Spatial and temporal environmental heterogeneity induced by internal tides influences faunal patterns on vertical walls within a submarine canyon

Vertical walls of submarine canyons represent features of high conservation value that can provide natural areas of protection for vulnerable marine ecosystems under increasing anthropogenic pressure from deep-sea trawling. Wall assemblages are spatially heterogeneous, attributed to the high environmental heterogeneity over short spatial scales that is a typical feature of canyons. Effective management and conservation of these assemblages requires a deeper understanding of the processes that affect faunal distribution patterns. Canyons are recognised as sites of intensified hydrodynamic regimes, with focused internal tides enhancing near-bed currents, turbulent mixing and nepheloid layer production, which influence faunal distribution patterns. Faunal patterns also respond to broad-scale hydrodynamics and gradients in water mass properties (e.g. temperature, salinity, dissolved oxygen concentration). Oscillating internal tidal currents can advect such gradients, both vertically and horizontally along a canyon's walls. Here we take an interdisciplinary approach using biological, hydrodynamic and bathymetry-derived datasets to undertake a high-resolution analysis of a subset of wall assemblages within Whittard Canyon, North-East Atlantic. We investigate if, and to what extent, patterns in diversity and epibenthic assemblages on deep-sea canyon walls can be explained by spatial and temporal variability induced by internal tides. Vertical displacement of water mass properties by the internal tide was calculated from autonomous ocean glider and shipboard CTD observations. Spatial patterns in faunal assemblage structure were determined by cluster analysis and non-metric Multi-Dimensional Scaling plots. Canonical Redundancy Analysis and Generalised Linear Models were then used to explore relationships between faunal diversity and assemblage structure and a variety of environmental variables. Our results support the hypothesis that internal tides influence spatial heterogeneity in wall faunal diversity and assemblages by generating both spatial and temporal gradients in hydrodynamic properties and consequently likely food supply

Towards incorporation of blue carbon in Falkland Islands marine spatial planning: a multi-tiered approach

Ecosystem-based conservation that includes carbon sinks, alongside a linked carbon credit system, as part of a nature-based solution to combating climate change, could help reduce greenhouse gas levels and therefore the impact of their emissions. Blue carbon habitats and pathways can also facilitate biodiversity retention, aiding sustainable fisheries and island economies. However, robust blue carbon research is often limited at the scale of regional governance and management, lacking both incentives and facilitation of policy-integration. The remote and highly biodiverse coastal ecosystems and surrounding continental shelf can be used to better inform long-term ecosystem-based management in the vast South Atlantic Ocean and sub-Antarctic, to synergistically protect both unique biodiversity and inform on the magnitude of nature-based benefits they provide. Understanding key ecosystem information such as their location, extent, and condition of habitat types, will be critical in understanding carbon pathways to sequestration, threats to this, and vulnerability. This paper considers the current status of blue carbon data and information available, and what is still required before blue carbon can be used as a conservation management tool integrated in national Marine Spatial Planning (MSP) initiatives. Our research indicates that the data and information gathered has enabled baselines for a number of different blue carbon ecosystems, and indicated potential threats and vulnerability that need to be managed. However, significant knowledge gaps remain across habitats, such as salt marsh, mudflats and the mesophotic zones, which hinders meaningful progress on the ground where it is needed most

A framework for the development of a global standardised marine taxon reference image database (SMarTaR-ID) to support image-based analyses

Video and image data are regularly used in the field of benthic ecology to document biodiversity. However, their use is subject to a number of challenges, principally the identification of taxa within the images without associated physical specimens. The challenge of applying traditional taxonomic keys to the identification of fauna from images has led to the development of personal, group, or institution level reference image catalogues of operational taxonomic units (OTUs) or morphospecies. Lack of standardisation among these reference catalogues has led to problems with observer bias and the inability to combine datasets across studies. In addition, lack of a common reference standard is stifling efforts in the application of artificial intelligence to taxon identification. Using the North Atlantic deep sea as a case study, we propose a database structure to facilitate standardisation of morphospecies image catalogues between research groups and support future use in multiple front-end applications. We also propose a framework for coordination of international efforts to develop reference guides for the identification of marine species from images. The proposed structure maps to the Darwin Core standard to allow integration with existing databases. We suggest a management framework where high-level taxonomic groups are curated by a regional team, consisting of both end users and taxonomic experts. We identify a mechanism by which overall quality of data within a common reference guide could be raised over the next decade. Finally, we discuss the role of a common reference standard in advancing marine ecology and supporting sustainable use of this ecosystem

REVIEW OF THE CENTRAL AND SOUTH ATLANTIC SHELF AND DEEP-SEA BENTHOS: SCIENCE, POLICY, AND MANAGEMENT

The Central and South Atlantic represents a vast ocean area and is home to a diverse range of ecosystems and species. Nevertheless, and similar to the rest of the global south, the area is comparatively understudied yet exposed to increasing levels of multisectoral pressures. To counteract this, the level of scientific exploration in the Central and South Atlantic has increased in recent years and will likely continue to do so within the context of the United Nations (UN) Decade of Ocean Science for Sustainable Development. Here, we compile the literature to investigate the distribution of previous scientific exploration of offshore (30 m+) ecosystems in the Central and South Atlantic, both within and beyond national jurisdiction, allowing us to synthesise overall patterns of biodiversity. Furthermore, through the lens of sustainable management, we have reviewed the existing anthropogenic activities and associated management measures relevant to the region. Through this exercise, we have identified key knowledge gaps and undersampled regions that represent priority areas for future research and commented on how these may be best incorporated into, or enhanced through, future management measures such as those in discussion at the UN Biodiversity Beyond National Jurisdiction negotiations. This review represents a comprehensive summary for scientists and managers alike looking to understand the key topographical, biological, and legislative features of the Central and South Atlantic.This paper is an output of the UN Ocean Decade endorsed Challenger 150 Programme (#57). Challenger 150 is supported by the Deep Ocean Stewardship Initiative (DOSI) and the Scientific Committee on Oceanic Research’s (SCOR) working group 159 (NSF Grant OCE-1840868) for which KLH is co-chair. AEHB, KLH, KAM, SBu, and KS are supported by the UKRI funded One Ocean Hub NE/S008950/1. TA is supported by the BiodivRestore ERA-NET Cofund (GA N°101003777) with the EU and the following funding organisations: FCT, RFCT, AEI, DFG, and ANR. TA also acknowledges financial support to CESAM by FCT/MCTES (UIDP/50017/2 020+UIDB/50017/2020+ LA/P/0094/2020) through national funds. NB is supported by the John Ellerman Foundation. AB is supported by the German Research Foundation. DH, CO, AFB, LA, SBr, and KS received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement no. 818123 (iAtlantic); this output reflects only the author’s view and the European Union cannot be held responsible for any use that may be made of the information contained therein. DH, AF, JT, and CW were additionally supported through the Cluster of Excellence “The Ocean Floor – Earth’s Uncharted Interface” (EXC-2077 – 390741603 by Deutsche Forschungsgemeinschaft). CO also extends thanks to the HWK – Institute for Advanced Study, and PM to Dr. Alberto Martín, retired professor of Universidad Simón Bolívar in Caracas, Venezuela for facilitating references used in the Venezuela section.Peer reviewe

PANC Study (Pancreatitis: A National Cohort Study): national cohort study examining the first 30 days from presentation of acute pancreatitis in the UK

Abstract Background Acute pancreatitis is a common, yet complex, emergency surgical presentation. Multiple guidelines exist and management can vary significantly. The aim of this first UK, multicentre, prospective cohort study was to assess the variation in management of acute pancreatitis to guide resource planning and optimize treatment. Methods All patients aged greater than or equal to 18 years presenting with acute pancreatitis, as per the Atlanta criteria, from March to April 2021 were eligible for inclusion and followed up for 30 days. Anonymized data were uploaded to a secure electronic database in line with local governance approvals. Results A total of 113 hospitals contributed data on 2580 patients, with an equal sex distribution and a mean age of 57 years. The aetiology was gallstones in 50.6 per cent, with idiopathic the next most common (22.4 per cent). In addition to the 7.6 per cent with a diagnosis of chronic pancreatitis, 20.1 per cent of patients had a previous episode of acute pancreatitis. One in 20 patients were classed as having severe pancreatitis, as per the Atlanta criteria. The overall mortality rate was 2.3 per cent at 30 days, but rose to one in three in the severe group. Predictors of death included male sex, increased age, and frailty; previous acute pancreatitis and gallstones as aetiologies were protective. Smoking status and body mass index did not affect death. Conclusion Most patients presenting with acute pancreatitis have a mild, self-limiting disease. Rates of patients with idiopathic pancreatitis are high. Recurrent attacks of pancreatitis are common, but are likely to have reduced risk of death on subsequent admissions. </jats:sec

Cold-water coral habitat mapping in submarine canyons

Submarine canyons, are geomorphological features of high ecological importance that require detailed faunal distribution maps and an advanced understanding of the processes influencing faunal distribution to ensure effective management. Faunal patterns are influenced by environmental heterogeneity in water mass characteristics, seafloor characteristics and food availability. The high structural complexity of canyon geomorphology, coupled with canyon-modified hydrodynamics (such as internal tides) are important phenomena that generate environmental heterogeneity in these variables. However, few faunal studies in canyons explicitly include physical oceanographic data (water mass characteristics and hydrodynamics) or fine-scale structural complexity as explanatory variables of faunal distribution and assemblage structure. This thesis applies a range of statistical approaches to a novel interdisciplinary dataset to increase our understanding of what drives faunal patterns, including cold-water corals, over a range of spatial scales using Whittard Canyon, North-East Atlantic as a model system. More specifically, this thesis aims to 1) assess the relative importance of physical oceanography in explaining faunal patterns across the canyon by estimating its effect on predictive modelling performance, 2) investigate if spatial patterns in temporal oceanographic variability induced by the internal tide explain variation in spatial patterns of faunal diversity and assemblage structure on canyon walls, and 3) explore the relationship between structural complexity at various spatial scales and faunal diversity/assemblage within mound provinces occurring on canyon interfluves. The research presented shows how structural complexity and internal tides influence faunal patterns by generating environmental heterogeneity at various spatial scales. Predictive distribution modelling demonstrates that including physical oceanographic data improves predictive accuracy and that the omission of these data can lead to an overestimated cold-water coral occurrence. The thesis demonstrates the importance of the internal tide in generating both spatial and temporal gradients in physical oceanography and food supply that influences faunal patterns in diversity, abundance and assemblage composition. The thesis further illustrates how structural complexity at various scales influences faunal patterns by generating environmental heterogeneity in fine-scale substratum characteristics and at broader-scales interacting with internal tides to concentrate food, both of which act to increase faunal diversity. The thesis also demonstrates that even when broad-scale structural complexity of the terrain is reduced, fine-scale structural complexity may still be present and acting to increase faunal diversity

Improving the predictive capability of benthic species distribution models by incorporating oceanographic data – Towards holistic ecological modelling of a submarine canyon

Submarine canyons are associated with increased biodiversity, including cold-water coral (CWC) colonies and reefs which are features of high conservation value that are under increasing anthropogenic pressure. Effective spatial management and conservation of these features requires accurate distribution maps and a deeper understanding of the processes that generate the observed distribution patterns. Predictive distribution modelling offers a powerful tool in the deep sea, where surveys are constrained by cost and technological capabilities. To date, predictive distribution modelling in canyons has focussed on integrating groundtruthed acoustically acquired datasets as proxies for environmental variables thought to influence faunal patterns. Physical oceanography is known to influence faunal patterns but has rarely been explicitly included in predictive distribution models of canyon fauna, thereby omitting key information required to adequately capture the species-environment relationships that form the basis of predictive distribution modelling. In this study, acoustic, oceanographic and biological datasets were integrated to undertake high-resolution predictions of benthic megafaunaldiversity and CWC distribution within Whittard Canyon, North-East Atlantic. The main aim was to investigate which environmental variables best predict faunal patterns in canyons and to assess whether including oceanographic data improves predictive modelling. General additive models, random forests andboosted regression trees were used to build predictive maps for CWC occurrence, megafaunal abundance, species richness and biodiversity. To provide more robust predictions, ensemble techniques that summarise the variation in predictions and uncertainties between modelling approaches were applied to build final maps. Model performance improved with the inclusion of oceanographic data. Ensemble maps identified areas of elevated currentspeed that coincided with steep ridges and escarpment walls as the areas most likely to harbour CWCs and increased biodiversity, probably linked to local hydrodynamics interacting with topography to concentrate foodresources. This study shows how incorporating oceanographic data into canyon models can broaden our understanding of processes generating faunal patterns and improve the mapping of features of conservation, supporting effective procedures for spatial ecosystem management

Identifying Vulnerable Marine Ecosystems: An image-based vulnerability index for the Southern Ocean seafloor

A significant proportion of Southern Ocean seafloor biodiversity is thought to be associated with fragile, slow growing, long-lived, and habitat-forming taxa. Minimizing adverse impact to these so-called vulnerable marine ecosystems (VMEs) is a conservation priority that is often managed by relying on fisheries bycatch data, combined with threshold-based conservation rules in which all “indicator” taxa are considered equal. However, VME indicator taxa have different vulnerabilities to fishing disturbance and more consideration needs to be given to how these taxa may combine to form components of ecosystems with high conservation value. Here, we propose a multi-criteria approach to VME identification that explicitly considers multiple taxa identified from imagery as VME indicator morpho-taxa. Each VME indicator morpho-taxon is weighted differently, based on its vulnerability to fishing. Using the “Antarctic Seafloor Annotated Imagery Database”, where 53 VME indicator morpho-taxa were manually annotated generating >40000 annotations, we computed an index of cumulative abundance and overall richness and assigned it to spatial grid cells. Our analysis quantifies the assemblage-level vulnerability to fishing, and allows assemblages to be characterized, e.g. as highly diverse or highly abundant. The implementation of this quantitative method is intended to enhance VME identification and contextualize the bycatch events

Towards a scientific community consensus on designating Vulnerable Marine Ecosystems from imagery

Management of deep-sea fisheries in areas beyond national jurisdiction by Regional Fisheries Management Organizations/Arrangements (RFMO/As) requires identification of areas with Vulnerable Marine Ecosystems (VMEs). Currently, fisheries data, including trawl and longline bycatch data, are used by many RFMO/As to inform the identification of VMEs. However, the collection of such data creates impacts and there is a need to collect non-invasive data for VME identification and monitoring purposes. Imagery data from scientific surveys satisfies this requirement, but there currently is no established framework for identifying VMEs from images. Thus, the goal of this study was to bring together a large international team to determine current VME assessment protocols and establish preliminary global consensus guidelines for identifying VMEs from images. An initial assessment showed a lack of consistency among RFMO/A regions regarding what is considered a VME indicator taxon, and hence variability in how VMEs might be defined. In certain cases, experts agreed that a VME could be identified from a single image, most often in areas of scleractinian reefs, dense octocoral gardens, multiple VME species' co-occurrence, and chemosynthetic ecosystems. A decision flow chart is presented that gives practical interpretation of the FAO criteria for single images. To further evaluate steps of the flow chart related to density, data were compiled to assess whether scientists perceived similar density thresholds across regions. The range of observed densities and the density values considered to be VMEs varied considerably by taxon, but in many cases, there was a statistical difference in what experts considered to be a VME compared to images not considered a VME. Further work is required to develop an areal extent index, to include a measure of confidence, and to increase our understanding of what levels of density and diversity correspond to key ecosystem functions for VME indicator taxa. Based on our results, the following recommendations are made: 1. There is a need to establish a global consensus on which taxa are VME indicators. 2. RFMO/As should consider adopting guidelines that use imagery surveys as an alternative (or complement) to using bycatch and trawl surveys for designating VMEs. 3. Imagery surveys should also be included in Impact Assessments. And 4. All industries that impact the seafloor, not just fisheries, should use imagery surveys to detect and identify VMEs

EUNIS habitat classification and associated confidence shapefiles for Atlantic regions investigated by the EU H2020 project iAtlantic (Version 3)

This dataset includes 11 regional EUNIS-classified habitat maps (100-1000 km) and associated confidence maps that were created as a project milestone (Nr. 12) of the EU H2020 project 'iAtlantic'. The 12 iAtlantic regions encompass 1. Subpolar Mid-Atlantic Ridge, off Iceland MFRI, 2. Rockall Trough to PAP, 3. Central mid-Atlantic Ridge, 4. NW Atlantic, Gully Canyon, 5. Sargasso Sea, 6. Eastern Tropical North Atlantic, Cape Verde, 7. Equatorial Atlantic, Romanche Fracture Zone, 8. Slope & margin off Angola & Congo Lobe, 9. Benguela Current, Walvis Ridge to South Africa, 10. Brazil margin & Santos and Campos Basin, 11. Vitória-Trindade Seamount Chain and 12. Malvinas Current. For each of the regions 2-12, a shapefile of polygons classified according to the 2022 EUNIS classification level 3 and a second shapefile of the same polygons attributed with their confidence level according to the MESH Accuracy & Confidence Working approach was created. EUNIS classifications combined biozone and substrate data. Biozones were assigned from bathymetry. Where MBES was not available, GEBCO bathymetry was used. Substrate data were extracted from pre-existing geological/substrate mapping efforts and converted to EUNIS classifications via cross walks or, where substrate data were limited, substrate layers were modelled using Random Forest. The EUNIS habitat map for Region 4 was based on the pre-existing surficial geology compilation of the Scotian Shelf bioregion compiled by the Geological Survey of Canada. The EUNIS habitat map for Region 9 was based on the pre-existing South African habitat map that uses a modified IUCN hierarchical classification system. No additional information to that used in the EUSeaMap was available for Region 1. Therefore, shapefiles were not created for Region 1