Effects of temporal floral resource availability and non-crop habitats on broad bean pollination

Context Flowering plants can enhance wild insect populations and their pollination services to crops in agricultural landscapes, especially when they flower before the focal crop. However, characterizing the temporal availability of specific floral resources is a challenge. Objectives Developing an index for the availability of floral resources at the landscape scale according to the specific use by a pollinator. Investigating whether detailed and temporally-resolved floral resource maps predict pollination success of broad bean better than land cover maps. Methods We mapped plant species used as pollen source by bumblebees in 24 agricultural landscapes and developed an index of floral resource availability for different times of the flowering season. To measure pollination success, patches of broad bean (Vicia faba), a plant typically pollinated by bumblebees, were exposed in the center of selected landscapes. Results Higher floral resource availability before bean flowering led to enhanced seed set. Floral resource availability synchronous to broad bean flowering had no effect. Seed set was somewhat better explained by land cover maps than by floral resource availability, increasing with urban area and declining with the cover of arable land. Conclusions The timing of alternative floral resource availability is important for crop pollination. The higher explanation of pollination success by land cover maps than by floral resource availability indicates that additional factors such as habitat disturbance and nesting sites play a role in pollination. Enhancing non-crop woody plants in agricultural landscapes as pollen sources may ensure higher levels of crop pollination by wild pollinators such as bumblebees

A pan-European model of landscape potential to support natural pest control services

Pest control by natural enemies (natural pest control) is an important regulating ecosystem service with significant implications for the sustainability of agro-ecosystems. The presence of semi-natural habitats and landscape heterogeneity are key determinants of the delivery of this service. However, to date, synthetic and consistent indicators at large scales are lacking. We developed a pan-European, spatially-explicit model to map and assess the landscape potential to sustain natural pest control. The model considers landscape composition in terms of semi-natural habitats types, abundance, spatial configuration and distance from the focal field. It combines recent high-resolution geospatial layers with empirical results from extensive field surveys measuring the specific contribution of different semi-natural habitats to support insects flying enemies providing natural pest control. The resulting maps facilitate a comparison of the relative biological control potential of different areas and show that currently a large proportion of high-productive agricultural areas in Europe has low potential. The obtained indicator can inform the formulation of policies and planning strategies aimed at increasing biodiversity and ecosystem services and can be used to assess trade-offs between different services. Potential fields of application include the Common Agricultural Policy and the EU Biodiversity Strategy, in particular the implementation of Green Infrastructure

Identification and validation of potential new biomarkers for prostate cancer diagnosis and prognosis using 2D-DIGE and MS

This study was designed to identify and validate potential new biomarkers for prostate cancer and to distinguish patients with and without biochemical relapse. Prostate tissue samples analyzed by 2D-DIGE (two-dimensional difference in gel electrophoresis) and mass spectrometry (MS) revealed downregulation of secernin-1 (P < 0.044) in prostate cancer, while vinculin showed significant upregulation (P < 0.001). Secernin-1 overexpression in prostate tissue was validated using Western blot and immunohistochemistry while vinculin expression was validated using immunohistochemistry. These findings indicate that secernin-1 and vinculin are potential new tissue biomarkers for prostate cancer diagnosis and prognosis, respectively. For validation, protein levels in urine were also examined by Western blot analysis. Urinary vinculin levels in prostate cancer patients were significantly higher than in urine from nontumor patients (P = 0.006). Using multiple reaction monitoring-MS (MRM-MS) analysis, prostatic acid phosphatase (PAP) showed significant higher levels in the urine of prostate cancer patients compared to controls (P = 0.012), while galectin-3 showed significant lower levels in the urine of prostate cancer patients with biochemical relapse, compared to those without relapse (P = 0.017). Three proteins were successfully differentiated between patients with and without prostate cancer and patients with and without relapse by using MRM. Thus, this technique shows promise for implementation as a noninvasive clinical diagnostic technique

The emergence of functional microcircuits in visual cortex.

Sensory processing occurs in neocortical microcircuits in which synaptic connectivity is highly structured and excitatory neurons form subnetworks that process related sensory information. However, the developmental mechanisms underlying the formation of functionally organized connectivity in cortical microcircuits remain unknown. Here we directly relate patterns of excitatory synaptic connectivity to visual response properties of neighbouring layer 2/3 pyramidal neurons in mouse visual cortex at different postnatal ages, using two-photon calcium imaging in vivo and multiple whole-cell recordings in vitro. Although neural responses were already highly selective for visual stimuli at eye opening, neurons responding to similar visual features were not yet preferentially connected, indicating that the emergence of feature selectivity does not depend on the precise arrangement of local synaptic connections. After eye opening, local connectivity reorganized extensively: more connections formed selectively between neurons with similar visual responses and connections were eliminated between visually unresponsive neurons, but the overall connectivity rate did not change. We propose a sequential model of cortical microcircuit development based on activity-dependent mechanisms of plasticity whereby neurons first acquire feature preference by selecting feedforward inputs before the onset of sensory experience--a process that may be facilitated by early electrical coupling between neuronal subsets--and then patterned input drives the formation of functional subnetworks through a redistribution of recurrent synaptic connections

Drug sensitivity profiling of 3D tumor tissue cultures in the pediatric precision oncology program INFORM

The international precision oncology program INFORM enrolls relapsed/refractory pediatric cancer patients for comprehensive molecular analysis. We report a two-year pilot study implementing ex vivo drug sensitivity profiling (DSP) using a library of 75–78 clinically relevant drugs. We included 132 viable tumor samples from 35 pediatric oncology centers in seven countries. DSP was conducted on multicellular fresh tumor tissue spheroid cultures in 384-well plates with an overall mean processing time of three weeks. In 89 cases (67%), sufficient viable tissue was received; 69 (78%) passed internal quality controls. The DSP results matched the identified molecular targets, including BRAF, ALK, MET, and TP53 status. Drug vulnerabilities were identified in 80% of cases lacking actionable (very) high-evidence molecular events, adding value to the molecular data. Striking parallels between clinical courses and the DSP results were observed in selected patients. Overall, DSP in clinical real-time is feasible in international multicenter precision oncology programs

Drug sensitivity profiling of 3D tumor tissue cultures in the pediatric precision oncology program INFORM

The international precision oncology program INFORM enrolls relapsed/refractory pediatric cancer patients for comprehensive molecular analysis. We report a two-year pilot study implementing ex vivo drug sensitivity profiling (DSP) using a library of 75-78 clinically relevant drugs. We included 132 viable tumor samples from 35 pediatric oncology centers in seven countries. DSP was conducted on multicellular fresh tumor tissue spheroid cultures in 384-well plates with an overall mean processing time of three weeks. In 89 cases (67%), sufficient viable tissue was received; 69 (78%) passed internal quality controls. The DSP results matched the identified molecular targets, including BRAF, ALK, MET, and TP53 status. Drug vulnerabilities were identified in 80% of cases lacking actionable (very) high-evidence molecular events, adding value to the molecular data. Striking parallels between clinical courses and the DSP results were observed in selected patients. Overall, DSP in clinical real-time is feasible in international multicenter precision oncology programs.Peer reviewe

Genome Sequencing of SHH Medulloblastoma Predicts Genotype-Related Response to Smoothened Inhibition

SummarySmoothened (SMO) inhibitors recently entered clinical trials for sonic-hedgehog-driven medulloblastoma (SHH-MB). Clinical response is highly variable. To understand the mechanism(s) of primary resistance and identify pathways cooperating with aberrant SHH signaling, we sequenced and profiled a large cohort of SHH-MBs (n = 133). SHH pathway mutations involved PTCH1 (across all age groups), SUFU (infants, including germline), and SMO (adults). Children >3 years old harbored an excess of downstream MYCN and GLI2 amplifications and frequent TP53 mutations, often in the germline, all of which were rare in infants and adults. Functional assays in different SHH-MB xenograft models demonstrated that SHH-MBs harboring a PTCH1 mutation were responsive to SMO inhibition, whereas tumors harboring an SUFU mutation or MYCN amplification were primarily resistant

R script analysing pollen at the anther data

Data file used for the analysis "pollen.anther.csv", software R 3.2.2 (2015) used to create the file

Calculated pollen deposition per bee species group

Formulas used for the calculation from "R_script_SVD". Data used in the formulas from field data "handling.time_video2014.csv", "vis.rate_video2014.csv", "SVD.bee-species_pumpkin_2015.csv", one sheet per bee species group (d.bumble, d.honey, d.halictid). Microsoft Excel used to create the file