Past, present, and future distribution of Afromontane rodents (Muridae: Otomys) reflect climate-change predicted biome changes

Climate change constitutes a potential threat to montane biodiversity, particularly in low-altitude, tropical mountains; however, few data exist for the Afromontane taxa. In South Africa, the temperate grassland and fynbos biomes are mostly associated with the Great Escarpment and the high-lying central plateau. Varying contractions of the grassland and fynbos biomes are predicted under different climate scenarios by 2050. Animal taxa adapted to these biomes should suffer similar range declines and can be used to independently test the vegetation models. We constructed MaxEnt models from 271 unique locality records for three species of montane and submontane vlei rats that are closely associated with grassland (Otomys auratus, Wroughton 1906), mesic savanna (Otomys angoniensis, Wroughton 1906), and fynbos (Otomys irroratus, Brants 1827) biomes in South Africa. Projected range shifts under the A2 emission scenario of the Intergovernmental Panel on Climate Change showed increases (O. angoniensis) and decreases (O. auratus) that closely mirrored those expected for the savanna and grassland biomes, respectively. Comparison of historical (from 90 years ago) and current occurrence data from a zone of sympatry in the tropical Soutpansberg Mountains (at 1250 m asl) showed complete replacement of the grassland-adapted rodent species (O. auratus) by the savanna-adapted species (O. angoniensis) due to historically documented changes from a grassland-dominated to thicket-dominated landscape

When is a species not a species? Uncoupled phenotypic, karyotypic and genotypic divergence in two species of South African laminate-toothed rats (Murinae: Otomyini)

Chromosomal polytypy, morphological conservatism and absence of data have frustrated the taxonomic revision of two species of southern African-endemic laminate-toothed rats (Otomys irroratus and Otomys saundersiae s.l.). New cytogenetic (G-banding and fluorescence in situ hybridization), DNA sequence [cytochrome b (cyt b) gene] and geometric morphometric data demonstrate the synonymy of O. saundersiae from Grahamstown (Eastern Cape, South Africa) under O. irroratus, and the validity of Otomys karoensis from the Fynbos Biome of the Western Cape. Phenotypic dimorphism in pelage colour and cranial morphology in O. irroratus from the climatically unpredictable Albany Thicket (=Savanna) Biome of the Eastern Cape results from the retention of allometric paedomorphic traits in some adults (saundersiae morph) but not others. The same paedomorphic traits are associated with speciation and karyotypic and genetic differentiation in O. karoensis. Within O. irroratus, two phenotypically and genotypically (cyt b divergence=6.4%) divergent lineages correspond with the Fynbos/Albany Thicket and Grassland biomes. Incipient speciation in O. irroratus seems to be associated with ecology rather than karyotype. © 2009 The Zoological Society of London.Articl

Heterogeneous and Homogeneous Parallel Architectures for Real-Time Adaptive Active Vibration Control

This paper presents an investigation into parallel processing techniques for real-time adaptive control of a flexible beam structure. Three different algorithms, namely simulation, control and identification are involved in the adaptive control algorithm. These are implemented on a number of computing platforms including a homogeneous network of transputer nodes, a homogeneous network of digital signal processing (DSP) devices, heterogeneous architectures involving transputers, reduced instruction set computer superscalar processor and DSP device, single DSP devices and transputer nodes and several general purpose sequential processors. The partitioning and mapping of the algorithms on the homogeneous and heterogeneous architectures is also explored. The inter-processor communication speed is investigated to establish the real-time performance aspects of the processors on the basis of the nature of the algorithms involved. A close investigation into the performance of several compilers is made and discussed within the context of real-time implementations. Finally, a comparison of the results of the implementations is made, on the basis of real-time communications performance, computation performance and complier performance, to lead to merits of design of parallel systems incorporating fast processing techniques for real-time control applications

Partitions with Prescribed Hook Differences

We investigate partition identities related to off-diagonal hook differences. Our results generalize previous extensions of the Rogers—Ramanujan identities. The identity of the related polynomials with constructs in statistical mechanics is discussed

Volcanic air pollution and human health: recent advances and future directions

Volcanic air pollution from both explosive and effusive activity can affect large populations as far as thousands of kilometers away from the source, for days to decades or even centuries. Here, we summarize key advances and prospects in the assessment of health hazards, effects, risk, and management. Recent advances include standardized ash assessment methods to characterize the multiple physicochemical characteristics that might influence toxicity; the rise of community-based air quality monitoring networks using low-cost gas and particulate sensors; the development of forecasting methods for ground-level concentrations and associated public advisories; the development of risk and impact assessment methods to explore health consequences of future eruptions; and the development of evidence-based, locally specific measures for health protection. However, it remains problematic that the health effects of many major and sometimes long-duration eruptions near large populations have gone completely unmonitored. Similarly, effects of prolonged degassing on exposed populations have received very little attention relative to explosive eruptions. Furthermore, very few studies have longitudinally followed populations chronically exposed to volcanic emissions; thus, knowledge gaps remain about whether chronic exposures can trigger development of potentially fatal diseases. Instigating such studies will be facilitated by continued co-development of standardized protocols, supporting local study teams and procuring equipment, funding, and ethical permissions. Relationship building between visiting researchers and host country academic, observatory, and agency partners is vital and can, in turn, support the effective communication of health impacts of volcanic air pollution to populations, health practitioners, and emergency managers

AR and MA representation of partial autocorrelation functions, with applications

We prove a representation of the partial autocorrelation function (PACF), or the Verblunsky coefficients, of a stationary process in terms of the AR and MA coefficients. We apply it to show the asymptotic behaviour of the PACF. We also propose a new definition of short and long memory in terms of the PACF.Comment: Published in Probability Theory and Related Field

Evaluating a novel cervical orthosis, the Sheffield Support Snood, in patients with amyotrophic lateral sclerosis/motor neuron disease with neck weakness

Current practice and guidelines recommend the use of neck orthoses for people with amyotrophic lateral sclerosis (ALS) to compensate for neck weakness and to provide surrogate neck control. However, available options are frequently described by patients as restrictive and unsuitable and there was a need for a new device that addressed the needs of people with ALS. This project utilized a co-design process to develop a new neck orthosis that was more flexible yet supportive. Following development of a prototype device, a mixed methods cohort study was undertaken with patients and carers, in order to evaluate the new orthosis. Twenty-six patients were recruited to the study, with 20 of these completing all phases of data collection. Participants described the impact of neck weakness on their life and limitations of existing supports. Evaluation of the new orthosis identified key beneficial features: notably, increased support while providing a greater range of movement, flexibility of use, and improved appearance and comfort. In conclusion, the results of this evaluation highlight the value of this alternative option for people with ALS, and potentially other patient groups who require a neck orthosis

Impact of a quadrivalent meningococcal ACWY glycoconjugate or a serogroup B meningococcal vaccine on meningococcal carriage: an observer-blind, phase 3 randomised clinical trial

Background: Meningococcal conjugate vaccines protect individuals directly, but also confer herd protection by interrupting carriage transmission. This Phase III observer-blind, randomised, controlled study evaluated the effects of meningococcal quadrivalent (ACWY) glycoconjugate (MenACWY-CRM) or serogroup B (4CMenB) vaccination on meningococcal carriage rates in young adults. Methods: University students (aged 18–24 years) from ten sites in England were randomised to receive two vaccinations one month apart: two doses of Japanese Encephalitis vaccine (controls), two doses of 4CMenB (4CMenB), or one dose of MenACWY-CRM then placebo (MenACWY-CRM). Meningococci were isolated from oropharyngeal swabs collected before vaccination and at five scheduled intervals over one year. Primary analysis was cross-sectional carriage one month after the vaccine course; secondary analyses included comparison of carriage at any time point after primary analysis until study termination. Findings: 2954 subjects were randomised (control, n=987; 4CMenB, n=988; MenACWY-CRM, n=979); approximately one-third of each group was positive for meningococcal carriage at study entry. By one month, there was no significant difference in carriage between controls and 4CMenB (Odds Ratios (OR) [95% CI]; 1·2 [0·8−1·7]) or MenACWY-CRM (OR [95% CI], 0·9 [0·6–1·3]) groups. From three months after dose two, 4CMenB vaccination resulted in significantly lower carriage of any meningococcal strain (calculated efficacy 18·2% [95% CI: 3·4–30·8]) and capsular groups BCWY (calculated efficacy 26·6% [95% CI: 10·5–39·9]) compared to control vaccination. Significantly lower carriage rates were also observed in the MenACWY-CRM group compared with controls: calculated efficacies 39·0% [95%CI: 17·3-55·0] and 36.2% [95%CI: 15·6-51·7] for serogroups Y and CWY, respectively. Interpretation: MenACWY-CRM and 4CMenB vaccines reduced meningococcal carriage rates over 12 months post-vaccination and, therefore, may affect transmission where widely implemented

Study of Percolative Transitions with First-Order Characteristics in the Context of CMR Manganites

The unusual magneto-transport properties of manganites are widely believed to be caused by mixed-phase tendencies and concomitant percolative processes. However, dramatic deviations from "standard" percolation have been unveiled experimentally. Here, a semi-phenomenological description of Mn oxides is proposed based on coexisting clusters with smooth surfaces, as suggested by Monte Carlo simulations of realistic models for manganites, also briefly discussed here. The present approach produces fairly abrupt percolative transitions and even first-order discontinuities, in agreement with experiments. These transitions may describe the percolation that occurs after magnetic fields align the randomly oriented ferromagnetic clusters believed to exist above the Curie temperature in Mn oxides. In this respect, part of the manganite phenomenology could belong to a new class of percolative processes triggered by phase competition and correlations.Comment: 4 pages, 4 eps figure

Peri active site catalysis of proline isomerisation is the molecular basis of allomorphy in β-phosphoglucomutase

Metabolic regulation occurs through precise control of enzyme activity. Allomorphy is a post-translational fine control mechanism where the catalytic rate is governed by a conformational switch that shifts the enzyme population between forms with different activities. β-Phosphoglucomutase (βPGM) uses allomorphy in the catalysis of isomerisation of β-glucose 1-phosphate to glucose 6-phosphate via β-glucose 1,6-bisphosphate. Herein, we describe structural and biophysical approaches to reveal its allomorphic regulatory mechanism. Binding of the full allomorphic activator β-glucose 1,6-bisphosphate stimulates enzyme closure, progressing through NAC I and NAC III conformers. Prior to phosphoryl transfer, loops positioned on the cap and core domains are brought into close proximity, modulating the environment of a key proline residue. Hence accelerated isomerisation, likely via a twisted anti/C4-endo transition state, leads to the rapid predominance of active cis-P βPGM. In contrast, binding of the partial allomorphic activator fructose 1,6-bisphosphate arrests βPGM at a NAC I conformation and phosphoryl transfer to both cis-P βPGM and trans-P βPGM occurs slowly. Thus, allomorphy allows a rapid response to changes in food supply while not otherwise impacting substantially on levels of important metabolites