DNA and pacific commensal models : applications, construction, limitations, and future prospects

Components of the Pacific transported landscape have been used as proxies to trace the prehistoric movement of humans across the Pacific for almost two decades. Analyses of archaeological remains and DNA sequences of plants, animals, and microorganisms moved by or with humans have contributed to understanding prehistoric migration, trade, exchange, and sometimes revealed the geographic origins of particular plants and animals. This paper presents the basic elements of a DNA-based commensal model and discusses the phylogenetic and population genetic approaches these models employ. A clear delineation of the underlying assumptions of these models and the background information required to construct them have yet to appear in the literature. This not only provides a framework with which to construct a commensal model but also highlights gaps in current knowledge. The ways in which commensal models have enriched archaeological reconstructions will be highlighted, as will their current limitations. With these limitations in mind, options will be outlined for augmenting commensal models through the application of established techniques and new technologies in order to provide the best tools for reconstructing ancient human mobility and behavior in the Pacific and beyond

A 3000 year old DOG burial in Timor-Leste

The domestic dog (Canis familiaris) is considered to be the oldest domesticated animal in the world. It arrived in Island Southeast Asia and Australia-New Guinea relatively late in the Holocene, though the timing and means of its dispersal remain unclear

The Small and the Dead: A Review of Ancient DNA Studies Analysing Micromammal Species

The file attached is the Published/publisher’s pdf version of the article

DNA and pacific commensal models : applications, construction, limitations, and future prospects

ABSTRACT Components of the Pacific transported landscape have been used as proxies to trace the prehistoric movement of humans across th

A Land of Plenty? Colonial Diet in Rural New Zealand

Colonial New Zealand was built on the ideal of creating better lives for settlers. Emigrants came looking to escape the shackles of the class-system and poor conditions in Industrial Revolution period Britain. Colonial propaganda claimed that most emigrants achieved their aims, but the lives the colonists actually experienced upon reaching New Zealand remain relatively unexplored from a biosocial perspective. In this paper we present a pilot study of stable isotope results of bone collagen from seven adults interred in the St. John’s Cemetery (SJM), Milton, New Zealand (ca. AD 1860–1900). We interpret the diet at Milton and broadly compare our isotopic results with contemporaneous samples from Britain. We show that, like contemporary Britain, the diet of our studied individuals was focused on C3 crops and terrestrial meat sources. Despite higher ????15N values in contemporary UK populations (which can simplistically be interpreted as indicative of higher meat intake), consideration of different local baselines makes it likely that this New Zealand population had relatively similar levels of meat intake. Interestingly marine resources did not form an important part of the Milton diet, despite the site's proximity to the ocean, hinting at the possible stigmatisation of local resources and the development of a European New Zealand (pākehā) food identity

Prehistoric anthropogenic introduction of partulid tree snails in Papua New Guinean archipelagos

Aim  Members of the tropical tree snail family Partulidae are endemic to Pacific high oceanic islands and typically have single‐island ranges. Two nominal Papua New Guinean species, Partula carteriensis and Partula similaris , deviate from familial norms by having extensive multi‐island ranges that include low islands. We hypothesized that undocumented anthropogenic introductions may underlie this regional biogeographical anomaly and evaluated this hypothesis with novel field distributional and genotypic data. Location  Papua New Guinean archipelagos between 1.4 and 11.4° S and 146.5 and 154.2° E. Methods  Ethanol‐preserved museum lots of P. carteriensis (from New Britain, Bismarck Archipelago) and P. similaris (from Woodlark, Boiaboiawaga and Goodenough islands) were genotyped for a standard mitochondrial marker, cytochrome c oxidase subunit I (COI), and the resulting haplotypes were subjected to phylogeographical analyses. Results  All four genotyped populations showed very little genetic or conchological differentiation, irrespective of nominal taxonomic status, the archipelago sampled or whether the island was low, high, oceanic or continental. Partula carteriensis and P. similaris exhibit atypical distributions on larger high islands, being restricted to coastal villages and absent from native forest. Main conclusions  Our results strongly indicate that P. carteriensis and P. similaris are conspecific, although a formal taxonomic revision is beyond the scope of this present study. They collectively exhibit the most heterogeneous geographical range known among partulids and their explicitly synanthropic association with high island coastal villages strongly implicates human introduction as the regional dispersal mechanism. We currently lack insights into the timeframe (apart from regional prehistory) and cultural context of these translocations. We also lack a convincing source population, and it may be necessary to survey the partulid fauna of the neighbouring Solomon Islands to identify one. Partulids are critically endangered throughout much of their range and the discovery of populations that apparently thrive in human‐altered landscapes is noteworthy. Their study may provide clues of broad relevance to partulid conservation.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/86895/1/j.1365-2699.2011.02489.x.pd

Mitochondrial DNA data indicate an introduction through Mainland Southeast Asia for Australian dingoes and Polynesian domestic dogs

In the late stages of the global dispersal of dogs, dingoes appear in the Australian archaeological record 3500 years BP, and dogs were one of three domesticates brought with the colonization of Polynesia, but the introduction routes to this region remain unknown. This also relates to questions about human history, such as to what extent the Polynesian culture was introduced with the Austronesian expansion from Taiwan or adopted en route, and whether pre-Neolithic Australia was culturally influenced by the surrounding Neolithic world. We investigate these questions by mapping the distribution of the mtDNA founder haplotypes for dingoes (A29) and ancient Polynesian dogs (Arc1 and Arc2) in samples across Southern East Asia (n = 424) and Island Southeast Asia (n = 219). All three haplotypes were found in South China, Mainland Southeast Asia and Indonesia but absent in Taiwan and the Philippines, and the mtDNA diversity among dingoes indicates an introduction to Australia 4600–18 300 years BP. These results suggest that Australian dingoes and Polynesian dogs originate from dogs introduced to Indonesia via Mainland Southeast Asia before the Neolithic, and not from Taiwan together with the Austronesian expansion. This underscores the complex origins of Polynesian culture and the isolation from Neolithic influence of the pre-Neolithic Australian culture

Biological anthropology in the Indo-Pacific Region: New approaches to age-old questions

Biological anthropological research, the study of both modern and past humans, is a burgeoning field in the Indo-Pacific region. It is becoming increasingly apparent that the unique environments of the Indo-Pacific have resulted in an archaeological record that does not necessarily align with those in the northern hemisphere. New, regionally-specific archaeological models are being developed, and biological anthropological research has an important role to play in establishing past human experience within these models. In the Indo-Pacific, research using ancient and modern human tissues is adding insight into global processes of prehistoric settlement and migrations, subsistence change and human biosocial adaptation. This review synthesises current themes in biological anthropology in this region. It highlights the diverse methods and approaches used by biological anthropologists to address globally-relevant archaeological questions. In recent decades a collaborative approach between archaeologists, biological anthropologists and local communities has become the norm in the region. The many positive outcomes of this multi-disciplinary approach are highlighted here through the use of regionally-specific case studies. This review ultimately aims to stimulate further collaborations between archaeologists, biological anthropologists and the communities in the region, and demonstrate how the evidence from Indo-Pacific research may be relevant to global archaeological models

Determinación de la madurez térmica de los carbones de la formación guaduas en el Sinclinal Checua - Lenguazaque

66 páginas : ilustraciones color, figuras, tablas.Se realizó un muestreo de los mantos de carbón en la formación Guaduas, flanco Occidental de la cuenca del sinclinal Checua-Lenguazaque, municipios de Sutatausa, Lenguazaque, Guachetá, Raquira y Samaca; con el fin de calcular el gradiente paleogeotérmico a partir del análisis reflectancia media de la vitrinita. El estudio determinó que los carbones de la zona tienen un rango de reflectancia media de 0.64 a 1.6, clasificándose como carbones desde bituminosos bajos volátiles hasta bituminosos altos volátiles. Para la determinación del gradiente paleogetermico se utilizó la fórmula propuesta por Baker, C & Pawlewicz, M, en la cual el valor de la reflectancia se tiene como variable principal; estableciéndose que para esta cuenta el gradiente geotérmico está en un rango de 520 C/Km hacia el sector de Sutatausa y de 1000C/Km hacia el sector de Samacá; asumiéndose que esta variación en el gradiente se debe al mayor efecto del fallamiento en la zona de Samacá que en Sutatausa.Bibliografía y webgrafía: páginas 64-65PregradoIngeniero Geólog

Ancient and modern mitogenomes from Central Argentina: New insights into population continuity, temporal depth and migration in South America

The inverted triangle shape of South America places Argentina territory as a geographical crossroads between the two principal peopling streams that followed either the Pacific or the Atlantic coasts, which could have then merged in Central Argentina (CA). Although the genetic diversity from this region is therefore crucial to decipher past population movements in South America, its characterization has been overlooked so far. We report 92 modern and 22 ancient mitogenomes spanning a temporal range of 5000 years, which were compared with a large set of previously reported data. Leveraging this dataset representative of the mitochondrial diversity of the subcontinent, we investigate the maternal history of CA populations within a wider geographical context. We describe a large number of novel clades within the mitochondrial DNA tree, thus providing new phylogenetic interpretations for South America. We also identify several local clades of great temporal depth with continuity until the present time, which stem directly from the founder haplotypes, suggesting that they originated in the region and expanded from there. Moreover, the presence of lineages characteristic of other South American regions reveals the existence of gene flow to CA. Finally, we report some lineages with discontinuous distribution across the Americas, which suggest the persistence of relic lineages likely linked to the first population arrivals. The present study represents to date the most exhaustive attempt to elaborate a Native American genetic map from modern and ancient complete mitochondrial genomes in Argentina and provides relevant information about the general process of settlement in South America.This work was supported by Agencia Nacional de Promoción de la Investigación, el Desarrollo Tecnológico y la Innovación (PICT 2007-1549, PICT 2012-711 and PICT 2015-3155), Secretaría de Ciencia y Tecnología (Universidad Nacional de Córdoba), Ministerio de Ciencia y Tecnología de la Provincia de Córdoba (PID 2018-79) and Consejo Nacional de Investigaciones Científicas y Técnicas (2015-11220150100953CO). M.P. is a postdoctoral fellow and A.G., R.N., J.M.B.M, C.M.B., M.F. and D.A.D. are research career members of CONICET, Argentina