Chaotic mixing in noisy Hamiltonian systems

This paper summarises an investigation of the effects of low amplitude noise and periodic driving on phase space transport in 3-D Hamiltonian systems, a problem directly applicable to systems like galaxies, where such perturbations reflect internal irregularities and.or a surrounding environment. A new diagnsotic tool is exploited to quantify how, over long times, different segments of the same chaotic orbit can exhibit very different amounts of chaos. First passage time experiments are used to study how small perturbations of an individual orbit can dramatically accelerate phase space transport, allowing `sticky' chaotic orbits trapped near regular islands to become unstuck on suprisingly short time scales. Small perturbations are also studied in the context of orbit ensembles with the aim of understanding how such irregularities can increase the efficacy of chaotic mixing. For both noise and periodic driving, the effect of the perturbation scales roughly in amplitude. For white noise, the details are unimportant: additive and multiplicative noise tend to have similar effects and the presence or absence of a friction related to the noise by a Fluctuation- Dissipation Theorem is largely irrelevant. Allowing for coloured noise can significantly decrease the efficacy of the perturbation, but only when the autocorrelation time, which vanishes for white noise, becomes so large that t here is little power at frequencies comparable to the natural frequencies of the unperturbed orbit. This suggests strongly that noise-induced extrinsic diffusion, like modulational diffusion associated with periodic driving, is a resonance phenomenon. Potential implications for galaxies are discussed.Comment: 15 pages including 18 figures, uses MNRAS LaTeX macro

Free Radicals in Superfluid Liquid Helium Nanodroplets: A Pyrolysis Source for the Production of Propargyl Radical

An effusive pyrolysis source is described for generating a continuous beam of radicals under conditions appropriate for the helium droplet pick-up method. Rotationally resolved spectra are reported for the $\nu_1$ vibrational mode of the propargyl radical in helium droplets at 3322.15 cm$^{-1}$. Stark spectra are also recorded that allow for the first experimental determination of the permanent electric dipole moment of propargyl, namely -0.150 D and -0.148 D for ground and excited state, respectively, in good agreement with previously reported ab initio results of -0.14 D [1]. The infrared spectrum of the $\nu_1$ mode of propargyl-bromide is also reported. The future application of these methods for the production of novel radical clusters is discussed

On gravitational-wave spectroscopy of massive black holes with the space interferometer LISA

Newly formed black holes are expected to emit characteristic radiation in the form of quasi-normal modes, called ringdown waves, with discrete frequencies. LISA should be able to detect the ringdown waves emitted by oscillating supermassive black holes throughout the observable Universe. We develop a multi-mode formalism, applicable to any interferometric detectors, for detecting ringdown signals, for estimating black hole parameters from those signals, and for testing the no-hair theorem of general relativity. Focusing on LISA, we use current models of its sensitivity to compute the expected signal-to-noise ratio for ringdown events, the relative parameter estimation accuracy, and the resolvability of different modes. We also discuss the extent to which uncertainties on physical parameters, such as the black hole spin and the energy emitted in each mode, will affect our ability to do black hole spectroscopy.Comment: 44 pages, 21 figures, 10 tables. Minor changes to match version in press in Phys. Rev.

Dynamic Sealing Using Magneto-Rheological Fluids

Micropumps are microfluidic components which are widely used in applications such as chemical analysis, biological sensing and micro-robots. However, one obstacle in developing micropumps is the extremely low efficiency relative to their macro-scale counterparts. This paper presents a dynamic sealing method for external gear pumps to reduce the volumetric losses through the clearance between the tips of gears and the housing by using magneto-rheological (MR) fluids. By mitigating these losses, we are able to achieve high efficiency and high volumetric accuracy with current mechanical architectures and manufacturing tolerances. Static and dynamic sealing using MR fluids are investigated theoretically and experimentally. Two Mason numbers $Mn\left(p\right)$ and $Mn\left(\Omega\right)$ which are defined in terms of pressure gradient of the flow and velocity of the moving boundary respectively are used to characterize and evaluate the sealing performance. A range of magnetic field intensities is explored to determine optimal sealing effectiveness, where effectiveness is evaluated using the ratio of volumetric loss and friction factor. Finally, we quantify the effectiveness of this dynamic sealing method under different working conditions for gear pumps.Comment: 9 pages; 10 figures

Chaos and the continuum limit in the gravitational N-body problem II. Nonintegrable potentials

This paper continues a numerical investigation of orbits evolved in `frozen,' time-independent N-body realisations of smooth time-independent density distributions corresponding to both integrable and nonintegrable potentials, allowing for N as large as 300,000. The principal focus is on distinguishing between, and quantifying, the effects of graininess on initial conditions corresponding, in the continuum limit, to regular and chaotic orbits. Ordinary Lyapunov exponents X do not provide a useful diagnostic for distinguishing between regular and chaotic behaviour. Frozen-N orbits corresponding in the continuum limit to both regular and chaotic characteristics have large positive X even though, for large N, the `regular' frozen-N orbits closely resemble regular characteristics in the smooth potential. Viewed macroscopically both `regular' and `chaotic' frozen-N orbits diverge as a power law in time from smooth orbits with the same initial condition. There is, however, an important difference between `regular' and `chaotic' frozen-N orbits: For regular orbits, the time scale associated with this divergence t_G ~ N^{1/2}t_D, with t_D a characteristic dynamical time; for chaotic orbits t_G ~ (ln N) t_D. At least for N>1000 or so, clear distinctions exist between phase mixing of initially localised orbit ensembles which, in the continuum limit, exhibit regular versus chaotic behaviour. For both regular and chaotic ensembles, finite-N effects are well mimicked, both qualitatively and quantitatively, by energy-conserving white noise with amplitude ~ 1/N. This suggests strongly that earlier investigations of the effects of low amplitude noise on phase space transport in smooth potentials are directly relevant to real physical systems.Comment: 20 pages, including 21 FIGURES, uses RevTeX macro

Noise-Induced Phase Space Transport in Two-Dimensional Hamiltonian Systems

First passage time experiments were used to explore the effects of low amplitude noise as a source of accelerated phase space diffusion in two-dimensional Hamiltonian systems, and these effects were then compared with the effects of periodic driving. The objective was to quantify and understand the manner in which ``sticky'' chaotic orbits that, in the absence of perturbations, are confined near regular islands for very long times, can become ``unstuck'' much more quickly when subjected to even very weak perturbations. For both noise and periodic driving, the typical escape time scales logarithmically with the amplitude of the perturbation. For white noise, the details seem unimportant: Additive and multiplicative noise typically have very similar effects, and the presence or absence of a friction related to the noise by a Fluctuation-Dissipation Theorem is also largely irrelevant. Allowing for colored noise can significantly decrease the efficacy of the perturbation, but only when the autocorrelation time becomes so large that there is little power at frequencies comparable to the natural frequencies of the unperturbed orbit. Similarly, periodic driving is relatively inefficient when the driving frequency is not comparable to these natural frequencies. This suggests strongly that noise-induced extrinsic diffusion, like modulational diffusion associated with periodic driving, is a resonance phenomenon. The logarithmic dependence of the escape time on amplitude reflects the fact that the time required for perturbed and unperturbed orbits to diverge a given distance scales logarithmically in the amplitude of the perturbation.Comment: 15 pages, including 13 Figures and 1 Table, uses Phys. Rev. macro

Dark Matter Dynamics and Indirect Detection

Non-baryonic, or "dark," matter is believed to be a major component of the total mass budget of the universe. We review the candidates for particle dark matter and discuss the prospects for direct detection (via interaction of dark matter particles with laboratory detectors) and indirect detection (via observations of the products of dark matter self-annihilations), focusing in particular on the Galactic center, which is among the most promising targets for indirect detection studies. The gravitational potential at the Galactic center is dominated by stars and by the supermassive black hole, and the dark matter distribution is expected to evolve on sub-parsec scales due to interaction with these components. We discuss the dominant interaction mechanisms and show how they can be used to rule out certain extreme models for the dark matter distribution, thus increasing the information that can be gleaned from indirect detection searches.Comment: 17 pages. Invited review for Modern Physics Letters

A Note on Gravitational Brownian Motion

Chandrasekhar's theory of stellar encounters predicts a dependence of the Brownian motion of a massive particle on the velocity distribution of the perturbing stars. One consequence is that the expectation value of the massive object's kinetic energy can be different from that of the perturbers. This effect is shown to be modest however, and substantially smaller than claimed in a recent study based on a more approximate treatment of the encounter equations.Comment: 7 pages, 3 figure

Characteristic Temperatures of Folding of a Small Peptide

We perform a generalized-ensemble simulation of a small peptide taking the interactions among all atoms into account. From this simulation we obtain thermodynamic quantities over a wide range of temperatures. In particular, we show that the folding of a small peptide is a multi-stage process associated with two characteristic temperatures, the collapse temperature T_{\theta} and the folding temperature T_f. Our results give supporting evidence for the energy landscape picture and funnel concept. These ideas were previously developed in the context of studies of simplified protein models, and here for the first time checked in an all-atom Monte Carlo simulation.Comment: Latex, 6 Figure

First Detection of Mycobacterium ulcerans DNA in Environmental Samples from South America

The occurrences of many environmentally-persistent and zoonotic infections are driven by ecosystem changes, which in turn are underpinned by land-use modifications that alter the governance of pathogen, biodiversity and human interactions. Our current understanding of these ecological changes on disease emergence however remains limited. Buruli ulcer is an emerging human skin disease caused by the mycobacterium, Mycobacterium ulcerans, for which the exact route of infection remains unclear. It can have a devastating impact on its human host, causing extensive necrosis of the skin and underlying tissue, often leading to permanent disability. The mycobacterium is associated with tropical aquatic environments and incidences of the disease are significantly higher on floodplains and where there is an increase of human aquatic activities. Although the disease has been previously diagnosed in South America, until now the presence of M. ulcerans DNA in the wild has only been identified in Australia where there have been significant outbreaks and in western and central regions of Africa where the disease is persistent. Here for the first time, we have identified the presence of the aetiological agent's DNA in environmental samples from South America. The DNA was positively identified using Real-time Polymerase Chain Reaction (PCR) on 163 environmental samples, taken from 23 freshwater bodies in French Guiana (Southern America), using primers for both IS2404 and for the ketoreductase-B domain of the M. ulcerans mycolactone polyketide synthase genes (KR). Five samples out of 163 were positive for both primers from three different water bodies. A further nine sites had low levels of IS2404 close to a standard CT of 35 and could potentially harbour M. ulcerans. The majority of our positive samples (8/14) came from filtered water. These results also reveal the Sinnamary River as a potential source of infection to humans. © 2014 Morris et al