A Comprehensive Study of the L1551 IRS 5 Binary System

We model the Class I source L1551 IRS 5, adopting a flattened infalling envelope surrounding a binary disk system and a circumbinary disk. With our composite model, we calculate self-consistently the spectral energy distribution of each component of the L1551 IRS 5 system, using additional constraints from recent observations by ISO, the water ice feature from observations with SpeX, the SCUBA extended spatial brightness distribution at sub-mm wavelengths, and the VLA spatial intensity distributions at 7 mm of the binary disks. We analyze the sensitivity of our results to the various parameters involved. Our results show that a flattened envelope collapse model is required to explain simultaneously the large scale fluxes and the water ice and silicate features. On the other hand, we find that the circumstellar disks are optically thick in the millimeter range and are inclined so that their outer parts hide the emission along the line of sight from their inner parts. We also find that these disks have lower mass accretion rates than the infall rate of the envelope.Comment: 38 pages, 13 figures. To appear in ApJ (v586 April 1, 2003 issue

The effect of scattering on the structure and SED of protoplanetary disks

In this paper we investigate how the inclusion of scattering of the stellar radiation into a passive flaring disk model affects its structure and spectral energy distribution, and whether neglecting it could significantly decrease the model reliability. In order to address these questions we construct a detailed 1+1D vertical structure model in which the scattering properties of the dust can be varied. Models are presented with and without dust scattering, and for different albedos and phase functions. It is found that scattering has the effect of reducing the disk temperature at all heights, so that the disk "shrinks", i.e., the the density at all intermediate heights decreases. However, this effect in most cases is more than compensated by the increase of the total extinction (absorption + scattering) cross section, so that the surface scale height increases, and images in scattered light will see a slightly thicker disk. The integrated infrared emission decreases as the albedo increases, because an increasing part of the flux captured by the disk is reflected away instead of absorbed and reprocessed. The reduction of the infrared thermal emission of the disk is stronger at short wavelengths (near infrared) and practically negligible at millimeter wavelengths. For relatively low albedo (alb <~ 0.5), or for strongly forward-peaked scattering (g roughly >0.8), the infrared flux reduction is relatively small.Comment: Accepted for publication in Astronomy & Astrophysic

Multiplicity, Disks and Jets in the NGC 2071 Star-Forming Region

We present centimeter and millimeter observations of the NGC 2071 star-forming region performed with the VLA and CARMA. We detected counterparts at 3.6 cm and 3 mm for the previously known sources IRS 1, IRS 2, IRS 3, and VLA 1. All these sources show SEDs dominated by free-free thermal emission at cm wavelengths, and thermal dust emission at mm wavelengths, suggesting that all of them are associated with YSOs. IRS 1 shows a complex morphology at 3.6 cm, with changes in the direction of its elongation. We discuss two possible explanations to this morphology: the result of changes in the direction of a jet due to interactions with a dense ambient medium, or that we are actually observing the superposition of two jets arising from two components of a binary system. Higher angular resolution observations at 1.3 cm support the second possibility, since a double source is inferred at this wavelength. IRS 3 shows a clear jet-like morphology at 3.6 cm. Over a time-span of four years, we observed changes in the morphology of this source that we interpret as due to ejection of ionized material in a jet. The emission at 3 mm of IRS 3 is angularly resolved, with a deconvolved size (FWHM) of ~120 AU, and seems to be tracing a dusty circumstellar disk perpendicular to the radio jet. An irradiated accretion disk model around an intermediate-mass YSO can account for the observed SED and spatial intensity profile at 3 mm, supporting this interpretation.Comment: Accepted by The Astrophysical Journa

A Spatially Resolved Inner Hole in the Disk around GM Aurigae

We present 0.3 arcsec resolution observations of the disk around GM Aurigae with the Submillimeter Array (SMA) at a wavelength of 860 um and with the Plateau de Bure Interferometer at a wavelength of 1.3 mm. These observations probe the distribution of disk material on spatial scales commensurate with the size of the inner hole predicted by models of the spectral energy distribution. The data clearly indicate a sharp decrease in millimeter optical depth at the disk center, consistent with a deficit of material at distances less than ~20 AU from the star. We refine the accretion disk model of Calvet et al. (2005) based on the unresolved spectral energy distribution (SED) and demonstrate that it reproduces well the spatially resolved millimeter continuum data at both available wavelengths. We also present complementary SMA observations of CO J=3-2 and J=2-1 emission from the disk at 2" resolution. The observed CO morphology is consistent with the continuum model prediction, with two significant deviations: (1) the emission displays a larger CO J=3-2/J=2-1 line ratio than predicted, which may indicate additional heating of gas in the upper disk layers; and (2) the position angle of the kinematic rotation pattern differs by 11 +/- 2 degrees from that measured at smaller scales from the dust continuum, which may indicate the presence of a warp. We note that photoevaporation, grain growth, and binarity are unlikely mechanisms for inducing the observed sharp decrease in opacity or surface density at the disk center. The inner hole plausibly results from the dynamical influence of a planet on the disk material. Warping induced by a planet could also potentially explain the difference in position angle between the continuum and CO data sets.Comment: 12 pages, 6 figures, accepted for publication in Ap

Selective Deamidation and Enzymatic Methylation of Seminal Ribonuclease

Isoenzymatic forms alfa2, alfa-beta, and beta2 of bovine seminal ribonuclease are generated by the transformation of beta-type into alfa-type subunit through deamidation of a single amide group. The residue involved in this selective deamidation has been identified as Asn67 . Deamidation occurs by formation of a cyclic imide intermediate involving the Gly at position 68. Opening of the cyclic imide may occur on either side of the nitrogen, generating both the normal alfa-aspartyl and an isoaspartyl residue at position 67. The alfa-carboxyl of the isoaspartyl residue is effectively methylated by bovine brain protein carboxylmethyltransferase

Unveiling the Structure of Pre-Transitional Disks

In the past few years, several disks with inner holes that are empty of small dust grains have been detected and are known as transitional disks. Recently, Spitzer has identified a new class of "pre-transitional disks" with gaps; these objects have an optically thick inner disk separated from an optically thick outer disk by an optically thin disk gap. A near-infrared spectrum provided the first confirmation of a gap in the pre-transitional disk of LkCa 15 by verifying that the near-infrared excess emission in this object was due to an optically thick inner disk. Here we investigate the difference between the nature of the inner regions of transitional and pre-transitional disks using the same veiling-based technique to extract the near-infrared excess emission above the stellar photosphere. We show that the near-infrared excess emission of the previously identified pre-transitional disks of LkCa 15 and UX Tau A in Taurus as well as the newly identified pre-transitional disk of ROX 44 in Ophiuchus can be fit with an inner disk wall located at the dust destruction radius. We also model the broad-band SEDs of these objects, taking into account the effect of shadowing by the inner disk on the outer disk, considering the finite size of the star. The near-infrared excess continua of these three pre-transitional disks, which can be explained by optically thick inner disks, are significantly different from that of the transitional disks of GM Aur, whose near-infrared excess continuum can be reproduced by emission from sub-micron-sized optically thin dust, and DM Tau, whose near-infrared spectrum is consistent with a disk hole that is relatively free of small dust. The structure of pre-transitional disks may be a sign of young planets forming in these disks and future studies of pre-transitional disks will provide constraints to aid in theoretical modeling of planet formation.Comment: Accepted for publication in ApJ on May 10, 2010; 29 page