress including DNA damage, recombination and transpositions. We derive a model of the biogenesis of the nucleosome landscape and suggest that it evolved not only to regulate but also to protect the genome

    NATO und NATO-Osterweiterung: Pro und contra in Beiträgen

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    Kontroverse Debatte zur Ost-Erweiterung der NATO in der Mitte der 1990er Jahren.:- Erich Hocke: Osterweiterung der NATO - Weg zu einem europäischen Sicherheitssystem? - Dietrich von der Planitz: Die neue NATO. - Entwicklung der Allianz seit 1990. Tendenzen für die nahe Zukunft. - Ernst Woit: Osterweiterung der NATO. Interessen, Ziele, Konsequenzen. - Erich Hocke: Modell Matrjoschka-Puppe. Eine Nachbetrachtung zur Berliner NATO-Tagung. (Aus Wochenzeitung 'Freitag'

    ISWI Remodelling of Physiological Chromatin Fibres Acetylated at Lysine 16 of Histone H4

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    ISWI is the catalytic subunit of several ATP-dependent chromatin remodelling factors that catalyse the sliding of nucleosomes along DNA and thereby endow chromatin with structural flexibility. Full activity of ISWI requires residues of a basic patch of amino acids in the N-terminal 'tail' of histone H4. Previous studies employing oligopeptides and mononucleosomes suggested that acetylation of the H4 tail at lysine 16 (H4K16) within the basic patch may inhibit the activity of ISWI. On the other hand, the acetylation of H4K16 is known to decompact chromatin fibres. Conceivably, decompaction may enhance the accessibility of nucleosomal DNA and the H4 tail for ISWI interactions. Such an effect can only be evaluated at the level of nucleosome arrays. We probed the influence of H4K16 acetylation on the ATPase and nucleosome sliding activity of Drosophila ISWI in the context of defined, in vitro reconstituted chromatin fibres with physiological nucleosome spacing and linker histone content. Contrary to widespread expectations, the acetylation did not inhibit ISWI activity, but rather stimulated ISWI remodelling under certain conditions. Therefore, the effect of H4K16 acetylation on ISWI remodelling depends on the precise nature of the substrate

    Myosin Va’s adaptor protein melanophilin enforces track selection on the microtubule and actin networks in vitro

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    Significance Inner organization of eukaryotic cells intimately depends on the active transport of diverse intracellular cargo on the ubiquitous actin and microtubule networks. The underlying mechanisms of such directional transport processes have been of outstanding interest. We studied a motor complex composed of Rab27a, melanophilin, and myosin Va and found, surprisingly, that the adaptor protein melanophilin toggled the binding preference toward actin or microtubules in vitro. Our results offer unexpected mechanistic insights into biasing the directionality of a moving organelle on the cytoskeleton through phospho-targeting the adaptor protein rather than its motor in vivo.</jats:p

    Mulchen von Maisstoppeln: Optimierung des Mulchereinsatzes zur wirksamen Bekämpfung von Fusariumerkrankungen und Maiszünslerbefall im pfluglosen Ackerbau

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    Zur wirksamen Bekämpfung von Fusariumerkrankungen und Maiszünslerbefall im pfluglosen Ackerbau muss der Mulchereinsatz optimiert werden. Der Bericht fasst die wichtigsten Ergebnisse von zweijährigen Mulchversuchen von Maisstoppelflächen zusammen. Es werden Aussagen zum Mulcherfolg, Leistungsbedarf und Werkzeugverschleiß getroffen. Außerdem werden Möglichkeiten zur Einsatzoptimierung von derzeit verfügbaren Mulchsystemen und das Potenzial einer Befahrungsplanung aufgezeigt. Die Veröffentlichung wendet sich an Landwirte und Landtechnikhersteller
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