Seismic velocity structure of seaward-dipping reflectors on the South American continental margin

Seaward dipping reflectors (SDRs) are a key feature within the continent to ocean transition zone of volcanic passive margins. Here we conduct an automated pre-stack depth-migration imaging analysis of commercial seismic data from the volcanic margins of South America. The method used an isotropic, ray-based approach of iterative velocity model building based on the travel time inversion of residual pre-stack depth migration move-out. We find two distinct seismic velocity patterns within the SDRs. While both types show a general increase in velocity with depth consistent with expected compaction and alteration/metamorphic trends, those SDRs that lie within faulted half grabens also have high velocity zones at their down-dip ends. The velocity anomalies are generally concordant with the reflectivity and so we attribute them to the presence of dolerite sills that were injected into the lava pile. The sills therefore result from late-stage melt delivery along the large landward-dipping faults that bound them. In contrast the more outboard SDRs show no velocity anomalies, are more uniform spatially and have unfaulted basal contacts. Our observations imply that the SDRs document a major change in rift architecture, with magmatism linked with early extension and faulting of the upper brittle crust transitioning into more organised, dike-fed eruptions similar to seafloor spreading

The role of the ER stress response protein PERK in rhodopsin retinitis pigmentosa

Mutations in rhodopsin, the light sensitive protein of rod cells, are the most common cause of dominant retinitis pigmentosa (RP), a type of inherited blindness caused by the dysfunction and death of photoreceptor cells. The P23H mutation, the most frequent single cause of RP in the USA, causes rhodopsin misfolding and induction of the unfolded protein response (UPR), an adaptive ER stress response and signalling network that aims to enhance the folding and degradation of misfolded proteins to restore proteostasis. Prolonged UPR activation, and in particular the PERK branch, can reduce protein synthesis and initiate cell death through induction of pro-apoptotic pathways. Here, we investigated the effect of pharmacological PERK inhibition on retinal disease process in the P23H-1 transgenic rat model of retinal degeneration. PERK inhibition with GSK2606414A led to an inhibition of eIF2α phosphorylation, which correlated with reduced ERG function and decreased photoreceptor survival at both high and low doses of PERK inhibitor. Additionally, PERK inhibition increased the incidence of inclusion formation in cultured cells overexpressing P23H rod opsin, and increased rhodopsin aggregation in the P23H-1 rat retina, suggesting enhanced P23H misfolding and aggregation. In contrast, treatment of P23H-1 rats with an inhibitor of eIF2α phosphatase, salubrinal, led to improved photoreceptor survival. Collectively, these data suggest the activation of PERK is part of a protective response to mutant rhodopsin that ultimately limits photoreceptor cell death

Autonomous four-dimensional mapping and tracking of a coastal upwelling front by an autonomous underwater vehicle

© The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Journal of Field Robotics 33 (2016): 67-81, doi:10.1002/rob.21617Coastal upwelling is a wind-driven ocean process that brings cooler, saltier, and nutrient-rich deep water upward to the surface. The boundary between the upwelling water and the normally stratified water is called the “upwelling front.” Upwelling fronts support enriched phytoplankton and zooplankton populations, thus they have great influences on ocean ecosystems. Traditional ship-based methods for detecting and sampling ocean fronts are often laborious and very difficult, and long-term tracking of such dynamic features is practically impossible. In our prior work, we developed a method of using an autonomous underwater vehicle (AUV) to autonomously detect an upwelling front and track the front's movement on a fixed latitude, and we applied the method in scientific experiments. In this paper, we present an extension of the method. Each time the AUV crosses and detects the front, the vehicle makes a turn at an oblique angle to recross the front, thus zigzagging through the front to map the frontal zone. The AUV's zigzag tracks alternate in northward and southward sweeps, so as to track the front as it moves over time. This way, the AUV maps and tracks the front in four dimensions—vertical, cross-front, along-front, and time. From May 29 to June 4, 2013, the Tethys long-range AUV ran the algorithm to map and track an upwelling front in Monterey Bay, CA, over five and one-half days. The tracking revealed spatial and temporal variabilities of the upwelling front.This work was supported by the David and Lucile Packard Foundation

Disentangling niche theory and beta diversity change

Beta diversity describes the differences in species composition among communities. Changes in beta diversity over time are thought to be due to selection based on species’ niche characteristics. For example, theory predicts that selection that favours habitat specialists will increase beta diversity. In practice, ecologists struggle to predict how beta diversity changes. To remedy this problem, we propose a novel solution that formally measures selection’s effects on beta diversity. Using the Price equation, we show how change in beta diversity over time can be partitioned into fundamental mechanisms including selection among species, variable selection among communities, drift, and immigration. A key finding of our approach is that a species’ short-term impact on beta diversity cannot be predicted using information on its long-term environmental requirements (i.e. its niche). We illustrate how our approach can be used to partition causes of diversity change in a montane tropical forest before and after an intense hurricane. Previous work in this system highlighted the resistance of habitat specialists and the recruitment of light-demanding species but was unable to quantify the importance of these effects on beta diversity. Using our approach, we show that changes in beta diversity were consistent with ecological drift. We use these results to highlight the opportunities presented by a synthesis of beta diversity and formal models of selection

Evolution of seaward-dipping reflectors at the onset of oceanic crust formation at volcanic passive margins: Insights from the South Atlantic

Seaward-dipping reflectors (SDRs) have long been recognized as a ubiquitous feature of volcanic passive margins, yet their evolution is much debated, and even the subject of the nature of the underlying crust is contentious. This uncertainty significantly restricts our understanding of continental breakup and ocean basin–forming processes. Using high-fidelity reflection data from offshore Argentina, we observe that the crust containing the SDRs has similarities to oceanic crust, albeit with a larger proportion of extrusive volcanics, variably interbedded with sediments. Densities derived from gravity modeling are compatible with the presence of magmatic crust beneath the outer SDRs. When these SDR packages are restored to synemplacement geometry we observe that they thicken into the basin axis with a nonfaulted, diffuse termination, which we associate with dikes intruding into initially horizontal volcanics. Our model for SDR formation invokes progressive rotation of these horizontal volcanics by subsidence driven by isostasy in the center of the evolving SDR depocenter as continental lithosphere is replaced by more dense oceanic lithosphere. The entire system records the migration of >10-km-thick new magmatic crust away from a rapidly subsiding but subaerial incipient spreading center at rates typical of slow oceanic spreading processes. Our model for new magmatic crust can explain SDR formation on magma-rich margins globally, but the estimated crustal thickness requires elevated mantle temperatures for their formation

Non-Native Plants Disrupt Dual Promotion of Native Alpha and Beta Diversity

Abstract Non-native species can alter patterns of species diversity at multiple spatial scales, but the processes that underlie multi-scale effects remain unclear. Here we show that non-native species reduce native diversity at multiple scales through simultaneous disruption of two processes of native community assembly: species immigration, which enhances alpha diversity, and community divergence, which enhances beta diversity. Community divergence refers to the process in which local communities diverge over time in species composition because the history of species immigration and, consequently, the way species affect one another within communities are variable among communities. Continuous experimental removal of species over four years of floodplain succession revealed that, when non-native species were excluded, stochastic variation in the timing of a dominant native species' arrival allowed local communities to diverge, thereby enhancing beta diversity, without compromising promotion of alpha diversity by species immigration. In contrast, when non-native species were allowed to enter experimental plots, they not only reduced native alpha diversity by limiting immigration, but also diminished the dominant native species' role in enhancing native beta diversity. Our results highlight the importance of community assembly and succession for understanding multi-scale effects of non-native species

Evolution of Melanopsin Photoreceptors: Discovery and Characterization of a New Melanopsin in Nonmammalian Vertebrates

In mammals, the melanopsin gene (Opn4) encodes a sensory photopigment that underpins newly discovered inner retinal photoreceptors. Since its first discovery in Xenopus laevis and subsequent description in humans and mice, melanopsin genes have been described in all vertebrate classes. Until now, all of these sequences have been considered representatives of a single orthologous gene (albeit with duplications in the teleost fish). Here, we describe the discovery and functional characterisation of a new melanopsin gene in fish, bird, and amphibian genomes, demonstrating that, in fact, the vertebrates have evolved two quite separate melanopsins. On the basis of sequence similarity, chromosomal localisation, and phylogeny, we identify our new melanopsins as the true orthologs of the melanopsin gene previously described in mammals and term this grouping Opn4m. By contrast, the previously published melanopsin genes in nonmammalian vertebrates represent a separate branch of the melanopsin family which we term Opn4x. RT-PCR analysis in chicken, zebrafish, and Xenopus identifies expression of both Opn4m and Opn4x genes in tissues known to be photosensitive (eye, brain, and skin). In the day-14 chicken eye, Opn4m mRNA is found in a subset of cells in the outer nuclear, inner nuclear, and ganglion cell layers, the vast majority of which also express Opn4x. Importantly, we show that a representative of the new melanopsins (chicken Opn4m) encodes a photosensory pigment capable of activating G protein signalling cascades in a light- and retinaldehyde-dependent manner under heterologous expression in Neuro-2a cells. A comprehensive in silico analysis of vertebrate genomes indicates that while most vertebrate species have both Opn4m and Opn4x genes, the latter is absent from eutherian and, possibly, marsupial mammals, lost in the course of their evolution as a result of chromosomal reorganisation. Thus, our findings show for the first time that nonmammalian vertebrates retain two quite separate melanopsin genes, while mammals have just one. These data raise important questions regarding the functional differences between Opn4x and Opn4m pigments, the associated adaptive advantages for most vertebrate species in retaining both melanopsins, and the implications for mammalian biology of lacking Opn4x

Observation of light echoes around very young stars

The goal of the paper is to present new results on light echoes from young stellar objects. Broad band CCD images were obtained over three months at one-to-two week intervals for the field of NGC 6726, using the large field-of-view remotely-operated telescope on top of Cerro Burek. We detected scattered light echoes around two young, low-amplitude, irregular variable stars. Observations revealed not just one, but multiple light echoes from brightness pulses of the T Tauri star S CrA and the Herbig Ae/Be star R CrA. Analysis of S CrA's recurring echoes suggests that the star is located 138 +/- 16 pc from Earth, making these the closest echoes ever detected. The environment that scatters the stellar light from S CrA is compatible with an incomplete dust shell or an inclined torus some 10,000 AU in radius and containing $\sim$ $2 \times 10^{-3}$ M_{\sun} of dust. The cause of such concentration at $\sim$ 10,000AU from the star is unknown. It could be the remnant of the envelope from which the star formed, but the distance of the cloud is remarkably similar to the nominal distance of the Oort cloud to the Sun, leading us to also speculate that the dust (or ice) seen around S CrA might have the same origin as the Solar System Oort cloud.Comment: A&A, in press Received: 16 March 2010 / Accepted: 01 June 201

When pharmacotherapeutic recommendations may lead to the reverse effect on physician decision-making

For long the medical literature has shown that patients do not always receive appropriate care, including pharmacotherapeutic treatment. To achieve improved patient care, a number of physician-oriented interventions are being delivered internationally in an attempt to implement evidence based medicine in routine daily practice of medical practitioners. The pharmacy profession has taken an active role in the delivery of intervention strategies aimed at promoting evidence based prescribing and improved quality and safety of medicine use. However, the medical literature also supports the notion that valid clinical care recommendations do not always have the desired impact on physician behaviour. We argue that the well-established theory of psychological reactance might at least partially explain instances when physicians do not act upon such recommendations. Reactance theory suggests that when recommended to take a certain action, a motivational state compels us to react in a way that affirms our freedom to choose. Often we choose to do the opposite of what the recommendation is proposing that we do or we just become entrenched in our initial position. The basic concepts of psychological reactance are universal and likely to be applicable to the provision of recommendations to physicians. Making recommendations regarding clinical care, including pharmacotherapy, may carry with it implied threats, as it can be perceived as an attempt to restrict one’s freedom of choice potentially generating reactance and efforts to avoid them. By identifying and taking into account factors likely to promote reactance, physician-oriented interventions could become more effective