Preface

The Palaeogene Skaergaard intrusion, East Greenland, has since its first description by Wager & Deer (1939) been a foremost natural laboratory for the study of low-pressure fractionation of basaltic melt. Ocean floors are composed of basalt and the processes that control compositions of basaltic melts are fundamental to the dynamics of the Earth. This special issue of GEUS Bulletin by Peter Thy, Christian Tegner and Charles E. Lesher is the most recent in a more than eighty year succession of trendsetting works on the evolution of the Skaergaard intrusion and evolution of basaltic melt. The early sample collections, housed in the universities of Oxford and Cambridge, were used for the development of fractionation models, mapping of the distribution as well as the partition of major and trace elements between melts and liquidus phases in basaltic melts. These and many other studies resulted in the monumental “Layered Igneous Rocks”, edited by L.R. Wager and G.M. Brown (Wager & Brown 1968). By the 1970s, the original collection in the Oxford University Museum of Natural History and the Sedgwick Museum of Earth Sciences, University of Cambridge had seen extensive use. The science developed and new and more detailed sampling was now required. Fieldwork and sampling in the later part of the 20th century led to a flurry of new studies by more research groups, including Neil Irvine of Carnegie’s Geophysical Laboratory and the University of Oregon group lead by Alex McBirney. Despite all the efforts, no consensus was reached on the many fundamental chemical and physical processes in basaltic magma chambers. The available collections did not provide sufficiently systematic and detailed information for the modelling of the evolution of the basaltic melt and the genesis of the precious metal deposit that had been discovered in the intrusion. Exploration drill cores offered the possibility for tight stratigraphic sampling through >1000 m of gabbro. In combination with surface sampling, a new standard profile with superior systematics could be established. In the summer of 2000, the Danish Lithosphere Centre (DLC) organised fieldwork and the transport of the drill cores to the Museum of Natural History in Copenhagen. This special issue is part of the legacy of the DLC and a fulfilment of the then envisaged potential of the Skaergaard intrusion for fundamental studies of processes in basaltic magma chambers. Thy et al. (2023, this volume) analyse and compile in unprecedented detail the variation in major and trace element compositions of bulk-rock samples and electron microprobe compositions of rock-forming minerals in the Layered Series on the floor of the intrusion. In addition, they include a wealth of information on all samples from the Skaergaard intrusion that are housed in museum, university and survey collections in Denmark, the UK and US, topographic and geological maps, aerial photographs in archives and images of thin sections used in the study. With all its data and appendices, the monograph is the most comprehensive collection of petrological information for the Skaergaard intrusion and the Layered Series on the floor of the intrusion, ever to have been made available for research. The detailed modelling presented re-evaluates petrogenetic constraints and tests petrogenetic models in the literature. The modelling is based on liquidus proportions established in experimental studies of appropriate melt compositions. Thy and co-authors conclude that evolution observed in the gabbros of the Layered Series is predominantly controlled by crystal fractionation of bulk liquid. Late in the evolution and above the boundary between Upper Zone a and b, the gabbros crystallised from ponded Fe-rich, immiscible melt. Redistribution of granophyric melts and decoupling of included and excluded trace elements, not only in bulk liquid but also in mush melts, complicates the modelling of trace element distributions in the late and evolved stages of crystallisation in the crystal mushes of the intrusion. This special issue is a treasure trove for all who study the intrusion and are searching for a data set to be matched with experimental and numeric modelling of low-pressure fractionation of basaltic melt. With this contribution, the Skaergaard intrusion continues to be a foremost natural laboratory for modelling of melts formed in solidifying basaltic magma chambers. Troels F.D. NielsenEmeritus, GEUS, Denmar

Obtaining the Quantum Fourier Transform from the Classical FFT with QR Decomposition

We present the detailed process of converting the classical Fourier Transform algorithm into the quantum one by using QR decomposition. This provides an example of a technique for building quantum algorithms using classical ones. The Quantum Fourier Transform is one of the most important quantum subroutines known at present, used in most algorithms that have exponential speed up compared to the classical ones. We briefly review Fast Fourier Transform and then make explicit all the steps that led to the quantum formulation of the algorithm, generalizing Coppersmith's work.Comment: 12 pages, 1 figure (generated within LaTeX). To appear in Journal of Computational and Applied Mathematic

The diagonalization method in quantum recursion theory

As quantum parallelism allows the effective co-representation of classical mutually exclusive states, the diagonalization method of classical recursion theory has to be modified. Quantum diagonalization involves unitary operators whose eigenvalues are different from one.Comment: 15 pages, completely rewritte

Host-glycan metabolism is regulated by a species-conserved two-component system in Streptococcus pneumoniae

Pathogens of the Streptococcus genus inhabit many different environmental niches during the course of an infection in a human host and the bacteria must adjust their metabolism according to available nutrients. Despite their lack of the citric-acid cycle, some streptococci proliferate in niches devoid of a readily available carbohydrate source. Instead they rely on carbohydrate scavenging for energy acquisition, which are obtained from the host. Here we discover a two-component system (TCS07) of Streptococcus pneumoniae that responds to glycoconjugated structures on proteins present on the host cells. Using next-generation RNA sequencing we find that the uncharacterized TCS07 regulon encodes proteins important for host-glycan processing and transporters of the released glycans, as well as intracellular carbohydrate catabolising enzymes. We find that a functional TCS07 allele is required for growth on the glycoconjugated model protein fetuin. Consistently, we see a TCS07-dependent activation of the glycan degradation pathway. Thus, we pinpoint the molecular constituents responsible for sensing host derived glycans and link this to the induction of the proteins necessary for glycan degradation. Furthermore, we connect the TCS07 regulon to virulence in a mouse model, thereby establishing that host-derived glycan-metabolism is important for infection in vivo. Finally, a comparative phylogenomic analysis of strains from the Streptococcus genus reveal that TCS07 and most of its regulon is specifically conserved in species that utilize host-glycans for growth.Patrick Rosendahl Andreassen, Claudia Trappetti, Vikrant Minhas, Flemming Damgaard Nielsen, Kevin Pakula, James C. Paton, Mikkel Girke Jørgense

Equation of state and phonon frequency calculations of diamond at high pressures

The pressure-volume relationship and the zone-center optical phonon frequency of cubic diamond at pressures up to 600 GPa have been calculated based on Density Functional Theory within the Local Density Approximation and the Generalized Gradient Approximation. Three different approaches, viz. a pseudopotential method applied in the basis of plane waves, an all-electron method relying on Augmented Plane Waves plus Local Orbitals, and an intermediate approach implemented in the basis of Projector Augmented Waves have been used. All these methods and approximations yield consistent results for the pressure derivative of the bulk modulus and the volume dependence of the mode Grueneisen parameter of diamond. The results are at variance with recent precise measurements up to 140 GPa. Possible implications for the experimental pressure determination based on the ruby luminescence method are discussed.Comment: 10 pages, 6 figure

Analytic properties of the Landau gauge gluon and quark propagators

We explore the analytic structure of the gluon and quark propagators of Landau gauge QCD from numerical solutions of the coupled system of renormalized Dyson--Schwinger equations and from fits to lattice data. We find sizable negative norm contributions in the transverse gluon propagator indicating the absence of the transverse gluon from the physical spectrum. A simple analytic structure for the gluon propagator is proposed. For the quark propagator we find evidence for a mass-like singularity on the real timelike momentum axis, with a mass of 350 to 500 MeV. Within the employed Green's functions approach we identify a crucial term in the quark-gluon vertex that leads to a positive definite Schwinger function for the quark propagator.Comment: 42 pages, 16 figures, revtex; version to be published in Phys Rev

Parallel evolution and adaptation to environmental factors in a marine flatfish: implications for fisheries and aquaculture management of the turbot (<i>Scophthalmus maximus</i>)

Unraveling adaptive genetic variation represents, in addition to the estimate of population demographic parameters, a cornerstone for the management of aquatic natural living resources, which, in turn, represent the raw material for breeding programs. The turbot (Scophthalmus maximus) is a marine flatfish of high commercial value living on the European continental shelf. While wild populations are declining, aquaculture is flourishing in southern Europe. We evaluated the genetic structure of turbot throughout its natural distribution range (672 individuals; 20 populations) by analyzing allele frequency data from 755 single nucleotide polymorphism discovered and genotyped by double‐digest RAD sequencing. The species was structured into four main regions: Baltic Sea, Atlantic Ocean, Adriatic Sea, and Black Sea, with subtle differentiation apparent at the distribution margins of the Atlantic region. Genetic diversity and effective population size estimates were highest in the Atlantic populations, the area of greatest occurrence, while turbot from other regions showed lower levels, reflecting geographical isolation and reduced abundance. Divergent selection was detected within and between the Atlantic Ocean and Baltic Sea regions, and also when comparing these two regions with the Black Sea. Evidence of parallel evolution was detected between the two low salinity regions, the Baltic and Black seas. Correlation between genetic and environmental variation indicated that temperature and salinity were probably the main environmental drivers of selection. Mining around the four genomic regions consistently inferred to be under selection identified candidate genes related to osmoregulation, growth, and resistance to diseases. The new insights are useful for the management of turbot fisheries and aquaculture by providing the baseline for evaluating the consequences of turbot releases from restocking and farming

Heavy quarkonium: progress, puzzles, and opportunities

A golden age for heavy quarkonium physics dawned a decade ago, initiated by the confluence of exciting advances in quantum chromodynamics (QCD) and an explosion of related experimental activity. The early years of this period were chronicled in the Quarkonium Working Group (QWG) CERN Yellow Report (YR) in 2004, which presented a comprehensive review of the status of the field at that time and provided specific recommendations for further progress. However, the broad spectrum of subsequent breakthroughs, surprises, and continuing puzzles could only be partially anticipated. Since the release of the YR, the BESII program concluded only to give birth to BESIII; the $B$-factories and CLEO-c flourished; quarkonium production and polarization measurements at HERA and the Tevatron matured; and heavy-ion collisions at RHIC have opened a window on the deconfinement regime. All these experiments leave legacies of quality, precision, and unsolved mysteries for quarkonium physics, and therefore beg for continuing investigations. The plethora of newly-found quarkonium-like states unleashed a flood of theoretical investigations into new forms of matter such as quark-gluon hybrids, mesonic molecules, and tetraquarks. Measurements of the spectroscopy, decays, production, and in-medium behavior of c\bar{c}, b\bar{b}, and b\bar{c} bound states have been shown to validate some theoretical approaches to QCD and highlight lack of quantitative success for others. The intriguing details of quarkonium suppression in heavy-ion collisions that have emerged from RHIC have elevated the importance of separating hot- and cold-nuclear-matter effects in quark-gluon plasma studies. This review systematically addresses all these matters and concludes by prioritizing directions for ongoing and future efforts.Comment: 182 pages, 112 figures. Editors: N. Brambilla, S. Eidelman, B. K. Heltsley, R. Vogt. Section Coordinators: G. T. Bodwin, E. Eichten, A. D. Frawley, A. B. Meyer, R. E. Mitchell, V. Papadimitriou, P. Petreczky, A. A. Petrov, P. Robbe, A. Vair