Vitamin D supplementation does not improve human skeletal muscle contractile properties in insufficient young males

Vitamin D may be a regulator of skeletal muscle function, although human trials investigating this hypothesis are limited to predominantly elderly populations. We aimed to assess the effect of oral vitamin D3 in healthy young males upon skeletal muscle function

Comparison of particulate trace element concentrations in the North Atlantic Ocean as determined with discrete bottle sampling and in situ pumping

Author Posting. © The Author(s), 2014. This is the author's version of the work. It is posted here by permission of Elsevier for personal use, not for redistribution. The definitive version was published in Deep Sea Research Part II: Topical Studies in Oceanography 116 (2015): 272-282, doi:10.1016/j.dsr2.2014.11.005.The oceanic geochemical cycles of many metals are controlled, at least in part, by interactions with particulate matter, and measurements of particulate trace metals are a core component of the international GEOTRACES program. Particles can be collected by several methods, including in-line filtration from sample bottles and in situ pumping. Both approaches were used to collect particles from the water column on the U.S. GEOTRACES North Atlantic Zonal Transect cruises. Statistical comparison of 91 paired samples collected at matching stations and depths indicate mean concentrations within 5% for Fe and Ti, within 10% for Cd, Mn and Co, and within 15% for Al. Particulate concentrations were higher in bottle samples for Cd, Mn and Co but lower in bottle samples for Fe, Al and Ti, suggesting that large lithogenic particles may be undersampled by bottles in near-shelf environments. In contrast, P was 58% higher on average in bottle samples. This is likely due to a combination of analytical offsets between lab groups, differences in filter pore size, and potential loss of labile P from pump samples following misting with deionized water. Comparable depth profiles were produced by the methods across a range of conditions in the North Atlantic.This work was funded by grants from the US National Science Foundation to BST (OCE-0928289) and PJL (OCE-0963026) as part of the US GEOTRACES North Atlantic Zonal Transect program

The iron/heme regulated genes of Haemophilus influenzae: comparative transcriptional profiling as a tool to define the species core modulon

<p>Abstract</p> <p>Background</p> <p><it>Haemophilus influenzae </it>requires heme for aerobic growth and possesses multiple mechanisms to obtain this essential nutrient. Although an understanding of the heme acquisition mechanisms of <it>H. influenzae </it>is emerging, significant gaps in our knowledge remain. Unresolved issues include the identities of all genes exhibiting altered transcription in response to iron and heme availability, the fraction of such genes functioning in iron/heme acquisition, and the heterogeneity of this gene set among clinical isolates. Previously we utilized <it>H. influenzae </it>strain Rd KW20 to demonstrate the utility of transcriptional profiling in defining the genes exhibiting altered transcription in response to environmental iron and heme levels. The current study expands upon those observations by determining the iron/heme modulons of two clinical isolates, the type b isolate 10810 and the nontypeable isolate R2866. These data are used to begin to define the core iron/heme modulon of the species.</p> <p>Results</p> <p>Microarray studies were performed to compare gene expression on transition from iron/heme-restricted to iron/heme-replete conditions for each isolate. Of 1820 ORFs on the array corresponding to R2866 genes, 363 were significantly differentially expressed: 233 were maximally transcribed under iron/heme-replete conditions and 130 under iron/heme-restricted conditions. Of the 1883 ORFs representing genes of strain 10810, 353 were significantly differentially transcribed: 150 were preferentially transcribed under iron/heme-replete conditions and 203 under iron/heme-restricted conditions. Comparison of the data sets indicated that 163 genes exhibited similar regulation in both isolates and that 74 of these exhibited similar patterns of regulation in Rd KW20. These comprise the putative core iron/heme modulon.</p> <p>Conclusion</p> <p>This study provides evidence for a conserved core of <it>H. influenzae </it>genes the transcription of which is altered by the availability of iron and/or heme in the growth environment. Elucidation of this modulon provides a means to identify genes with unrecognized roles in iron/heme acquisition or homeostasis, unanticipated responsiveness to environmental levels of the micronutrients or potential roles in virulence. Defining these core genes is also of potential importance in identifying targets for therapeutic and vaccine designs since products of these genes are likely to be preferentially expressed during growth in iron/heme restricted sites of the human body.</p

The use of electric pulse training aids (EPTAs) in companion animals

There is currently little regulation of training and behaviour modification processes in the UK (CAWC 2008) besides measures enshrined in the Animal Welfare Act 2006 and a voluntary Code of Practice launched in 2010 (see: http://www.cawc.org.uk/080603.pdf). This Code is consistent with current UK legislation outside of Wales and emphasises the need to safeguard the welfare of all interested parties involved in the “training contract” (animals and people alike) and the importance of adopting sound scientific methods within the skills base of the practitioner. There is much debate and opinion over whether the use of certain training techniques and devices meet these requirements, especially the use of electric pulse training aids (EPTAs). An EPTA is defined for the purposes of this report as a device designed for use in the training of dogs, cats and other companion animal species, which involves the application of an electric current to the skin to aid the training process. In Wales the use of all electronic collars has been banned ostensibly on animal welfare grounds, including those related to boundary fencing (The Animal Welfare (Electronic Collars) (Wales) Regulations 2010). It has been suggested that there are currently around 350000 EPTAs in the UK, although the number in active use is unknown. Nonetheless they clearly represent a significant practice within the sphere of animal training and it is appropriate that careful consideration be given to their use, especially when there appears to be so much contradictory information available and such passionately held convictions (often linked to ethical and animal welfare concerns) by those expressing an opinion. This report critically reviews current evidence and arguments used both for and against the use of such devices and the conclusions drawn. It highlights gaps in our knowledge and awareness of both theory and practice. Recommendations are drawn on this basis

High-Resolution Observations of Interstellar Ca I Absorption -- Implications for Depletions and Electron Densities in Diffuse Clouds

We present high-resolution (FWHM ~ 0.3-1.5 km/s) spectra of interstellar Ca I absorption toward 30 Galactic stars. Comparisons of the column densities of Ca I, Ca II, K I, and other species -- for individual components identified in the line profiles and also when integrated over entire lines of sight -- yield information on relative electron densities and depletions. There is no obvious relationship between the ratio N(Ca I)/N(Ca II) [equal to n_e/(Gamma/alpha_r) for photoionization equilibrium] and the fraction of hydrogen in molecular form f(H2) (often taken to be indicative of the local density n_H). For a smaller sample of sightlines for which the thermal pressure (n_H T) and local density can be estimated via analysis of the C I fine-structure excitation, the average electron density inferred from C, Na, and K (assuming photoionization equilibrium) seems to be independent of n_H and n_H T. While the n_e obtained from the ratio N(Ca I)/N(Ca II) is often significantly higher than the values derived from other elements, the patterns of relative n_e derived from different elements show both similarities and differences for different lines of sight -- suggesting that additional processes besides photoionization and radiative recombination commonly and significantly affect the ionization balance of heavy elements in diffuse IS clouds. Such additional processes may also contribute to the (apparently) larger than expected fractional ionizations (n_e/n_H) found for some lines of sight with independent determinations of n_H. In general, inclusion of ``grain-assisted'' recombination does reduce the inferred n_e, but it does not reconcile the n_e estimated from different elements. The depletion of calcium may have a much weaker dependence on density than was suggested by earlier comparisons with CH and CN.Comment: aastex, 70 pages, accepted to ApJ

Molecular Hydrogen in the FUSE Translucent Lines of Sight: The Full Sample

We report total abundances and related parameters for the full sample of the FUSE survey of molecular hydrogen in 38 translucent lines of sight. New results are presented for the "second half" of the survey involving 15 lines of sight to supplement data for the first 23 lines of sight already published. We assess the correlations between molecular hydrogen and various extinction parameters in the full sample, which covers a broader range of conditions than the initial sample. In particular, we are now able to confirm that many, but not all, lines of sight with shallow far-UV extinction curves and large values of the total-to-selective extinction ratio, $R_V$ = $A_V$ / $E(B-V)$ -- characteristic of larger than average dust grains -- are associated with particularly low hydrogen molecular fractions ($f_{\rm H2}$). In the lines of sight with large $R_V$, there is in fact a wide range in molecular fractions, despite the expectation that the larger grains should lead to less H$_2$ formation. However, we see specific evidence that the molecular fractions in this sub-sample are inversely related to the estimated strength of the UV radiation field and thus the latter factor is more important in this regime. We have provided an update to previous values of the gas-to-dust ratio, $N$(H$_{\rm tot}$)/$E(B-V)$, based on direct measurements of $N$(H$_2$) and $N$(H I). Although our value is nearly identical to that found with Copernicus data, it extends the relationship by a factor of 2 in reddening. Finally, as the new lines of sight generally show low to moderate molecular fractions, we still find little evidence for single monolithic "translucent clouds" with $f_{\rm H2}$ $\sim$ 1.Comment: 35 pages, 5 tables, 7 figures, accepted for publication in The Astrophysical Journal Supplements Serie

Towards a fullerene-based quantum computer

Molecular structures appear to be natural candidates for a quantum technology: individual atoms can support quantum superpositions for long periods, and such atoms can in principle be embedded in a permanent molecular scaffolding to form an array. This would be true nanotechnology, with dimensions of order of a nanometre. However, the challenges of realising such a vision are immense. One must identify a suitable elementary unit and demonstrate its merits for qubit storage and manipulation, including input / output. These units must then be formed into large arrays corresponding to an functional quantum architecture, including a mechanism for gate operations. Here we report our efforts, both experimental and theoretical, to create such a technology based on endohedral fullerenes or 'buckyballs'. We describe our successes with respect to these criteria, along with the obstacles we are currently facing and the questions that remain to be addressed.Comment: 20 pages, 13 figs, single column forma

Four Weeks of Probiotic Supplementation Alters the Metabolic Perturbations Induced by Marathon Running: Insight from Metabolomics

Few data are available that describe how probiotics influence systemic metabolism during endurance exercise. Metabolomic profiling of endurance athletes will elucidate mechanisms by which probiotics may confer benefits to the athlete. In this study, twenty-four runners (20 male, 4 female) were block randomised into two groups using a double-blind matched-pairs design according to their most recent Marathon performance. Runners were assigned to 28-days of supplementation with a multi-strain probiotic (PRO) or a placebo (PLB). Following 28-days of supplementation, runners performed a competitive track Marathon race. Venous blood samples and muscle biopsies (vastus lateralis) were collected on the morning of the race and immediately post-race. Samples were subsequently analysed by untargeted 1H-NMR metabolomics. Principal component analysis (PCA) identified a greater difference in the post-Marathon serum metabolome in the PLB group vs. PRO. Univariate tests identified 17 non-overlapped metabolites in PLB, whereas only seven were identified in PRO. By building a PLS-DA model of two components, we revealed combinations of metabolites able to discriminate between PLB and PRO post-Marathon. PCA of muscle biopsies demonstrated no discernible difference post-Marathon between treatment groups. In conclusion, 28-days of probiotic supplementation alters the metabolic perturbations induced by a Marathon. Such findings may be related to maintaining the integrity of the gut during endurance exercise