Editorial

International audienc

The diet of Rana temporaria Linnaeus, 1758 in relation to prey availability near its altitudinal limit

The diet of Rana temporaria (Linnaeus, 1758) was studied in the Gran Paradiso National Park, at and above the local timberline, up to the upper limit of its altitudinal distribution. A total of 128 adult frogs (length range: 3.7-9.0 cm) were captured from 2010 to 2012. Stomach content from 46 individuals was obtained by stomach flushing, of which 66% of the stomachs were empty. The diet composition was compared with the composition of the ground-dwelling invertebrate community, sampled by pitfall trapping. The number of prey items in the stomachs was lower at higher altitude and during the breeding season, when most of the stomachs were empty. R. temporaria feeds on a large number of taxa (in order of abundance: Coleoptera, Diptera, Hymenoptera, Opiliones, Araneae, Lepidoptera, Plecoptera, Trichoptera, Orthoptera, Acarina and Chilopoda), including a single observation of cannibalism on a freshly metamorphosed frog. There is a strong similarity between prey composition and availability. Therefore, near its altitudinal limit, Rana temporaria shows a generalist and slightly selective predatory behavior

ENCORE:Software for Quantitative Ensemble Comparison

There is increasing evidence that protein dynamics and conformational changes can play an important role in modulating biological function. As a result, experimental and computational methods are being developed, often synergistically, to study the dynamical heterogeneity of a protein or other macromolecules in solution. Thus, methods such as molecular dynamics simulations or ensemble refinement approaches have provided conformational ensembles that can be used to understand protein function and biophysics. These developments have in turn created a need for algorithms and software that can be used to compare structural ensembles in the same way as the root-mean-square-deviation is often used to compare static structures. Although a few such approaches have been proposed, these can be difficult to implement efficiently, hindering a broader applications and further developments. Here, we present an easily accessible software toolkit, called ENCORE, which can be used to compare conformational ensembles generated either from simulations alone or synergistically with experiments. ENCORE implements three previously described methods for ensemble comparison, that each can be used to quantify the similarity between conformational ensembles by estimating the overlap between the probability distributions that underlie them. We demonstrate the kinds of insights that can be obtained by providing examples of three typical use-cases: comparing ensembles generated with different molecular force fields, assessing convergence in molecular simulations, and calculating differences and similarities in structural ensembles refined with various sources of experimental data. We also demonstrate efficient computational scaling for typical analyses, and robustness against both the size and sampling of the ensembles. ENCORE is freely available and extendable, integrates with the established MDAnalysis software package, reads ensemble data in many common formats, and can work with large trajectory files

Desain Dan Kasus Pembajakan Karya Intelektual Di Indonesia

Design piracy, though considered as serious problems, is often overlooked. This phenomenoncommonly found in Third World countries. The government have been have been employing many ways to reduce piracy, such as adopting Intellectual Property Rights. But the effort to combat piracy was challenged by some parties which benefited from such activities. Piracy, in micro perspective, eliminates fair competition and creates unfair competition. The culture of piracy also harassed and submerged the role of law. Law enforcement toward Intellectual Property Rights is a must. The challenge is how to awaken members of society toward the importance of Intellectual Property Rights

Involvement of recreational anglers in the eradication of alien brook trout from high altitude lakes

Stocking programmes for recreational angling are primarily responsible for the spread and ecological impact of introduced sh in high-altitude, originally shless lakes. In 2013, the Gran Paradiso National Park started an eradication campaign of brook trout by intensive gill-netting. Local anglers were invited to attend two angling sessions to start the eradication before gill-netting in an experimental lake, as part of an education action devoted to these critical stakeholders. The angling sessions turned out to be a valuable help for the eradication campaign and the aim of this study is to report on the outcomes of these angling sessions. Angling techniques were highly size-selective, removing a substantial part of the adult population and of the sh biomass, but their contribution to the eradication of small sh (<15cm) was irrelevant. Therefore, angling cannot completely eradicate age-structured populations. However, there is scope to use angling sessions as a support for eradication campaigns and as an emergency measure for recent sh introduc- tions. Similar actions should be considered whenever a sh eradication programme is planned. These ndings, however, do not imply a general endorsement for angling within protected areas

Behind the impact of introduced trout in high altitude lakes: adult, not juvenile fish are responsible of the selective predation on crustacean zooplankton

Introduced fish seriously affect zooplankton communities in mountain lakes, often leading to the loss of large species. Selective predation is recognized to be the ultimate cause of such a strong impact. Here we describe the selection of zooplankton prey by analyzing the stomach contents of more than 300 brook trout (Salvelinus fontinalis) inhabiting seven alpine lakes in the Gran Paradiso National Park (western Italian Alps). Our results show that planktivory is much more common in young fish, which feed on a larger number of taxa, but also adult fish maintain the ability to feed on zooplankton. There is a direct dependence between the length of zooplankton prey and the length of their fish predators, and adult, not juvenile fish are responsible of the selective predation on large crustacean zooplankton, which drive the impact of introduced fish throughout the entire zooplankton community. In some rare cases, large zooplankton populations develop in the presence of brook trout, and planktivory can become an important temporary resource for adult fish during the ice-free season. Thus, in the early stages of the establishment of non-native trout in alpine lakes, large-bodied zooplankton may represent an important food resource

Computational Structural Biology of S-nitrosylation of Cancer Targets

Nitric oxide (NO) plays an essential role in redox signaling in normal and pathological cellular conditions. In particular, it is well known to react in vivo with cysteines by the so-called S-nitrosylation reaction. S-nitrosylation is a selective and reversible post-translational modification that exerts a myriad of different effects, such as the modulation of protein conformation, activity, stability, and biological interaction networks. We have appreciated, over the last years, the role of S-nitrosylation in normal and disease conditions. In this context, structural and computational studies can help to dissect the complex and multifaceted role of this redox post-translational modification. In this review article, we summarized the current state-of-the-art on the mechanism of S-nitrosylation, along with the structural and computational studies that have helped to unveil its effects and biological roles. We also discussed the need to move new steps forward especially in the direction of employing computational structural biology to address the molecular and atomistic details of S-nitrosylation. Indeed, this redox modification has been so far an underappreciated redox post-translational modification by the computational biochemistry community. In our review, we primarily focus on S-nitrosylated proteins that are attractive cancer targets due to the emerging relevance of this redox modification in a cancer setting

Subjects who developed SARS-CoV-2 specific IgM after vaccination show a longer humoral immunity and a lower frequency of infection

Background: We have previously shown that eliciting SARS-CoV-2-specific IgM after vaccination is associated with higher levels of SARS-CoV-2 neutralizing IgG. This study aims to assess whether IgM development is also associated with longer-lasting immunity. Methods: We analysed anti-SARS-CoV-2 spike protein IgG and IgM (IgG-S, IgM-S), and anti-nucleocapsid IgG (IgG-N) in 1872 vaccinees at different time points: before the first dose (D1; w0), before the second dose (D2; w3) at three (w6) and 23 weeks (w29) after D2; moreover, 109 subjects were further tested at the booster dose (D3, w44), at 3 weeks (w47) and 6 months (w70) after D3. Two-level linear regression models were used to evaluate the differences in IgG-S levels. Findings: In subjects who had no evidence of a previous infection at D1 (non-infected, NI), IgM-S development after D1 and D2 was associated with higher IgG-S levels at short (w6, p&nbsp;&lt;&nbsp;0.0001) and long (w29, p&nbsp;&lt;&nbsp;0.001) follow-up. Similar IgG-S levels were observed after D3. The majority (28/33, 85%) of the NI subjects who had developed IgM-S in response to vaccination did not experience infection. Interpretation: The development of anti-SARS-CoV-2 IgM-S following D1 and D2 is associated with higher IgG-S levels. Most individuals who developed IgM-S never became infected, suggesting that IgM elicitation may be associated with a lower risk of infection. Funding: "Fondi Ricerca Corrente" and "Progetto Ricerca Finalizzata" COVID-2020 (Italian Ministry of Health); FUR 2020 Department of Excellence 2018-2022 (MIUR, Italy); the Brain Research Foundation Verona

Recovery of high mountain Alpine lakes after the eradication of introduced brook trout Salvelinus fontinalis using non-chemical methods

The final publication is available at Springer via http://dx.doi.org/10.1007/s10530-018-1867-0Fish stocking is a serious threat to originally fishless mountain lakes. We used non-chemical eradication methods (i.e. gillnetting and electrofishing) in four high mountain lakes in the Gran Paradiso National Park (Western Italian Alps) to eradicate alien brook trout Salvelinus fontinalis. Data of amphibians, macroinvertebrates, zooplankton, chlorophyll-a, nutrient concentrations, and water transparency were used as indicators of the recovery process. All treated lakes were returned to their original fishless condition in spite of their different sizes and habitat complexity, without permanent negative side-effects for native species. Several ecological indicators showed that many impacts of introduced fish can be reversed over a short time period following eradication. The present study adds to a still growing body of specialized literature on the recovery of habitats after the eradication of alien species and provides further evidence that physical eradication methods are effective and can be part of a more general strategy for the conservation of high mountain lake biota