Molecular epidemiology of Clostridioides difficile in companion animals: Genetic overlap with human strains and public health concerns

Research Areas: Public, Environmental & Occupational HealthIntroduction: The changing epidemiology of Clostridioides difficile reflects a well-established and intricate community transmission network. With rising numbers of reported community-acquired infections, recent studies tried to identify the role played by non-human reservoirs in the pathogen's transmission chain. This study aimed at describing the C. difficile strains circulating in canine and feline populations, and to evaluate their genetic overlap with human strains to assess the possibility of interspecies transmission. Methods: Fecal samples from dogs (n = 335) and cats (n = 140) were collected from two populations (group A and group B) in Portugal. C. difficile isolates were characterized for toxigenic profile and PCR-ribotyping. The presence of genetic determinants of antimicrobial resistance was assessed in all phenotypically resistant isolates. To evaluate the genetic overlap between companion animals and human isolates from Portugal, RT106 (n = 42) and RT014/020 (n = 41) strains from both sources were subjected to whole genome sequencing and integrated with previously sequenced RT106 (n = 43) and RT014/020 (n = 142) genomes from different countries. The genetic overlap was assessed based on core-single nucleotide polymorphism (SNP) using a threshold of 2 SNP. ResultsThe overall positivity rate for C. difficile was 26% (76/292) in group A and 18.6% (34/183) in group B. Toxigenic strains accounted for 50% (38/76) and 52.9% (18/34) of animal carriage rates, respectively. The most prevalent ribotypes (RT) were the toxigenic RT106 and RT014/020, and the non-toxigenic RT010 and RT009. Antimicrobial resistance was found for clindamycin (27.9%), metronidazole (17.1%) and moxifloxacin (12.4%), associated with the presence of the ermB gene, the pCD-METRO plasmid and point mutations in the gyrA gene, respectively. Both RT106 and RT014/020 genetic analysis revealed several clusters integrating isolates from animal and human sources, supporting the possibility of clonal interspecies transmission or a shared environmental contamination source. Discussion: This study shows that companion animals may constitute a source of infection of toxigenic and antimicrobial resistant human associated C. difficile isolates. Additionally, it contributes with important data on the genetic proximity between C. difficile isolates from both sources, adding new information to guide future work on the role of animal reservoirs in the establishment of community associated transmission networks and alerting for potential public health risk.info:eu-repo/semantics/publishedVersio

Simple polystyrene Microfluidic Device for Sensitive and Accurate SERS-Based Detection of Infection By Malaria Parasites

Early and accurate detection of infection by pathogenic microorganisms, such as Plasmodium, the causative agent of malaria, is critical for clinical diagnosis and ultimately determines the patient’s outcome. We have combined a polystyrene-based microfluidic device with an immunoassay which utilises Surface-Enhanced Raman Spectroscopy (SERS) to detect malaria. The method can be easily translated to a point-of-care testing format and shows excellent sensitivity and specificity, when compared to the gold standard for laboratorial detection of Plasmodium infections. The device can be fabricated in less than 30 min by direct patterning on shrinkable polystyrene sheets of adaptable three-dimensional microfluidic chips. To validate the microfluidic system, samples of P. falciparum-infected red blood cell cultures were used. The SERS-based immunoassay enabled the detection of 0.0012 ± 0.0001 % parasitaemia in a P. falciparum-infected red blood cell culture supernatant, an ~7-fold higher sensitivity than that attained by most rapid diagnostic tests. Our approach successfully overcomes the main challenges of the current Plasmodium detection methods, including increased reproducibility, sensitivity, and specificity. Furthermore, our system can be easily adapted for detection of other pathogens and has excellent properties for early diagnosis of infectious diseases, a decisive step towards lowering their high burden on healthcare systems worldwide

Measurement of the cross section for the production of a WW boson in association with b−b^- jets in pppp collisions at s=7\sqrt{s}=7 TeV with the ATLAS detector

A measurement is presented of the cross section for the production of a W boson with one or two jets, of which at least one must be a b-jet, in pp collisions at sqrt(s)=7 TeV. Production via top decay is not included in the signal definition. The measurement is based on 35 pb^-1 of data collected with the ATLAS detector at the LHC. The W+b-jet cross section is defined for jets reconstructed with the anti-kt clustering algorithm with transverse momentum above 25 GeV and rapidity within +/-2.1. The b-jets are identified by reconstructing secondary vertices. The fiducial cross section is measured both for the electron and muon decay channel of the W boson and is found to be 10.2 +/- 1.9 (stat) +/- 2.6 (syst) pb for one lepton flavour. The results are compared with next-to-leading order QCD calculations, which predict a cross section smaller than, though consistent with, the measured value.Peer Reviewe

Search for New Physics in the Dijet Mass Distribution using 1 fb−1^{-1} of pppp Collision Data at s=\sqrt{s}=7 TeV collected by the ATLAS Detector

Invariant mass distributions of jet pairs (dijets) produced in LHC proton-proton collisions at a centre-of-mass energy sqrt(s)=7 TeV have been studied using a data set corresponding to an integrated luminosity of 1.0 fb^-1 recorded in 2011 by ATLAS. Dijet masses up to ~4 TeV are observed in the data, and no evidence of resonance production over background is found. Limits are set at 95% CL for several new physics hypotheses: excited quarks are excluded for masses below 2.99 TeV, axigluons are excluded for masses below 3.32 TeV, and colour octet scalar resonances are excluded for masses below 1.92 TeV.Peer Reviewe

Antioxidant activity and cytotoxic effects of polar extracts from saffron (Crocus sativus L) flowers

Saffron (Crocus sativus L.) flower is composed of six purple tepals, three yellow stamens and a white filiform style ending in a stigma with three threads, which only represents less than 10% (w/w) of the flower weight. Nevertheless, saffron is cultivated for the stigma of its flowers which, after being dried, is the most valued spice [1]. For each kg of this spice, about 63 kg of floral bio-residues are produced, which so far are not exploited, being usually thrown away. However, the floral bio-residues were reported as having high phenolic content and bioactive properties, such as antioxidant, antityrosinase, antidepressant, antinociceptive, anti-inflammatory, antifungal and arterial pressure reducer activities [2]. In view of the reported bioactivity, it is important to study the cytotoxic effects of saffron [3]. Furthermore, it is a wellknown fact that the effectiveness of bioactive compounds extraction from plants, as well as their corresponding activity, is highly dependent on factors such as different types of solvent, solvent-to-solid ratios and specially the solvent polarity [4]. In the present work, the antioxidant activity of different polar extracts (ethanol, ethanol:water 1:1 v/v, and water) of saffron was evaluated using different in vitro assays (2,2-diphenyl-1-picrylhydrazyl radical-scavenging activity, ferric reducing reducing power and inhibition of β-carotene bleaching assay). In addition, the cytotoxicity of the extracts was also evaluated in Caco-2 (ATCC HTB-37TM) cultures by using MTT (3-[4,5-dimethylthiazol-2-yl]-2,5 diphenyltetrazolium bromide) assay. All samples proved to have antioxidant activity, despite the higher effectiveness of the hydroalcoholic extract. Up to the assayed concentrations, none of the extracts showed cytotoxicity against Caco-2 cell lines. Accordingly, saffron flowers might be used in different applications such as the development of food supplements or pharmaceutic related products

Measurement of the top quark pair production cross section in pppp collisions at s=7\sqrt{s}=7 TeV in dilepton final states with ATLAS

A measurement of the production cross section of top quark pairs (ttbar) in proton-proton collisions at a center-of-mass energy of 7 TeV recorded with the ATLAS detector at the Large Hadron Collider is reported. Candidate events are selected in the dilepton topology with large missing transverse energy and at least two jets. Using a data sample corresponding to an integrated luminosity of 35 pb^-1, a ttbar production cross section of 171 +/- 20(stat.) +/- 14(syst.) +8-6(lum.) pb is measured for an assumed top quark mass of 172.5 GeV. A second measurement requiring at least one jet identified as coming from a b quark yields a comparable result, demonstrating that the dilepton final states are consistent with being accompanied by b-quark jets. These measurements are in good agreement with Standard Model predictions.Peer Reviewe