Fragmentation Increases Impact of Wind Disturbance on Forest Structure and Carbon Stocks in a Western Amazonian Landscape

Tropical second-growth forests could help mitigate climate change, but the degree to which their carbon potential is achieved will depend on exposure to disturbance. Wind disturbance is common in tropical forests, shaping structure, composition, and function, and influencing successional trajectories. However, little is known about the impacts of extreme winds in fragmented landscapes, though second-growth forests are often located in mosaics of forest, pasture, cropland, and other land cover types. Though indirect evidence suggests that fragmentation increases risk of wind damage, few studies have found such impacts following severe storms. In this study, we ask whether fragmentation and forest type (old vs. second growth) were associated with variation in wind damage after a severe convective storm in a fragmented production landscape in western Amazonia. We applied linear spectral unmixing to Landsat 8 imagery from before and after the storm, and combined it with field observations of damage to map wind effects on forest structure and biomass (Figure 4, 5). We also used Landsat 8 imagery to map land cover with the goals of identifying old- and second-growth forest and characterizing fragmentation. We used these data to assess variation in wind disturbance across 95,596 hectares of forest, distributed over 6,110 patches. We find that fragmentation is significantly associated with wind damage, with damage severity higher at forest edges and in edgier, more isolated patches (Figure 7). Damage was more severe in old-growth than in second-growth forests, but this effect was weaker than that of fragmentation (Figure 8). These results illustrate the importance of considering spatial configuration and landscape context in planning tropical forest restoration and predicting carbon sequestration in second-growth forests. Future research should address the mechanisms behind these results, to minimize wind damage risk in second-growth forests so their carbon potential can be maximally achieved

Email spam detection : a symbiotic feature selection approach fostered by evolutionary computation

Post-print version (prior to journal publication)The electronic mail (email) is nowadays an essential communication service being widely used by most Internet users. One of the main problems affecting this service is the proliferation of unsolicited messages (usually denoted by spam) which, despite the efforts made by the research community, still remains as an inherent problem affecting this Internet service. In this perspective, this work proposes and explores the concept of a novel symbiotic feature selection approach allowing the exchange of relevant features among distinct collaborating users, in order to improve the behavior of anti-spam filters. For such purpose, several Evolutionary Algorithms (EA) are explored as optimization engines able to enhance feature selection strategies within the anti-spam area. The proposed mechanisms are tested using a realistic incremental retraining evaluation procedure and resorting to a novel corpus based on the well-known Enron datasets mixed with recent spam data. The obtained results show that the proposed symbiotic approach is competitive also having the advantage of preserving end-users privacy.The work of P. Cortez and P. Sousa was funded by FEDER, through the program COMPETE and the Portuguese Foundation for Science and Technology (FCT), within the project FCOMP-01-0124-FEDER-022674

Using synchronization to improve earthquake forecasting in a cellular automaton model

A new forecasting strategy for stochastic systems is introduced. It is inspired by the concept of anticipated synchronization between pairs of chaotic oscillators, recently developed in the area of Dynamical Systems, and by the earthquake forecasting algorithms in which different pattern recognition functions are used for identifying seismic premonitory phenomena. In the new strategy, copies (clones) of the original system (the master) are defined, and they are driven using rules that tend to synchronize them with the master dynamics. The observation of definite patterns in the state of the clones is the signal for connecting an alarm in the original system that efficiently marks the impending occurrence of a catastrophic event. The power of this method is quantitatively illustrated by forecasting the occurrence of characteristic earthquakes in the so-called Minimalist Model.Comment: 4 pages, 3 figure

Domestication and divergence of Saccharomyces cerevisiae beer yeasts

Whereas domestication of livestock, pets, and crops is well documented, it is still unclear to what extent microbes associated with the production of food have also undergone human selection and where the plethora of industrial strains originates from. Here, we present the genomes and phenomes of 157 industrial Saccharomyces cerevisiae yeasts. Our analyses reveal that today's industrial yeasts can be divided into five sublineages that are genetically and phenotypically separated from wild strains and originate from only a few ancestors through complex patterns of domestication and local divergence. Large-scale phenotyping and genome analysis further show strong industry-specific selection for stress tolerance, sugar utilization, and flavor production, while the sexual cycle and other phenotypes related to survival in nature show decay, particularly in beer yeasts. Together, these results shed light on the origins, evolutionary history, and phenotypic diversity of industrial yeasts and provide a resource for further selection of superior strains

Una innovación educativa en la formación docente en ciencias sociales

Esta ponencia se enmarca en un Proyecto de Investigación, denominado: “La práctica docente con TIC en el área de Ciencias Sociales y Biología”.Nos preguntamos: ¿qué representaciones de la práctica docente con TIC poseen estudiantes avanzados de los profesorados de la UNRC en esta sociedad de la información?.El objetivo general es: “Comprender las representaciones de estudiantes avanzados de los profesorados de Ciencias Sociales acerca de TIC y las modalidades de uso en su práctica docente”. En tanto las representaciones son complejas y en permanente movimiento, a veces contradictorias y los actores sociales atribuyen significados diversos a sus acciones e interacciones dentro de un contexto histórico y social determinado, en esta investigación se utiliza una lógica cualitativa que enfatiza el descubrimiento, la inducción analítica, y la comprensión.El proceso metodológico es el inductivo-analítico a través del cual se realiza la confrontación teoría-empírea y su operativización incluye: el muestreo intencional, el Grupo focal (Mónica Petrasi en Kornblit, 2007), la encuesta, el método comparativo constante.(Glasser y Straus, 1967) y la triangulación, es decir, “mirar los hechos desde distintos ángulos Elliot, (1990).Por ser un proyecto recientemente iniciado los avances a exponer son los relativos a representaciones de TIC en alumnos avanzados y la integración curricular propuesta en programaciones didácticas.La integración curricular de las TIC en la enseñanza es una problemática social que demanda una reflexión profunda sobre el sentido de realidad del mundo, del hombre y de la sociedad, de allí su importancia en la formación docent

Controlling chaotic transients: Yorke's game of survival

5 pages, 4 figures.-- PACS nr.: 05.45.Gg, 05.45.Pq.-- PMID: 14995689 [PubMed].We consider the tent map as the prototype of a chaotic system with escapes. We show analytically that a small, bounded, but carefully chosen perturbation added to the system can trap forever an orbit close to the chaotic saddle, even in presence of noise of larger, although bounded, amplitude. This problem is focused as a two-person, mathematical game between two players called "the protagonist" and "the adversary." The protagonist's goal is to survive. He can lose but cannot win; the best he can do is survive to play another round, struggling ad infinitum. In the absence of actions by either player, the dynamics diverge, leaving a relatively safe region, and we say the protagonist loses. What makes survival difficult is that the adversary is allowed stronger "actions" than the protagonist. What makes survival possible is (i) the background dynamics (the tent map here) are chaotic and (ii) the protagonist knows the action of the adversary in choosing his response and is permitted to choose the initial point x(0) of the game. We use the "slope 3" tent map in an example of this problem. We show that it is possible for the protagonist to survive.J.A. and M.S.J. acknowledge financial support from the Spanish Ministry of Science and Technology under project BFM2000-0967, and from the Universidad Rey Juan Carlos under projects URJC-PGRAL-2001/02 and URJC-PIGE-02-04. F.d'O. acknowledges financial support from MCyT (Spain) and FEDER, project REN2001-0802-C02-01/MAR (IMAGEN).Peer reviewe

Distinct Roles of Mus81, Yen1, Slx1-Slx4, and Rad1 Nucleases in the Repair of Replication-Born Double-Strand Breaks by Sister Chromatid Exchange

Most spontaneous DNA double-strand breaks (DSBs) arise during replication and are repaired by homologous recombination (HR) with the sister chromatid. Many proteins participate in HR, but it is often difficult to determine their in vivo functions due to the existence of alternative pathways. Here we take advantage of an in vivo assay to assess repair of a specific replication-born DSB by sister chromatid recombination (SCR). We analyzed the functional relevance of four structure-selective endonucleases (SSEs), Yen1, Mus81-Mms4, Slx1-Slx4, and Rad1, on SCR in Saccharomyces cerevisiae. Physical and genetic analyses showed that ablation of any of these SSEs leads to a specific SCR decrease that is not observed in general HR. Our work suggests that Yen1, Mus81-Mms4, Slx4, and Rad1, but not Slx1, function independently in the cleavage of intercrossed DNA structures to reconsti-tute broken replication forks via HR with the sister chromatid. These unique effects, which have not been detected in other stud-ies unless double mutant combinations were used, indicate the formation of distinct alternatives for the repair of replication- born DSBs that require specific SSEs.Ministerio de Ciencia e Innovación FU2010-16372, CSD2007-015Junta de Andalucía BIO102 and CVI4567National Institutes of Health GM5801

Effects of Tetrodotoxin in Mouse Models of Visceral Pain

Visceral pain is very common and represents a major unmet clinical need for which current pharmacological treatments are often insufficient. Tetrodotoxin (TTX) is a potent neurotoxin that exerts analgesic actions in both humans and rodents under different somatic pain conditions, but its effect has been unexplored in visceral pain. Therefore, we tested the effects of systemic TTX in viscero-specific mouse models of chemical stimulation of the colon (intracolonic instillation of capsaicin and mustard oil) and intraperitoneal cyclophosphamide-induced cystitis. The subcutaneous administration of TTX dose-dependently inhibited the number of pain-related behaviors in all evaluated pain models and reversed the referred mechanical hyperalgesia (examined by stimulation of the abdomen with von Frey filaments) induced by capsaicin and cyclophosphamide, but not that induced by mustard oil. Morphine inhibited both pain responses and the referred mechanical hyperalgesia in all tests. Conditional nociceptor‑specific Nav1.7 knockout mice treated with TTX showed the same responses as littermate controls after the administration of the algogens. No motor incoordination after the administration of TTX was observed. These results suggest that blockade of TTX-sensitive sodium channels, but not Nav1.7 subtype alone, by systemic administration of TTX might be a potential therapeutic strategy for the treatment of visceral pain.R. González-Cano was supported by a postdoctoral grant from the Contratos-Puente Research Program of the University of Granada. M.A. Tejada was supported by a predoctoral grant from the University of Granada. F. R. Nieto was supported by a postdoctoral Juan de la Cierva grant (Spanish Goverment). This study was partially supported by grant GREIB (CEB-005) from the University of Granada and grant CTS 109 from the Junta de Andalucía

A new ex vivo method to evaluate the performance of candidate MRI contrast agents: a proof-of-concept study

BACKGROUND: Magnetic resonance imaging (MRI) plays an important role in tumor detection/diagnosis. The use of exogenous contrast agents (CAs) helps to improve the discrimination between lesion and neighbouring tissue, but most of the currently available CAs are non-specific. Assessing the performance of new, selective CAs requires exhaustive assays and large amounts of material. Accordingly, in a preliminary screening of new CAs, it is important to choose candidate compounds with good potential for in vivo efficiency. This screening method should reproduce as close as possible the in vivo environment. In this sense, a fast and reliable method to select the best candidate CAs for in vivo studies would minimize time and investment cost, and would benefit the development of better CAs. RESULTS: The post-mortem ex vivo relative contrast enhancement (RCE) was evaluated as a method to screen different types of CAs, including paramagnetic and superparamagnetic agents. In detail, sugar/gadolinium-loaded gold nanoparticles (Gd-GNPs) and iron nanoparticles (SPIONs) were tested. Our results indicate that the post-mortem ex vivo RCE of evaluated CAs, did not correlate well with their respective in vitro relaxivities. The results obtained with different Gd-GNPs suggest that the linker length of the sugar conjugate could modulate the interactions with cellular receptors and therefore the relaxivity value. A paramagnetic CA (GNP (E_2)), which performed best among a series of Gd-GNPs, was evaluated both ex vivo and in vivo. The ex vivo RCE was slightly worst than gadoterate meglumine (201.9 ± 9.3% versus 237 ± 14%, respectively), while the in vivo RCE, measured at the time-to-maximum enhancement for both compounds, pointed to GNP E_2 being a better CA in vivo than gadoterate meglumine. This is suggested to be related to the nanoparticule characteristics of the evaluated GNP. CONCLUSION: We have developed a simple, cost-effective relatively high-throughput method for selecting CAs for in vivo experiments. This method requires approximately 800 times less quantity of material than the amount used for in vivo administrations

The RNA-binding protein ELAV regulates Hox RNA processing, expression and function within the Drosophila nervous system

The regulated head-to-tail expression of Hox genes provides a coordinate system for the activation of specific programmes of cell differentiation according to axial level. Recent work indicates that Hox expression can be regulated via RNA processing but the underlying mechanisms and biological significance of this form of regulation remain poorly understood. Here we explore these issues within the developing Drosophila central nervous system (CNS). We show that the pan-neural RNA-binding protein (RBP) ELAV (Hu antigen) regulates the RNA processing patterns of the Hox gene Ultrabithorax (Ubx) within the embryonic CNS. Using a combination of biochemical, genetic and imaging approaches we demonstrate that ELAV binds to discrete elements within Ubx RNAs and that its genetic removal reduces Ubx protein expression in the CNS leading to the respecification of cellular subroutines under Ubx control, thus defining for the first time a specific cellular role of ELAV within the developing CNS. Artificial provision of ELAV in glial cells (a cell type that lacks ELAV) promotes Ubx expression, suggesting that ELAVdependent regulation might contribute to cell type-specific Hox expression patterns within the CNS. Finally, we note that expression of abdominal A and Abdominal B is reduced in elav mutant embryos, whereas other Hox genes (Antennapedia) are not affected. Based on these results and the evolutionary conservation of ELAV and Hox genes we propose that the modulation of Hox RNA processing by ELAV serves to adapt the morphogenesis of the CNS to axial level by regulating Hox expression and consequently activating local programmes of neural differentiation